Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr11.1738 Acer truncatum HOM05D004542 ORTHO05D005380 1.9e-71 272.3 131 100.0
TWI09G1372 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 1.3e-43 179.9 130 66.2
Manes.01G033600 Manihot esculenta HOM05D004542 ORTHO05D005380 6.4e-43 177.6 136 64.7
Aa31LG7G8390 Aethionema arabicum HOM05D004542 ORTHO05D005380 1.1e-42 176.8 129 69.8
THA.LOC104808670 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 1.4e-42 176.4 133 66.9
TWI73G0467 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 3.2e-42 175.3 129 65.1
Carub.0001s2428 Capsella rubella HOM05D004542 ORTHO05D005380 9.3e-42 173.7 134 66.4
Cfa004898 Carpinus fangiana HOM05D004542 ORTHO05D005380 9.3e-42 173.7 129 65.9
Potri.008G090100 Populus trichocarpa HOM05D004542 ORTHO05D005380 4.6e-41 171.4 135 63.0
C05p24230 Brassica napus HOM05D004542 ORTHO05D005380 6.0e-41 171.0 136 63.2
BolC5t31159H Brassica oleracea HOM05D004542 ORTHO05D005380 6.0e-41 171.0 136 63.2
Ciclev10033055m.g Citrus clementina HOM05D004542 ORTHO05D005380 7.8e-41 170.6 130 64.6
AL1G38970 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 1.3e-40 169.9 135 65.9
BraA09t39513Z Brassica rapa HOM05D004542 ORTHO05D005380 1.3e-40 169.9 136 63.2
AT1G26740 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 2.3e-40 169.1 135 65.2
RcHm_v2.0_Chr4g0415001 Rosa chinensis HOM05D004542 ORTHO05D005380 2.3e-40 169.1 133 64.7
BcaC06g35127 Brassica carinata HOM05D004542 ORTHO05D005380 3.0e-40 168.7 131 65.6
A07p13070 Brassica napus HOM05D004542 ORTHO05D005380 3.0e-40 168.7 138 63.8
THA.LOC104822040 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 3.0e-40 168.7 132 65.2
BcaB03g14086 Brassica carinata HOM05D004542 ORTHO05D005380 3.9e-40 168.3 134 64.2
A09p40150 Brassica napus HOM05D004542 ORTHO05D005380 3.9e-40 168.3 136 62.5
BraA07t29078Z Brassica rapa HOM05D004542 ORTHO05D005380 5.1e-40 167.9 138 63.0
Duzib248G0510 Durio zibethinus HOM05D004542 ORTHO05D005380 5.1e-40 167.9 135 62.2
Prupe.1G009500 Prunus persica HOM05D004542 ORTHO05D005380 5.1e-40 167.9 126 64.3
Sp5g24560 Schrenkiella parvula HOM05D004542 ORTHO05D005380 5.1e-40 167.9 134 64.2
BcaC05g26392 Brassica carinata HOM05D004542 ORTHO05D005380 8.7e-40 167.2 136 62.5
Thhalv10009076m.g Eutrema salsugineum HOM05D004542 ORTHO05D005380 8.7e-40 167.2 133 63.9
Potri.010G165100 Populus trichocarpa HOM05D004542 ORTHO05D005380 1.1e-39 166.8 132 63.6
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 1.9e-39 166.0 129 64.3
C07p19550 Brassica napus HOM05D004542 ORTHO05D005380 3.3e-39 165.2 136 63.2
BolC7t42472H Brassica oleracea HOM05D004542 ORTHO05D005380 3.3e-39 165.2 136 63.2
MD04G1010200 Malus domestica HOM05D004542 ORTHO05D005380 3.3e-39 165.2 125 65.6
CARHR025220 Cardamine hirsuta HOM05D004542 ORTHO05D005380 4.3e-39 164.9 135 63.7
FvH4_4g13880 Fragaria vesca HOM05D004542 ORTHO05D005380 4.3e-39 164.9 130 61.5
FAN12G3669 Fragaria x ananassa HOM05D004542 ORTHO05D005380 4.3e-39 164.9 130 61.5
FAN07G0300 Fragaria x ananassa HOM05D004542 ORTHO05D005380 9.6e-39 163.7 130 60.8
Thecc.02G341300 Theobroma cacao HOM05D004542 ORTHO05D005380 1.6e-38 162.9 135 60.7
CSS0014017 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 2.1e-38 162.5 135 63.7
CSS0031140 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 2.1e-38 162.5 135 63.7
Duzib251G0803 Durio zibethinus HOM05D004542 ORTHO05D005380 2.8e-38 162.2 135 60.7
Sabra08G0067500 Salix brachista HOM05D004542 ORTHO05D005380 1.8e-37 159.5 147 57.1
FAN22G1961 Fragaria x ananassa HOM05D004542 ORTHO05D005380 1.2e-36 156.8 130 60.0
AL2G28600 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 1.5e-36 156.4 130 63.8
CANSAT21G2357 Cannabis sativa HOM05D004542 ORTHO05D005380 2.0e-36 156.0 127 62.2
Cpa.g.sc69.70 Carica papaya HOM05D004542 ORTHO05D005380 2.0e-36 156.0 129 59.7
Actinidia31969 Actinidia chinensis HOM05D004542 ORTHO05D005380 2.6e-36 155.6 134 61.9
Actinidia17747 Actinidia chinensis HOM05D004542 ORTHO05D005380 4.4e-36 154.8 134 62.7
RcHm_v2.0_Chr4g0414951 Rosa chinensis HOM05D004542 ORTHO05D005380 4.4e-36 154.8 135 60.0
RcHm_v2.0_Chr6g0251041 Rosa chinensis HOM05D004542 ORTHO05D005380 5.8e-36 154.5 126 61.9
QL05p050003 Quercus lobata HOM05D004542 ORTHO05D005380 2.9e-35 152.1 135 59.3
Solyc04g005590.3 Solanum lycopersicum HOM05D004542 ORTHO05D005380 3.8e-35 151.8 132 59.1
PGR083G2602 Punica granatum HOM05D004542 ORTHO05D005380 6.4e-35 151.0 131 60.3
TAR622G0172 Trochodendron aralioides HOM05D004542 ORTHO05D005380 8.4e-35 150.6 130 59.2
ECA233G6069 Erigeron canadensis HOM05D004542 ORTHO05D005380 1.4e-34 149.8 125 57.6
MSTRG.2336 Avicennia marina HOM05D004542 ORTHO05D005380 1.9e-34 149.4 134 57.5
Sopen04g001630 Solanum pennellii HOM05D004542 ORTHO05D005380 5.4e-34 147.9 126 59.5
Migut.L01259 Erythranthe guttata HOM05D004542 ORTHO05D005380 9.3e-34 147.1 134 59.0
Gohir.A07G047800 Gossypium hirsutum HOM05D004542 ORTHO05D005380 1.2e-33 146.7 139 58.3
Lsat_1_v5_gn_8_48901 Lactuca sativa HOM05D004542 ORTHO05D005380 1.6e-33 146.4 125 55.2
CiPaw.06G087700 Carya illinoinensis HOM05D004542 ORTHO05D005380 2.1e-33 146.0 114 61.4
Gohir.D07G052100 Gossypium hirsutum HOM05D004542 ORTHO05D005380 6.0e-33 144.4 139 58.3
Cc00_g16630 Coffea canephora HOM05D004542 ORTHO05D005380 7.9e-33 144.1 126 61.1
Gorai.001G055100 Gossypium raimondii HOM05D004542 ORTHO05D005380 1.0e-32 143.7 141 57.4
Cpa.g.sc57.38 Carica papaya HOM05D004542 ORTHO05D005380 1.3e-32 143.3 114 59.6
PGSC0003DMG400002854 Solanum tuberosum HOM05D004542 ORTHO05D005380 1.7e-32 142.9 132 56.8
Peaxi162Scf00222g00329 Petunia axillaris HOM05D004542 ORTHO05D005380 8.7e-32 140.6 125 60.8
Nitab4.5_0000391g0330 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.1e-31 140.2 121 62.0
Nitab4.5_0013306g0010 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.9e-31 139.4 122 59.8
HanXRQChr12g0361941 Helianthus annuus HOM05D004542 ORTHO05D005380 7.4e-31 137.5 113 58.4
Sed0021036 Sechium edule HOM05D004542 ORTHO05D005380 3.6e-30 135.2 129 52.7
Hma1.2p1_0357F.1_g134240 Hydrangea macrophylla HOM05D004542 ORTHO05D005380 8.1e-30 134.0 83 73.5
Aqoxy3G03464 Aquilegia oxysepala HOM05D004542 ORTHO05D005380 2.4e-29 132.5 125 56.8
Sc03g0001820 Simmondsia chinensis HOM05D004542 ORTHO05D005380 2.4e-29 132.5 125 55.2
Peaxi162Scf00023g02531 Petunia axillaris HOM05D004542 ORTHO05D005380 3.1e-29 132.1 125 58.4
Sc14g0007580 Simmondsia chinensis HOM05D004542 ORTHO05D005380 3.1e-29 132.1 123 55.3
ClCG05G024060 Citrullus lanatus HOM05D004542 ORTHO05D005380 5.3e-29 131.3 129 49.6
Glyma.05G118100 Glycine max HOM05D004542 ORTHO05D005380 1.2e-28 130.2 124 53.2
AUR62031723 Chenopodium quinoa HOM05D004542 ORTHO05D005380 1.5e-28 129.8 124 54.8
HanXRQChr15g0476941 Helianthus annuus HOM05D004542 ORTHO05D005380 1.5e-28 129.8 100 63.0
TPR.G5742 Trifolium pratense HOM05D004542 ORTHO05D005380 2.0e-28 129.4 124 53.2
Oeu001710.1 Olea europaea HOM05D004542 ORTHO05D005380 2.6e-28 129.0 133 57.1
Psat0s1693g0080 Pisum sativum HOM05D004542 ORTHO05D005380 2.6e-28 129.0 124 52.4
Haze_11968 Corylus avellana HOM05D004542 ORTHO05D005380 4.5e-28 128.3 105 61.9
Sp1g22070 Schrenkiella parvula HOM05D004542 ORTHO05D005380 5.8e-28 127.9 114 60.5
Solyc05g013190.4 Solanum lycopersicum HOM05D004542 ORTHO05D005380 9.9e-28 127.1 127 57.5
Sopen05g007930 Solanum pennellii HOM05D004542 ORTHO05D005380 9.9e-28 127.1 127 58.3
Eucgr.D00185 Eucalyptus grandis HOM05D004542 ORTHO05D005380 1.3e-27 126.7 104 58.7
Phvul.002G208200 Phaseolus vulgaris HOM05D004542 ORTHO05D005380 2.9e-27 125.6 126 52.4
PSO063G3361 Papaver somniferum HOM05D004542 ORTHO05D005380 3.8e-27 125.2 126 55.6
MELO3C012119.2 Cucumis melo HOM05D004542 ORTHO05D005380 4.9e-27 124.8 135 48.9
COL.COLO4_32021 Corchorus olitorius HOM05D004542 ORTHO05D005380 6.4e-27 124.4 113 61.1
CsaV3_5G032980 Cucumis sativus L. HOM05D004542 ORTHO05D005380 1.1e-26 123.6 131 49.6
Glyma.08G073000 Glycine max HOM05D004542 ORTHO05D005380 1.1e-26 123.6 124 51.6
Ca_18347_v3 Cicer arietinum L. HOM05D004542 ORTHO05D005380 1.4e-26 123.2 126 50.8
VMungo0251G2924 Vigna mungo HOM05D004542 ORTHO05D005380 1.4e-26 123.2 131 49.6
ECA246G0207 Erigeron canadensis HOM05D004542 ORTHO05D005380 4.2e-26 121.7 128 50.0
Nn3g17306 Nelumbo nucifera HOM05D004542 ORTHO05D005380 4.2e-26 121.7 92 65.2
SalBow1G8597 Salvia bowleyana HOM05D004542 ORTHO05D005380 4.2e-26 121.7 127 52.0
EL10Ac2g02750 Beta vulgaris HOM05D004542 ORTHO05D005380 5.5e-26 121.3 105 58.1
SGA_v2.0_scaffold455G51899 Striga asiatica HOM05D004542 ORTHO05D005380 5.5e-26 121.3 127 55.1
MBI02_g20485_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 7.1e-26 120.9 126 50.8
Medtr1g025320 Medicago truncatula HOM05D004542 ORTHO05D005380 7.1e-26 120.9 99 59.6
CANSAT21G0056 Cannabis sativa HOM05D004542 ORTHO05D005380 2.1e-25 119.4 110 59.1
Lalb_Chr10g0097781 Lupinus albus HOM05D004542 ORTHO05D005380 3.5e-25 118.6 129 48.8
Nitab4.5_0001077g0020 Nicotiana tabacum HOM05D004542 ORTHO05D005380 3.5e-25 118.6 154 48.1
arahy.Tifrunner.gnm1.ann1.53F0XR Arachis hypogaea HOM05D004542 ORTHO05D005380 6.0e-25 117.9 130 48.5
arahy.Tifrunner.gnm1.ann1.H527P9 Arachis hypogaea HOM05D004542 ORTHO05D005380 6.0e-25 117.9 130 48.5
Nn3g18387 Nelumbo nucifera HOM05D004542 ORTHO05D005380 6.0e-25 117.9 126 53.2
TPR.G8852 Trifolium pratense HOM05D004542 ORTHO05D005380 1.0e-24 117.1 124 50.0
Manes.05G105400 Manihot esculenta HOM05D004542 ORTHO05D005380 1.3e-24 116.7 112 52.7
DCAR_027429 Daucus carota HOM05D004542 ORTHO05D005380 3.9e-24 115.2 176 42.0
CDE04G0708 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 6.7e-24 114.4 129 48.1
SalBow1G7833 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.1e-23 113.6 128 50.8
Lj4g0012875 Lotus japonicus HOM05D004542 ORTHO05D005380 1.5e-23 113.2 124 48.4
SalBow1G4390 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.9e-23 112.8 100 56.0
Ah.08g212630 Amaranthus hybridus HOM05D004542 ORTHO05D005380 2.5e-23 112.5 120 50.8
AUR62032610 Chenopodium quinoa HOM05D004542 ORTHO05D005380 3.3e-23 112.1 165 41.2
Rhsim05G0092000 Rhododendron simsii HOM05D004542 ORTHO05D005380 1.3e-22 110.2 112 57.1
RhsimUnG0183400 Rhododendron simsii HOM05D004542 ORTHO05D005380 1.3e-22 110.2 112 57.1
Ciclev10013639m.g Citrus clementina HOM05D004542 ORTHO05D005380 1.6e-22 109.8 132 49.2
Glyma.06G320500 Glycine max HOM05D004542 ORTHO05D005380 2.8e-22 109.0 121 51.2
AT1G69485 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 1.1e-21 107.1 57 82.5
Oeu054854.1 Olea europaea HOM05D004542 ORTHO05D005380 2.4e-21 105.9 110 57.3
CDE07G0585 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 3.1e-21 105.5 92 56.5
Lj4g0007672 Lotus japonicus HOM05D004542 ORTHO05D005380 6.9e-21 104.4 124 46.0
SalBow1G1756 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.2e-20 103.6 57 77.2
Hund04421 Selenicereus undatus HOM05D004542 ORTHO05D005380 2.6e-20 102.4 109 54.1
Zm00001eb402400 Zea mays HOM05D004542 ORTHO05D005380 7.6e-20 100.9 86 58.1
Os10g0407100 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 1.7e-19 99.8 95 53.7
MD13G1284400 Malus domestica HOM05D002269 ORTHO05D005380 2.9e-19 99.0 64 75.0
Os03g0168900 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 2.9e-19 99.0 52 76.9
Carub.0002s1610 Capsella rubella HOM05D004542 ORTHO05D005380 3.0e-16 89.0 44 86.4
Sabra10G0125700 Salix brachista HOM05D004542 ORTHO05D005380 3.0e-16 89.0 95 52.6
Sopen03g017060 Solanum pennellii HOM05D004542 ORTHO05D005380 6.7e-16 87.8 58 63.8
Mapoly0152s0024 Marchantia polymorpha HOM05D004542 ORTHO05D005380 3.3e-15 85.5 51 66.7
COL.COLO4_27991 Corchorus olitorius HOM05D004542 ORTHO05D005380 1.6e-14 83.2 102 50.0
Pp3c1_32410 Physcomitrium patens HOM05D004542 ORTHO05D005380 2.1e-14 82.8 129 38.8
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 3.7e-14 82.0 50 64.0
PSO782G1969 Papaver somniferum HOM05D004542 ORTHO05D005380 4.8e-14 81.6 109 47.7
Nitab4.5_0000014g0150 Nicotiana tabacum HOM05D004542 ORTHO05D005380 5.3e-13 78.2 142 40.8
AagrBONN_evm.TU.Sc2ySwM_228.5417 Anthoceros agrestis HOM05D004542 ORTHO05D005380 6.9e-13 77.8 124 40.3
COL.COLO4_27990 Corchorus olitorius HOM05D004542 ORTHO05D005380 2.6e-12 75.9 82 52.4
Glyma.04G115800 Glycine max HOM05D004542 ORTHO05D005380 1.3e-11 73.6 71 57.7
SMO358G0607 Selaginella moellendorffii HOM05D000228 ORTHO05D005112 2.9e-11 72.4 49 61.2
MBI02_g44667_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 5.5e-10 68.2 100 43.0
Zm00001eb005320 Zea mays HOM05D004542 ORTHO05D005380 3.5e-09 65.5 40 70.0
unitig_8.g3954 Utricularia gibba HOM05D006796 ORTHO05D008615 3.0e-08 62.4 37 75.7
MCO02G272 Micromonas commoda HOM05D004542 ORTHO05D005380 6.7e-08 61.2 106 38.7
vmacro01351 Vaccinium macrocarpon HOM05D004542 ORTHO05D005380 1.9e-07 59.7 87 43.7
PGSC0003DMG400005564 Solanum tuberosum HOM05D004542 ORTHO05D005380 9.7e-07 57.4 67 56.7
SEGI_34151 Sequoiadendron giganteum HOM05D004542 ORTHO05D005380 2.8e-06 55.8 84 41.7
CBR_g39054 Chara braunii HOM05D004542 ORTHO05D005380 3.7e-06 55.5 97 35.1


User provided reference genes

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