Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 2.8e-230 801.6 403 100.0
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 2.8e-230 801.6 403 100.0
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 5.8e-127 458.4 415 65.1
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 4.3e-122 442.2 415 61.9
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 8.1e-121 438.0 435 61.4
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 9.9e-119 431.0 416 61.3
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 2.2e-118 429.9 440 62.0
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 4.9e-118 428.7 411 62.8
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 1.9e-117 426.8 405 60.5
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 2.8e-113 412.9 402 62.4
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 4.5e-111 405.6 426 57.5
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 4.9e-110 402.1 403 61.3
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 2.4e-109 399.8 409 60.1
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 6.0e-108 395.2 434 56.0
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 1.3e-105 387.5 419 57.8
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 8.1e-105 384.8 402 56.5
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 5.3e-104 382.1 417 59.0
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.2e-103 380.9 419 57.0
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.5e-103 380.6 419 57.0
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.5e-103 380.6 425 56.5
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 1.4e-101 374.0 413 55.4
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 2.4e-101 373.2 408 56.9
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 7.9e-100 368.2 429 53.8
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 2.3e-99 366.7 418 56.2
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 8.7e-99 364.8 405 57.8
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 4.3e-98 362.5 409 56.7
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.1e-97 360.1 409 56.5
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 8.2e-97 358.2 411 53.8
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.0e-95 353.6 408 56.1
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 4.9e-94 349.0 429 51.7
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 6.5e-94 348.6 418 54.3
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 3.2e-93 346.3 417 54.9
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 4.2e-93 345.9 435 50.1
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 5.5e-93 345.5 415 54.2
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 5.5e-93 345.5 412 55.1
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 3.0e-91 339.7 416 51.4
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 3.0e-91 339.7 416 51.4
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 2.5e-90 336.7 416 53.8
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 2.8e-89 333.2 411 54.7
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 6.9e-88 328.6 432 49.8
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 2.6e-87 326.6 429 51.3
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 1.7e-86 323.9 425 52.7
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 5.1e-83 312.4 416 49.0
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 6.7e-83 312.0 428 50.7
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.5e-82 310.8 436 50.0
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 1.9e-82 310.5 391 51.4
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 7.4e-82 308.5 426 49.8
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 9.7e-82 308.1 427 49.6
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 8.2e-81 305.1 432 48.4
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 4.1e-80 302.8 437 49.0
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 9.1e-80 301.6 353 54.1
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 7.7e-79 298.5 389 48.3
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 5.0e-78 295.8 394 50.0
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 8.5e-78 295.0 393 49.9
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 8.5e-78 295.0 393 49.9
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 1.2e-76 291.2 452 44.7
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 7.9e-76 288.5 444 46.4
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 7.4e-74 282.0 393 48.9
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 1.4e-72 277.7 414 47.6
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 7.7e-71 271.9 423 48.2
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 1.7e-70 270.8 400 46.0
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 5.0e-70 269.2 383 49.6
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 1.4e-69 267.7 399 44.6
Haze_11818 Corylus avellana HOM05D004568 ORTHO05D005343 8.8e-67 258.5 254 61.8
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 4.1e-64 249.6 437 44.2
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 1.7e-62 244.2 402 41.0
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 2.9e-62 243.4 406 42.9
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 2.5e-61 240.4 398 42.5
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 2.5e-61 240.4 266 54.9
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 4.7e-60 236.1 412 41.5
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.0e-59 235.0 415 40.0
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 6.7e-59 232.3 438 40.9
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 6.7e-59 232.3 395 41.0
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 8.8e-59 231.9 410 43.2
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 2.6e-58 230.3 390 42.3
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 9.7e-58 228.4 324 48.1
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 8.2e-57 225.3 404 40.1
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 1.8e-56 224.2 411 43.3
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 3.1e-56 223.4 429 40.1
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 7.0e-56 222.2 489 39.5
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 1.6e-55 221.1 405 40.0
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 2.0e-55 220.7 433 41.3
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 4.5e-55 219.5 402 42.3
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 4.5e-55 219.5 404 40.3
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 5.9e-55 219.2 470 40.2
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 2.2e-54 217.2 400 38.8
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 7.2e-53 212.2 489 36.8
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 2.0e-50 204.1 408 39.7
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 5.7e-50 202.6 386 40.4
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 9.8e-50 201.8 426 38.3
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 1.3e-49 201.4 390 40.0
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 1.3e-49 201.4 390 40.0
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 1.8e-48 197.6 403 39.2
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 2.4e-48 197.2 409 39.1
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 7.0e-48 195.7 448 37.1
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 9.1e-48 195.3 443 36.3
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 1.2e-47 194.9 483 36.4
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 1.2e-47 194.9 443 35.9
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 1.2e-47 194.9 448 37.1
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 2.7e-47 193.7 440 37.3
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 1.3e-46 191.4 448 35.9
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 1.3e-46 191.4 402 40.3
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 1.2e-44 184.9 469 34.5
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 2.1e-44 184.1 400 39.8
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 2.1e-44 184.1 401 39.9
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 1.8e-43 181.0 386 37.8
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 2.0e-42 177.6 419 35.1
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 4.4e-42 176.4 399 39.3
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 4.4e-42 176.4 399 39.3
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 5.7e-42 176.0 416 36.3
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 5.7e-42 176.0 416 36.3
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 2.2e-41 174.1 402 39.1
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 2.8e-41 173.7 384 36.7
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 8.3e-41 172.2 384 36.2
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 1.1e-40 171.8 402 36.8
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 3.1e-40 170.2 398 36.4
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 5.4e-40 169.5 432 34.7
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 3.5e-39 166.8 432 34.5
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 4.5e-39 166.4 407 33.9
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 1.3e-38 164.9 261 44.4
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 1.7e-38 164.5 418 34.9
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 3.8e-38 163.3 403 32.5
BcaB07g30266 Brassica carinata HOM05D004568 ORTHO05D005343 2.5e-37 160.6 448 34.4
BcaC06g31131 Brassica carinata HOM05D004568 ORTHO05D005343 3.3e-37 160.2 444 32.7
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 1.2e-36 158.3 419 35.3
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 1.2e-36 158.3 133 64.7
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 1.2e-36 158.3 307 39.1
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 1.6e-36 157.9 482 34.9
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 8.0e-36 155.6 419 34.8
Actinidia37881 Actinidia chinensis HOM05D004568 ORTHO05D005343 6.4e-33 146.0 300 37.0
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 2.7e-31 140.6 435 32.0
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 6.0e-31 139.4 371 35.3
Ah.04g164810 Amaranthus hybridus HOM05D004568 ORTHO05D005343 1.3e-30 138.3 404 32.9
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 2.5e-29 134.0 210 42.4
Carub.0005s0337 Capsella rubella HOM05D004568 ORTHO05D005343 1.2e-28 131.7 464 32.5
vmacro10495 Vaccinium macrocarpon HOM05D004568 ORTHO05D005343 1.2e-28 131.7 391 33.0
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 1.6e-28 131.3 394 33.5
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 2.1e-28 131.0 394 33.5
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 3.6e-28 130.2 221 42.5
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 3.6e-28 130.2 321 35.5
Lj3P1023T52 Lonicera japonica HOM05D004568 ORTHO05D005343 3.6e-28 130.2 235 43.0
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 1.8e-27 127.9 199 40.7
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 4.0e-27 126.7 393 33.6
Nitab4.5_0012448g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 2.6e-26 124.0 305 38.7
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 3.7e-25 120.2 404 30.2
Ah.06g195100 Amaranthus hybridus HOM05D004568 ORTHO05D005343 7.3e-21 105.9 436 30.3
unitig_26.g10277 Utricularia gibba HOM05D004568 ORTHO05D005343 1.1e-19 102.1 185 36.2
ECA233G1390 Erigeron canadensis HOM05D004568 ORTHO05D005343 3.1e-19 100.5 330 31.5
SEGI_17788 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 2.0e-18 97.8 103 52.4
Actinidia30170 Actinidia chinensis HOM05D004568 ORTHO05D005343 2.4e-16 90.9 108 49.1
CDE04G2720 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 3.9e-14 83.6 121 41.3
unitig_699.g19898 Utricularia gibba HOM05D004568 ORTHO05D005343 3.3e-13 80.5 127 39.4
Ah.12g062580 Amaranthus hybridus HOM05D004568 ORTHO05D005343 6.2e-12 76.3 177 37.9
SEGI_26556 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 5.2e-11 73.2 138 37.7
Haze_07821 Corylus avellana HOM05D004568 ORTHO05D005343 3.2e-08 63.9 63 60.3
SGA_v2.0_scaffold14G06784 Striga asiatica HOM05D001314 ORTHO05D001165 9.2e-08 62.4 143 32.9
Haze_13037 Corylus avellana HOM05D004568 ORTHO05D005343 1.6e-07 61.6 79 51.9
Hma1.2p1_0337F.1_g129430 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 2.1e-07 61.2 151 35.8
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 8.7e-06 55.8 140 32.1


User provided reference genes

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