Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr11.1333 Acer truncatum HOM05D003846 ORTHO05D004726 9.6e-86 320.1 158 100.0
Cpa.g.sc1.209 Carica papaya HOM05D003846 ORTHO05D004726 1.3e-74 283.1 159 87.4
TAR374G1390 Trochodendron aralioides HOM05D003846 ORTHO05D004726 1.3e-74 283.1 159 86.8
TAR622G0464 Trochodendron aralioides HOM05D003846 ORTHO05D004726 3.8e-74 281.6 159 85.5
Gohir.A13G053526 Gossypium hirsutum HOM05D003846 ORTHO05D004726 1.0e-71 273.5 159 83.0
Manes.06G071100 Manihot esculenta HOM05D003846 ORTHO05D004726 1.8e-71 272.7 159 86.8
Potri.010G128500 Populus trichocarpa HOM05D003846 ORTHO05D004726 1.8e-71 272.7 161 82.6
Duzib251G0345 Durio zibethinus HOM05D003846 ORTHO05D004726 3.9e-71 271.6 159 83.0
Gorai.013G080600 Gossypium raimondii HOM05D003846 ORTHO05D004726 1.1e-70 270.0 159 82.4
CANSAT64G1970 Cannabis sativa HOM05D003846 ORTHO05D004726 2.0e-70 269.2 160 85.0
Ciclev10032968m.g Citrus clementina HOM05D003846 ORTHO05D004726 2.0e-70 269.2 159 84.3
Gohir.D13G070700 Gossypium hirsutum HOM05D003846 ORTHO05D004726 3.3e-70 268.5 159 81.1
Gorai.013G080900 Gossypium raimondii HOM05D003846 ORTHO05D004726 5.7e-70 267.7 159 81.8
Gohir.D13G070400 Gossypium hirsutum HOM05D003846 ORTHO05D004726 7.4e-70 267.3 159 81.1
MD16G1046400 Malus domestica HOM05D003846 ORTHO05D004726 7.4e-70 267.3 159 83.0
Dinv21120 Davidia involucrata HOM05D003846 ORTHO05D004726 1.7e-69 266.2 160 81.9
Sc04g0006620 Simmondsia chinensis HOM05D003846 ORTHO05D004726 2.2e-69 265.8 158 82.9
Prupe.1G306800 Prunus persica HOM05D003846 ORTHO05D004726 2.8e-69 265.4 158 82.9
Gohir.A13G053470 Gossypium hirsutum HOM05D003846 ORTHO05D004726 6.3e-69 264.2 159 81.8
MBI19_g21095_MAGBIO Magnolia biondii HOM05D003846 ORTHO05D004726 8.2e-69 263.8 158 83.5
MD13G1045100 Malus domestica HOM05D003846 ORTHO05D004726 8.2e-69 263.8 159 81.8
THA.LOC104821956 Tarenaya hassleriana HOM05D003846 ORTHO05D004726 1.4e-68 263.1 157 80.9
Thhalv10019264m.g Eutrema salsugineum HOM05D003846 ORTHO05D004726 3.1e-68 261.9 159 79.9
PSO063G1115 Papaver somniferum HOM05D003846 ORTHO05D004726 3.1e-68 261.9 161 82.6
TWI79G0122 Tripterygium wilfordii HOM05D003846 ORTHO05D004726 3.1e-68 261.9 159 80.5
Aqoxy3G00349 Aquilegia oxysepala HOM05D003846 ORTHO05D004726 5.3e-68 261.2 160 81.2
Nn3g17770 Nelumbo nucifera HOM05D003846 ORTHO05D004726 6.9e-68 260.8 160 82.5
Sp5g23760 Schrenkiella parvula HOM05D003846 ORTHO05D004726 6.9e-68 260.8 159 79.2
TWI31G0653 Tripterygium wilfordii HOM05D003846 ORTHO05D004726 9.1e-68 260.4 159 79.9
Lalb_Chr17g0341961 Lupinus albus HOM05D003846 ORTHO05D004726 1.5e-67 259.6 159 78.0
PSO782G3649 Papaver somniferum HOM05D003846 ORTHO05D004726 4.5e-67 258.1 161 82.0
RcHm_v2.0_Chr4g0435651 Rosa chinensis HOM05D003846 ORTHO05D004726 4.5e-67 258.1 158 81.0
CiPaw.16G084800 Carya illinoinensis HOM05D003846 ORTHO05D004726 5.9e-67 257.7 159 81.8
CSS0029565 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 7.7e-67 257.3 159 80.5
Dinv07363 Davidia involucrata HOM05D003846 ORTHO05D004726 7.7e-67 257.3 159 81.1
AUR62002909 Chenopodium quinoa HOM05D003846 ORTHO05D004726 1.0e-66 256.9 158 79.7
Lj2g0005403 Lotus japonicus HOM05D003846 ORTHO05D004726 1.3e-66 256.5 159 80.5
GSVIVG01008253001 Vitis vinifera HOM05D003846 ORTHO05D004726 1.3e-66 256.5 159 81.8
EL10Ac6g14463 Beta vulgaris HOM05D003846 ORTHO05D004726 2.9e-66 255.4 158 77.2
AT1G68660 Arabidopsis thaliana HOM05D003846 ORTHO05D004726 6.5e-66 254.2 160 78.8
Dinv40424 Davidia involucrata HOM05D003846 ORTHO05D004726 6.5e-66 254.2 158 80.4
CiPaw.15G127700 Carya illinoinensis HOM05D003846 ORTHO05D004726 8.5e-66 253.8 159 80.5
Haze_18631 Corylus avellana HOM05D003846 ORTHO05D004726 8.5e-66 253.8 159 80.5
Solyc03g119700.3 Solanum lycopersicum HOM05D003846 ORTHO05D004726 1.1e-65 253.4 159 80.5
Sopen03g038530 Solanum pennellii HOM05D003846 ORTHO05D004726 1.1e-65 253.4 159 80.5
PGSC0003DMG400005627 Solanum tuberosum HOM05D003846 ORTHO05D004726 1.1e-65 253.4 159 80.5
CARHR061470 Cardamine hirsuta HOM05D003846 ORTHO05D004726 1.4e-65 253.1 160 78.1
ClCG05G022950 Citrullus lanatus HOM05D003846 ORTHO05D004726 1.4e-65 253.1 159 78.0
MELO3C012223.2 Cucumis melo HOM05D003846 ORTHO05D004726 2.5e-65 252.3 158 77.2
Ah.02g127070 Amaranthus hybridus HOM05D003846 ORTHO05D004726 3.2e-65 251.9 160 78.8
AL2G27580 Arabidopsis lyrata HOM05D003846 ORTHO05D004726 3.2e-65 251.9 161 77.0
CSS0009272 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 3.2e-65 251.9 159 79.2
Cfa019801 Carpinus fangiana HOM05D003846 ORTHO05D004726 3.2e-65 251.9 159 79.9
Actinidia31024 Actinidia chinensis HOM05D003846 ORTHO05D004726 4.2e-65 251.5 159 80.5
Carub.0002s1520 Capsella rubella HOM05D003846 ORTHO05D004726 4.2e-65 251.5 160 76.9
Glyma.02G098100 Glycine max HOM05D003846 ORTHO05D004726 4.2e-65 251.5 159 79.9
Lalb_Chr10g0099871 Lupinus albus HOM05D003846 ORTHO05D004726 4.2e-65 251.5 159 74.8
BolC2t08590H Brassica oleracea HOM05D003846 ORTHO05D004726 7.2e-65 250.8 159 78.0
Duzib204G0001 Durio zibethinus HOM05D003846 ORTHO05D004726 7.2e-65 250.8 159 77.4
ATR0665G367 Amborella trichopoda HOM05D003846 ORTHO05D004726 9.4e-65 250.4 159 76.1
A02p15260 Brassica napus HOM05D003846 ORTHO05D004726 9.4e-65 250.4 159 78.0
BraA02t06588Z Brassica rapa HOM05D003846 ORTHO05D004726 9.4e-65 250.4 159 78.0
BraA07t30817Z Brassica rapa HOM05D003846 ORTHO05D004726 2.1e-64 249.2 160 76.9
Duzib248G0399 Durio zibethinus HOM05D003846 ORTHO05D004726 2.1e-64 249.2 159 77.4
C06p37450 Brassica napus HOM05D003846 ORTHO05D004726 2.7e-64 248.8 162 77.8
BolC6t38848H Brassica oleracea HOM05D003846 ORTHO05D004726 2.7e-64 248.8 162 77.8
PGR044G0282 Punica granatum HOM05D003846 ORTHO05D004726 2.7e-64 248.8 160 80.6
Cc04_g07410 Coffea canephora HOM05D003846 ORTHO05D004726 3.6e-64 248.4 159 79.2
Glyma.01G084700 Glycine max HOM05D003846 ORTHO05D004726 3.6e-64 248.4 159 78.6
arahy.Tifrunner.gnm1.ann1.72UZVS Arachis hypogaea HOM05D003846 ORTHO05D004726 6.1e-64 247.7 159 78.0
BcaB05g24403 Brassica carinata HOM05D003846 ORTHO05D004726 6.1e-64 247.7 159 78.0
A07p31880 Brassica napus HOM05D003846 ORTHO05D004726 7.9e-64 247.3 162 77.2
Phvul.003G028500 Phaseolus vulgaris HOM05D003846 ORTHO05D004726 7.9e-64 247.3 159 78.0
Sed0019100 Sechium edule HOM05D003846 ORTHO05D004726 7.9e-64 247.3 160 77.5
Ah.03g137840 Amaranthus hybridus HOM05D003846 ORTHO05D004726 1.8e-63 246.1 158 78.5
Hund25092 Selenicereus undatus HOM05D003846 ORTHO05D004726 2.3e-63 245.7 157 78.3
Nitab4.5_0001599g0080 Nicotiana tabacum HOM05D003846 ORTHO05D004726 3.0e-63 245.4 159 78.0
Nitab4.5_0010565g0020 Nicotiana tabacum HOM05D003846 ORTHO05D004726 3.9e-63 245.0 159 78.0
arahy.Tifrunner.gnm1.ann1.6C9V7B Arachis hypogaea HOM05D003846 ORTHO05D004726 6.7e-63 244.2 159 77.4
BcaB03g15438 Brassica carinata HOM05D003846 ORTHO05D004726 6.7e-63 244.2 162 77.2
DCAR_023191 Daucus carota HOM05D003846 ORTHO05D004726 8.8e-63 243.8 159 77.4
ClCG04G011240 Citrullus lanatus HOM05D003846 ORTHO05D004726 1.1e-62 243.4 160 77.5
Actinidia35079 Actinidia chinensis HOM05D003846 ORTHO05D004726 2.0e-62 242.7 159 77.4
MELO3C002078.2 Cucumis melo HOM05D003846 ORTHO05D004726 2.0e-62 242.7 160 78.1
CsaV3_1G006510 Cucumis sativus L. HOM05D003846 ORTHO05D004726 2.0e-62 242.7 160 78.1
Peaxi162Scf00015g00824 Petunia axillaris HOM05D003846 ORTHO05D004726 2.0e-62 242.7 159 77.4
Eucgr.K02665 Eucalyptus grandis HOM05D003846 ORTHO05D004726 4.4e-62 241.5 159 80.5
VMungo1215G1161 Vigna mungo HOM05D003846 ORTHO05D004726 7.4e-62 240.7 159 78.0
Prupe.5G218600 Prunus persica HOM05D003846 ORTHO05D004726 9.7e-62 240.4 157 77.7
Medtr5g054770 Medicago truncatula HOM05D003846 ORTHO05D004726 1.7e-61 239.6 159 74.8
HPP92_016307 Vanilla planifolia HOM05D003846 ORTHO05D004726 1.7e-61 239.6 158 76.6
HPP92_016288 Vanilla planifolia HOM05D003846 ORTHO05D004726 2.8e-61 238.8 158 76.6
CDE11G1133 Ceratophyllum demersum HOM05D003846 ORTHO05D004726 4.8e-61 238.0 161 72.7
Sed0009794 Sechium edule HOM05D003846 ORTHO05D004726 6.3e-61 237.7 157 75.2
CAN.G438.125 Capsicum annuum HOM05D003846 ORTHO05D004726 1.1e-60 236.9 159 74.8
QL10p023733 Quercus lobata HOM05D003846 ORTHO05D004726 2.0e-59 232.6 182 68.1
MD14G1223300 Malus domestica HOM05D003846 ORTHO05D004726 2.6e-59 232.3 157 75.2
COL.COLO4_07882 Corchorus olitorius HOM05D000199 ORTHO05D000550 3.5e-59 231.9 131 86.3
AUR62035268 Chenopodium quinoa HOM05D003846 ORTHO05D004726 4.5e-59 231.5 133 84.2
Glyma.07G089500 Glycine max HOM05D003846 ORTHO05D004726 1.3e-58 229.9 159 74.8
Glyma.09G187300 Glycine max HOM05D003846 ORTHO05D004726 1.3e-58 229.9 159 74.8
Phvul.004G160300 Phaseolus vulgaris HOM05D003846 ORTHO05D004726 2.2e-58 229.2 159 75.5
Psat2g088560 Pisum sativum HOM05D003846 ORTHO05D004726 2.2e-58 229.2 138 79.7
RcHm_v2.0_Chr7g0184811 Rosa chinensis HOM05D003846 ORTHO05D004726 2.2e-58 229.2 157 73.2
TPR.G38292 Trifolium pratense HOM05D003846 ORTHO05D004726 2.2e-58 229.2 138 80.4
MSTRG.9269 Avicennia marina HOM05D003846 ORTHO05D004726 2.9e-58 228.8 160 75.6
unitig_21.g20429 Utricularia gibba HOM05D003846 ORTHO05D004726 2.9e-58 228.8 165 73.3
unitig_744.g24407 Utricularia gibba HOM05D003846 ORTHO05D004726 3.8e-58 228.4 166 71.7
Sed0022338 Sechium edule HOM05D003846 ORTHO05D004726 5.0e-58 228.0 160 74.4
VMungo0464G1055 Vigna mungo HOM05D003846 ORTHO05D004726 5.0e-58 228.0 159 73.6
FvH4_5g12540 Fragaria vesca HOM05D003846 ORTHO05D004726 6.5e-58 227.6 157 72.0
FAN04G0089 Fragaria x ananassa HOM05D003846 ORTHO05D004726 6.5e-58 227.6 157 72.0
FAN18G2095 Fragaria x ananassa HOM05D003846 ORTHO05D004726 6.5e-58 227.6 157 72.0
FAN18G2723 Fragaria x ananassa HOM05D003846 ORTHO05D004726 6.5e-58 227.6 157 72.0
FAN08G1200 Fragaria x ananassa HOM05D003846 ORTHO05D004726 8.5e-58 227.3 157 71.3
Lalb_Chr14g0371301 Lupinus albus HOM05D003846 ORTHO05D004726 8.5e-58 227.3 160 72.5
Lj2g0006290 Lotus japonicus HOM05D003846 ORTHO05D004726 1.5e-57 226.5 160 73.1
FAN13G1296 Fragaria x ananassa HOM05D003846 ORTHO05D004726 2.5e-57 225.7 157 71.3
arahy.Tifrunner.gnm1.ann1.5K2M2S Arachis hypogaea HOM05D003846 ORTHO05D004726 3.2e-57 225.3 160 71.9
arahy.Tifrunner.gnm1.ann1.5U1FHR Arachis hypogaea HOM05D003846 ORTHO05D004726 3.2e-57 225.3 160 71.9
SEGI_01063 Sequoiadendron giganteum HOM05D003846 ORTHO05D004726 5.5e-57 224.6 159 69.2
Manes.14G098800 Manihot esculenta HOM05D003846 ORTHO05D004726 3.6e-56 221.9 121 91.7
SalBow1G4777 Salvia bowleyana HOM05D003846 ORTHO05D004726 3.0e-55 218.8 138 81.2
BcaC03g14976 Brassica carinata HOM05D003846 ORTHO05D004726 5.2e-55 218.0 138 79.0
BcaC08g45948 Brassica carinata HOM05D003846 ORTHO05D004726 5.2e-55 218.0 145 76.6
GSVIVG01011936001 Vitis vinifera HOM05D003846 ORTHO05D004726 5.2e-55 218.0 158 70.9
ECA246G4193 Erigeron canadensis HOM05D003846 ORTHO05D004726 6.7e-55 217.6 160 71.9
BcaB03g15443 Brassica carinata HOM05D003846 ORTHO05D004726 1.1e-54 216.9 140 78.6
Lsat_1_v5_gn_3_40660 Lactuca sativa HOM05D003846 ORTHO05D004726 1.1e-54 216.9 160 72.5
Medtr6g085050 Medicago truncatula HOM05D003846 ORTHO05D004726 3.3e-54 215.3 150 75.3
Oeu024319.1 Olea europaea HOM05D003846 ORTHO05D004726 3.3e-54 215.3 129 82.2
HanXRQChr06g0171111 Helianthus annuus HOM05D003846 ORTHO05D004726 5.7e-54 214.5 162 70.4
Zm00001eb041630 Zea mays HOM05D003846 ORTHO05D004726 5.7e-54 214.5 164 68.9
C02p25100 Brassica napus HOM05D003846 ORTHO05D004726 7.5e-54 214.2 137 78.1
vmacro16453 Vaccinium macrocarpon HOM05D003846 ORTHO05D004726 1.7e-53 213.0 213 55.9
Thecc.02G359500 Theobroma cacao HOM05D003846 ORTHO05D004726 3.7e-53 211.8 121 86.0
Os08g0432500 Oryza sativa ssp. japonica HOM05D003846 ORTHO05D004726 6.3e-53 211.1 164 67.7
Psat1g039320 Pisum sativum HOM05D003846 ORTHO05D004726 8.2e-53 210.7 151 73.5
Lj9A429T51 Lonicera japonica HOM05D003846 ORTHO05D004726 1.4e-52 209.9 154 72.7
Sabra10G0097700 Salix brachista HOM05D003846 ORTHO05D004726 1.8e-52 209.5 121 83.5
CSS0028088 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 7.0e-52 207.6 121 84.3
Potri.008G117800 Populus trichocarpa HOM05D003846 ORTHO05D004726 9.1e-52 207.2 121 84.3
TPR.G9001 Trifolium pratense HOM05D003846 ORTHO05D004726 4.5e-51 204.9 146 74.0
Aa31LG6G7320 Aethionema arabicum HOM05D003846 ORTHO05D004726 7.7e-51 204.1 128 77.3
Zm00001eb179570 Zea mays HOM05D003846 ORTHO05D004726 1.3e-50 203.4 164 65.9
Actinidia39818 Actinidia chinensis HOM05D003846 ORTHO05D004726 1.7e-50 203.0 135 75.6
AagrBONN_evm.TU.Sc2ySwM_369.545 Anthoceros agrestis HOM05D003846 ORTHO05D004726 6.5e-50 201.1 118 83.9
Migut.D01214 Erythranthe guttata HOM05D003846 ORTHO05D004726 8.0e-48 194.1 117 84.6
SGA_v2.0_scaffold63G21786 Striga asiatica HOM05D003846 ORTHO05D004726 8.0e-48 194.1 120 80.8
Rhsim12G0144000 Rhododendron simsii HOM05D003846 ORTHO05D004726 1.0e-47 193.7 137 73.7
Mapoly0068s0048 Marchantia polymorpha HOM05D003846 ORTHO05D004726 4.0e-47 191.8 119 79.0
SMO356G0199 Selaginella moellendorffii HOM05D003846 ORTHO05D004726 9.8e-46 187.2 109 84.4
Pp3c10_21560 Physcomitrium patens HOM05D003846 ORTHO05D004726 1.8e-44 183.0 114 78.1
Lj6A764T53 Lonicera japonica HOM05D003846 ORTHO05D004726 2.4e-44 182.6 134 67.2
Pp3c20_21920 Physcomitrium patens HOM05D003846 ORTHO05D004726 5.9e-43 177.9 111 76.6
Sed0007398 Sechium edule HOM05D003846 ORTHO05D004726 6.8e-39 164.5 89 87.6
DCAR_011545 Daucus carota HOM05D003846 ORTHO05D004726 1.1e-36 157.1 82 89.0
CBR_g40856 Chara braunii HOM05D003846 ORTHO05D004726 1.6e-35 153.3 122 64.8
HPP92_027194 Vanilla planifolia HOM05D003846 ORTHO05D004726 1.5e-33 146.7 142 56.3
PRCOL_00003868 Prasinoderma coloniale HOM05D003846 ORTHO05D004726 2.2e-29 132.9 119 58.8
CDE05G0888 Ceratophyllum demersum HOM05D003846 ORTHO05D004726 5.6e-25 118.2 141 47.5
Manes.11G040441 Manihot esculenta HOM05D000085 ORTHO05D249439 7.3e-25 117.9 95 58.9
Lsat_1_v5_gn_4_145001 Lactuca sativa HOM05D003846 ORTHO05D004726 3.6e-24 115.5 79 73.4
Manes.11G039928 Manihot esculenta HOM05D000085 ORTHO05D250131 1.2e-22 110.5 86 60.5
Manes.11G040408 Manihot esculenta HOM05D003846 ORTHO05D004726 2.6e-22 109.4 88 59.1
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 4.4e-22 108.6 98 62.2
Cre17.g696400 Chlamydomonas reinhardtii HOM05D003846 ORTHO05D004726 1.3e-21 107.1 111 50.5
Nn4g23759 Nelumbo nucifera HOM05D003846 ORTHO05D004726 1.4e-20 103.6 72 70.8
Lsat_1_v5_gn_4_123441 Lactuca sativa HOM05D003846 ORTHO05D004726 4.1e-20 102.1 86 64.0
Lsat_1_v5_gn_5_125381 Lactuca sativa HOM05D003846 ORTHO05D020826 4.1e-20 102.1 86 64.0
Lsat_1_v5_gn_5_18841 Lactuca sativa HOM05D003846 ORTHO05D020826 5.4e-20 101.7 82 65.9
Lsat_1_v5_gn_5_43841 Lactuca sativa HOM05D003846 ORTHO05D020826 5.4e-20 101.7 82 65.9
TPR.G20310 Trifolium pratense HOM05D003846 ORTHO05D004726 5.4e-20 101.7 54 90.7
Lsat_1_v5_gn_7_114520 Lactuca sativa HOM05D003846 ORTHO05D004726 6.0e-19 98.2 85 63.5
Lsat_1_v5_gn_4_70420 Lactuca sativa HOM05D003297 ORTHO05D020826 3.0e-18 95.9 65 72.3
CsaV3_5G034070 Cucumis sativus L. HOM05D000040 ORTHO05D000759 1.9e-17 93.2 78 60.3
Lj6A762T41 Lonicera japonica HOM05D003846 ORTHO05D004726 8.1e-16 87.8 55 76.4
Aa31sc562G10 Aethionema arabicum HOM05D003846 ORTHO05D004726 2.2e-13 79.7 128 37.5
FAN12G0550 Fragaria x ananassa HOM05D003846 ORTHO05D004726 3.9e-10 68.9 63 65.1
C06p41190 Brassica napus HOM05D003846 ORTHO05D004726 4.7e-08 62.0 40 72.5


User provided reference genes

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