Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 7.0e-259 896.7 441 100.0
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 5.1e-201 704.5 419 80.2
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 1.3e-196 689.9 419 79.0
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 4.6e-194 681.4 418 77.5
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 5.1e-193 677.9 419 77.3
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 6.6e-193 677.6 419 77.6
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 3.3e-192 675.2 419 77.1
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 1.3e-191 673.3 419 77.1
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 4.0e-190 668.3 423 76.4
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 1.5e-189 666.4 417 76.3
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 7.6e-189 664.1 419 76.4
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 1.7e-188 662.9 418 75.6
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 1.1e-187 660.2 420 75.0
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 2.7e-186 655.6 416 75.0
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 3.5e-186 655.2 419 76.4
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 5.1e-185 651.4 438 72.6
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 6.7e-185 651.0 417 74.3
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 1.9e-184 649.4 418 75.6
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 3.3e-184 648.7 420 73.1
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 4.3e-184 648.3 415 75.4
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 9.0e-182 640.6 414 74.4
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 2.6e-181 639.0 414 74.2
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 3.4e-181 638.6 414 74.2
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 3.8e-180 635.2 416 73.6
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 1.1e-179 633.6 419 74.7
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 3.5e-178 628.6 414 72.5
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 1.3e-177 626.7 417 72.9
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 1.8e-177 626.3 418 72.2
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 1.8e-177 626.3 419 72.3
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 3.9e-177 625.2 413 73.6
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 2.5e-176 622.5 419 71.8
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 3.3e-176 622.1 414 72.2
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 1.6e-175 619.8 415 71.8
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 4.8e-175 618.2 416 71.9
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 6.9e-174 614.4 419 71.1
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 1.2e-173 613.6 419 70.9
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 1.5e-173 613.2 420 69.0
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 7.6e-173 610.9 416 71.4
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 1.7e-172 609.8 416 69.5
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 3.8e-172 608.6 419 70.4
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 8.4e-172 607.4 419 70.6
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 9.3e-171 604.0 418 68.7
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 2.1e-170 602.8 416 70.2
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 3.5e-170 602.1 420 69.8
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 3.5e-170 602.1 419 68.3
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 4.6e-170 601.7 420 70.0
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 6.0e-170 601.3 418 67.5
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 1.0e-169 600.5 412 68.4
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 5.1e-169 598.2 419 69.5
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 1.5e-168 596.7 418 69.6
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 1.9e-168 596.3 417 69.5
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 2.5e-168 595.9 417 69.3
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 7.4e-168 594.3 418 67.5
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 6.3e-167 591.3 413 69.0
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 1.1e-166 590.5 418 66.3
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 1.4e-166 590.1 409 69.4
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 1.8e-166 589.7 416 68.3
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 2.4e-166 589.3 414 69.8
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 3.1e-166 589.0 409 68.9
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 3.1e-166 589.0 418 66.0
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 6.9e-166 587.8 430 64.7
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 1.5e-165 586.6 419 69.0
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 3.4e-165 585.5 409 69.4
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 1.7e-164 583.2 418 66.5
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 1.1e-163 580.5 419 67.3
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 4.2e-163 578.6 419 67.1
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 4.2e-163 578.6 419 68.7
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 1.6e-162 576.6 410 67.6
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 1.6e-162 576.6 416 66.1
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 4.6e-162 575.1 412 69.4
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 6.1e-162 574.7 410 69.5
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 1.0e-161 573.9 416 65.6
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 1.4e-161 573.5 419 68.3
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 1.8e-161 573.2 410 68.8
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 2.0e-160 569.7 409 67.5
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 2.0e-160 569.7 419 67.8
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 2.0e-160 569.7 419 67.8
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 1.8e-158 563.1 419 66.8
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 4.1e-158 562.0 430 64.9
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 3.4e-157 558.9 408 67.4
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 1.7e-156 556.6 416 65.6
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 2.9e-156 555.8 411 64.7
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 5.0e-156 555.1 420 66.0
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 4.2e-155 552.0 411 64.7
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 5.5e-155 551.6 388 69.1
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 7.2e-155 551.2 411 64.5
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 2.7e-154 549.3 411 64.2
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 3.6e-154 548.9 408 65.7
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 4.7e-154 548.5 421 65.6
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 6.1e-154 548.1 411 64.0
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 3.9e-153 545.4 417 62.6
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 5.1e-153 545.0 411 64.0
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 2.0e-152 543.1 413 65.1
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 3.3e-152 542.3 430 64.0
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 5.7e-152 541.6 408 65.4
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 1.7e-151 540.0 410 64.4
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 3.7e-151 538.9 419 64.0
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 3.1e-150 535.8 391 68.5
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 1.2e-149 533.9 441 64.2
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 2.0e-149 533.1 417 62.8
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 4.5e-149 531.9 422 61.1
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 1.4e-145 520.4 409 63.3
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 3.9e-145 518.8 343 73.5
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 1.8e-142 510.0 416 59.4
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 2.4e-142 509.6 418 59.6
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 2.2e-140 503.1 396 63.1
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 5.0e-140 501.9 408 62.5
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 1.2e-138 497.3 384 63.0
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 2.7e-138 496.1 417 55.2
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 1.0e-137 494.2 414 60.6
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 1.2e-133 480.7 417 61.2
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 2.7e-133 479.6 417 54.0
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 2.5e-131 473.0 384 60.7
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 2.5e-131 473.0 411 55.7
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 5.2e-129 465.3 346 66.5
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 1.3e-127 460.7 325 66.2
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 4.0e-121 439.1 313 67.4
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 5.2e-121 438.7 390 57.7
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 5.7e-120 435.3 396 58.3
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 1.4e-113 414.1 383 56.4
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 1.2e-112 411.0 255 83.5
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 5.8e-104 382.1 453 47.0
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 4.3e-99 365.9 200 92.0
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 7.3e-99 365.2 200 92.0
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 4.0e-97 359.4 419 47.3
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 5.2e-89 332.4 405 43.5
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 9.9e-88 328.2 421 42.0
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 4.8e-74 282.7 191 70.2
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 1.2e-64 251.5 223 56.1
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 5.1e-60 236.1 148 71.6
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 8.7e-60 235.3 273 49.5
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 3.7e-58 229.9 225 54.7
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 4.1e-57 226.5 410 37.8
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 1.0e-55 221.9 222 53.6
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 1.2e-53 214.9 149 69.1
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 3.9e-52 209.9 173 63.0
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 6.9e-49 199.1 254 46.1
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 5.3e-41 172.9 110 69.1
BcaC06g35090 Brassica carinata HOM05D004011 ORTHO05D005290 7.2e-38 162.5 178 51.1
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 1.1e-33 148.7 272 37.9
AL1G38370 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 2.6e-32 144.1 116 62.9
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 1.3e-31 141.7 84 78.6
BraA07t29105Z Brassica rapa HOM05D004011 ORTHO05D005290 3.3e-27 127.1 125 53.6
BolC7t42514H Brassica oleracea HOM05D004011 ORTHO05D005290 2.8e-26 124.0 164 47.0
Cfa021096 Carpinus fangiana HOM05D004011 ORTHO05D000073 8.2e-26 122.5 93 68.8
Duzib268G0988 Durio zibethinus HOM05D004011 ORTHO05D005290 8.2e-26 122.5 95 65.3
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 2.7e-24 117.5 120 51.7
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 4.5e-24 116.7 56 94.6
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 3.8e-23 113.6 76 63.2
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 8.5e-23 112.5 125 52.0
BolC5t31070H Brassica oleracea HOM05D004011 ORTHO05D005290 8.5e-23 112.5 76 63.2
C07p19950 Brassica napus HOM05D004011 ORTHO05D005290 2.5e-22 110.9 167 44.9
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 4.2e-22 110.2 114 51.8
RcHm_v2.0_Chr7g0206221 Rosa chinensis HOM05D004011 ORTHO05D005290 1.0e-20 105.5 57 71.9
BcaB04g18716 Brassica carinata HOM05D000040 ORTHO05D005442 8.8e-20 102.4 81 69.1
BcaB07g32391 Brassica carinata HOM05D026641 ORTHO05D027156 4.4e-19 100.1 100 55.0
BolC5t31074H Brassica oleracea HOM05D004011 ORTHO05D005290 4.4e-19 100.1 80 57.5
SEGI_16255 Sequoiadendron giganteum HOM05D004011 ORTHO05D005290 3.5e-16 90.5 113 42.5
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 2.2e-15 87.8 63 68.3
BolC5t31071H Brassica oleracea HOM05D004011 ORTHO05D005290 5.0e-15 86.7 73 58.9
AL2G16820 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.1e-14 85.5 56 64.3
BolC5t31081H Brassica oleracea HOM05D004011 ORTHO05D005290 1.5e-14 85.1 73 57.5
A07p13320 Brassica napus HOM05D004011 ORTHO05D005290 2.7e-13 80.9 64 60.9
SMO203G0050 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 5.2e-12 76.6 184 28.8
SMO252G0024 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.5e-11 75.1 178 28.7
A07p13600 Brassica napus HOM05D004011 ORTHO05D100703 5.7e-11 73.2 64 53.1
SMO110G0005 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 2.2e-10 71.2 177 28.2
CAN.G1697.3 Capsicum annuum HOM05D013442 ORTHO05D016868 6.3e-10 69.7 149 32.2
BraA07t29103Z Brassica rapa HOM05D001102 ORTHO05D021602 3.1e-09 67.4 49 65.3
A07p13570 Brassica napus HOM05D004011 ORTHO05D006437 3.5e-08 63.9 56 58.9
Nitab4.5_0002852g0030 Nicotiana tabacum HOM05D001347 ORTHO05D001198 2.9e-07 60.8 47 57.4
SMO331G0031 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 8.6e-07 59.3 101 37.6
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.3e-06 57.0 63 42.9
RcHm_v2.0_Chr2g0130381 Rosa chinensis HOM05D000321 ORTHO05D000204 5.6e-06 56.6 39 61.5
SMO331G0015 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 9.5e-06 55.8 63 42.9


User provided reference genes

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