Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr11.1648 Acer truncatum HOM05D000470 ORTHO05D051885 6.9e-53 210.3 101 100.0
Atru.chr11.1623 Acer truncatum HOM05D000470 ORTHO05D000348 1.5e-31 139.4 67 100.0
Ciclev10031664m.g Citrus clementina HOM05D000470 ORTHO05D000348 3.3e-15 85.1 71 64.8
Duzib251G0215 Durio zibethinus HOM05D000470 ORTHO05D000348 2.4e-13 79.0 85 54.1
Eucgr.B03148 Eucalyptus grandis HOM05D000470 ORTHO05D000348 1.6e-12 76.3 71 56.3
Gohir.A12G161100 Gossypium hirsutum HOM05D000470 ORTHO05D000348 1.6e-12 76.3 85 51.8
Gohir.D12G164400 Gossypium hirsutum HOM05D000470 ORTHO05D000348 1.6e-12 76.3 85 51.8
Gorai.008G177000 Gossypium raimondii HOM05D000470 ORTHO05D000348 1.6e-12 76.3 85 51.8
Lj2g0001701 Lotus japonicus HOM05D000470 ORTHO05D000348 2.0e-12 75.9 86 44.2
QL03p074094 Quercus lobata HOM05D000470 ORTHO05D000348 4.5e-12 74.7 62 61.3
Potri.010G158100 Populus trichocarpa HOM05D000470 ORTHO05D000348 1.3e-11 73.2 87 51.7
Prupe.1G287300 Prunus persica HOM05D000470 ORTHO05D000348 1.3e-11 73.2 72 56.9
CANSAT64G0217 Cannabis sativa HOM05D000470 ORTHO05D000348 1.7e-11 72.8 72 56.9
Potri.008G096200 Populus trichocarpa HOM05D000470 ORTHO05D000348 2.2e-11 72.4 70 58.6
Haze_11906 Corylus avellana HOM05D000470 ORTHO05D000348 2.9e-11 72.0 72 55.6
CiPaw.05G124900 Carya illinoinensis HOM05D000470 ORTHO05D000348 3.8e-11 71.6 76 55.3
Cfa008878 Carpinus fangiana HOM05D000470 ORTHO05D000348 6.5e-11 70.9 72 54.2
Thecc.02G330200 Theobroma cacao HOM05D000470 ORTHO05D000348 6.5e-11 70.9 85 50.6
Glyma.02G117100 Glycine max HOM05D000470 ORTHO05D000348 1.1e-10 70.1 68 50.0
Lalb_Chr10g0098871 Lupinus albus HOM05D000470 ORTHO05D000348 1.1e-10 70.1 68 52.9
Cpa.g.sc1.127 Carica papaya HOM05D000470 ORTHO05D000348 1.9e-10 69.3 55 58.2
Ca_04977_v3 Cicer arietinum L. HOM05D000470 ORTHO05D000348 1.9e-10 69.3 78 46.2
MD13G1062600 Malus domestica HOM05D000470 ORTHO05D000348 1.9e-10 69.3 56 67.9
ClCG08G010430 Citrullus lanatus HOM05D000470 ORTHO05D000348 2.5e-10 68.9 61 57.4
Duzib268G1006 Durio zibethinus HOM05D000470 ORTHO05D000348 2.5e-10 68.9 85 48.2
Manes.05G110400 Manihot esculenta HOM05D000470 ORTHO05D000348 2.5e-10 68.9 67 59.7
Sabra10G0120100 Salix brachista HOM05D000470 ORTHO05D000348 2.5e-10 68.9 87 49.4
PGR102G0383 Punica granatum HOM05D000470 ORTHO05D000348 4.2e-10 68.2 70 54.3
Carub.0005s0276 Capsella rubella HOM05D000470 ORTHO05D000348 5.5e-10 67.8 74 48.6
CsaV3_6G033700 Cucumis sativus L. HOM05D000470 ORTHO05D000348 5.5e-10 67.8 47 66.0
Dinv34067 Davidia involucrata HOM05D000470 ORTHO05D000348 5.5e-10 67.8 76 53.9
QL03p074176 Quercus lobata HOM05D000470 ORTHO05D000348 5.5e-10 67.8 62 56.5
Sabra08G0072500 Salix brachista HOM05D000470 ORTHO05D044971 5.5e-10 67.8 55 65.5
Sed0007156 Sechium edule HOM05D000470 ORTHO05D000348 5.5e-10 67.8 47 66.0
VMungo1215G1535 Vigna mungo HOM05D000470 ORTHO05D000348 5.5e-10 67.8 68 48.5
MD16G1060900 Malus domestica HOM05D000470 ORTHO05D000348 1.2e-09 66.6 74 58.1
AL5G13400 Arabidopsis lyrata HOM05D000470 ORTHO05D000348 1.6e-09 66.2 74 47.3
AT2G03620 Arabidopsis thaliana HOM05D000470 ORTHO05D000348 2.1e-09 65.9 74 47.3
EL10Ac6g15000 Beta vulgaris HOM05D000470 ORTHO05D000348 2.1e-09 65.9 48 62.5
Phvul.003G042200 Phaseolus vulgaris HOM05D000470 ORTHO05D000348 2.1e-09 65.9 71 47.9
Dinv16735 Davidia involucrata HOM05D000470 ORTHO05D000348 2.7e-09 65.5 59 62.7
Nn3g17454 Nelumbo nucifera HOM05D000470 ORTHO05D000348 2.7e-09 65.5 57 59.6
CARHR145970 Cardamine hirsuta HOM05D000470 ORTHO05D000348 3.6e-09 65.1 74 47.3
COL.COLO4_27879 Corchorus olitorius HOM05D000470 ORTHO05D000348 3.6e-09 65.1 69 52.2
Medtr5g045590 Medicago truncatula HOM05D000470 ORTHO05D000348 3.6e-09 65.1 63 52.4
A06p43030 Brassica napus HOM05D000470 ORTHO05D000348 4.7e-09 64.7 74 45.9
C07p34000 Brassica napus HOM05D000470 ORTHO05D000348 4.7e-09 64.7 74 45.9
BolC7t43914H Brassica oleracea HOM05D000470 ORTHO05D000348 4.7e-09 64.7 74 45.9
Thhalv10004291m.g Eutrema salsugineum HOM05D000470 ORTHO05D000348 4.7e-09 64.7 74 45.9
Sp2g14460 Schrenkiella parvula HOM05D000470 ORTHO05D000348 6.1e-09 64.3 74 45.9
Sopen05g007050 Solanum pennellii HOM05D000470 ORTHO05D000348 8.0e-09 63.9 52 65.4
PSO478G2191 Papaver somniferum HOM05D000470 ORTHO05D000348 1.4e-08 63.2 89 43.8
Rhsim09G0127100 Rhododendron simsii HOM05D000470 ORTHO05D000348 1.4e-08 63.2 76 55.3
TAR622G0171 Trochodendron aralioides HOM05D000470 ORTHO05D000348 1.4e-08 63.2 74 48.6
ECA233G0325 Erigeron canadensis HOM05D000470 ORTHO05D000348 1.8e-08 62.8 75 46.7
Lj6A778T63 Lonicera japonica HOM05D000470 ORTHO05D000348 1.8e-08 62.8 56 62.5
Psat2g130680 Pisum sativum HOM05D000470 ORTHO05D000348 1.8e-08 62.8 49 57.1
vmacro10427 Vaccinium macrocarpon HOM05D000470 ORTHO05D000348 1.8e-08 62.8 78 50.0
Ah.02g126860 Amaranthus hybridus HOM05D000470 ORTHO05D000348 2.3e-08 62.4 48 56.2
arahy.Tifrunner.gnm1.ann1.7VY84B Arachis hypogaea HOM05D000470 ORTHO05D000348 2.3e-08 62.4 78 42.3
AUR62003096 Chenopodium quinoa HOM05D000470 ORTHO05D000348 2.3e-08 62.4 48 56.2
AUR62007914 Chenopodium quinoa HOM05D000470 ORTHO05D000348 2.3e-08 62.4 48 56.2
MBI16_g11614_MAGBIO Magnolia biondii HOM05D000470 ORTHO05D000348 2.3e-08 62.4 48 64.6
Solyc05g012220.3 Solanum lycopersicum HOM05D000470 ORTHO05D000348 3.0e-08 62.0 53 62.3
Manes.01G027400 Manihot esculenta HOM05D000470 ORTHO05D000348 4.0e-08 61.6 54 63.0
Actinidia13392 Actinidia chinensis HOM05D000470 ORTHO05D000348 5.2e-08 61.2 59 57.6
arahy.Tifrunner.gnm1.ann1.W1VPD8 Arachis hypogaea HOM05D000470 ORTHO05D000348 5.2e-08 61.2 68 45.6
CSS0034450 Camellia sinensis var. sinensis HOM05D000470 ORTHO05D000348 5.2e-08 61.2 64 54.7
Actinidia16163 Actinidia chinensis HOM05D000470 ORTHO05D000348 8.8e-08 60.5 64 56.2
PSO017G6589 Papaver somniferum HOM05D000470 ORTHO05D000348 8.8e-08 60.5 77 49.4
Peaxi162Scf00175g00213 Petunia axillaris HOM05D000470 ORTHO05D000348 1.5e-07 59.7 57 56.1
TPR.G24429 Trifolium pratense HOM05D000470 ORTHO05D000348 1.5e-07 59.7 54 51.9
Nitab4.5_0000231g0250 Nicotiana tabacum HOM05D000470 ORTHO05D000348 2.0e-07 59.3 44 68.2
THA.LOC104801820 Tarenaya hassleriana HOM05D000470 ORTHO05D000348 2.0e-07 59.3 76 42.1
Aqoxy3G03688 Aquilegia oxysepala HOM05D000470 ORTHO05D000348 2.6e-07 58.9 48 54.2
CAN.G707.2 Capsicum annuum HOM05D000470 ORTHO05D000348 2.6e-07 58.9 44 63.6
Cc11_g11940 Coffea canephora HOM05D000470 ORTHO05D000348 2.6e-07 58.9 55 56.4
Aa31LG2G7050 Aethionema arabicum HOM05D000470 ORTHO05D000348 3.3e-07 58.5 69 47.8
Nitab4.5_0009585g0030 Nicotiana tabacum HOM05D000470 ORTHO05D000348 3.3e-07 58.5 44 65.9
Migut.L01188 Erythranthe guttata HOM05D000470 ORTHO05D000348 5.7e-07 57.8 79 44.3
FAN07G1243 Fragaria x ananassa HOM05D000470 ORTHO05D000348 5.7e-07 57.8 73 52.1
HanXRQChr08g0211711 Helianthus annuus HOM05D000470 ORTHO05D000348 5.7e-07 57.8 72 47.2
Lsat_1_v5_gn_8_46361 Lactuca sativa HOM05D000470 ORTHO05D000348 5.7e-07 57.8 85 43.5
Sc04g0007560 Simmondsia chinensis HOM05D000470 ORTHO05D000348 5.7e-07 57.8 67 44.8
FvH4_4g30000 Fragaria vesca HOM05D000470 ORTHO05D000348 7.5e-07 57.4 74 51.4
FAN12G0013 Fragaria x ananassa HOM05D000470 ORTHO05D000348 7.5e-07 57.4 74 51.4
FAN22G0715 Fragaria x ananassa HOM05D000470 ORTHO05D000348 7.5e-07 57.4 74 51.4
Lj3A1030T107 Lonicera japonica HOM05D000470 ORTHO05D000348 7.5e-07 57.4 57 57.9
DCAR_026676 Daucus carota HOM05D000470 ORTHO05D000348 1.3e-06 56.6 47 59.6
TWI31G0545 Tripterygium wilfordii HOM05D000470 ORTHO05D000348 1.7e-06 56.2 38 68.4
ATR0177G038 Amborella trichopoda HOM05D000470 ORTHO05D000348 3.7e-06 55.1 70 45.7
Gohir.A06G114600 Gossypium hirsutum HOM05D000470 ORTHO05D000348 6.3e-06 54.3 39 61.5
Gohir.D06G119200 Gossypium hirsutum HOM05D000470 ORTHO05D000348 6.3e-06 54.3 39 61.5
Gorai.010G136800 Gossypium raimondii HOM05D000470 ORTHO05D000348 6.3e-06 54.3 39 61.5
SalBow2G2459 Salvia bowleyana HOM05D000470 ORTHO05D000348 6.3e-06 54.3 75 41.3
Pp3c8_23170 Physcomitrium patens HOM05D000470 ORTHO05D000348 8.2e-06 53.9 63 46.0


User provided reference genes

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