Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr11.1320 Acer truncatum HOM05D006509 ORTHO05D008144 6.0e-180 634.0 314 100.0
Atru.chr11.1232 Acer truncatum HOM05D006509 ORTHO05D008144 1.0e-179 633.3 314 99.7
Ciclev10032158m.g Citrus clementina HOM05D006509 ORTHO05D008144 3.5e-119 432.2 318 71.4
Thecc.01G136400 Theobroma cacao HOM05D006509 ORTHO05D008144 1.0e-107 394.0 324 64.8
Gorai.010G244900 Gossypium raimondii HOM05D006509 ORTHO05D008144 2.6e-106 389.4 333 62.8
Gohir.D13G187200 Gossypium hirsutum HOM05D006509 ORTHO05D008144 9.8e-106 387.5 335 62.4
THA.LOC104800032 Tarenaya hassleriana HOM05D006509 ORTHO05D008144 2.8e-105 386.0 314 64.6
Duzib264G0706 Durio zibethinus HOM05D006509 ORTHO05D008144 1.8e-104 383.3 323 62.5
Manes.09G055500 Manihot esculenta HOM05D006509 ORTHO05D008144 2.4e-104 382.9 322 61.5
Nn1g04452 Nelumbo nucifera HOM05D006509 ORTHO05D008144 2.7e-103 379.4 317 60.9
TAR629G0624 Trochodendron aralioides HOM05D006509 ORTHO05D008144 1.0e-102 377.5 241 74.7
BcaC05g28409 Brassica carinata HOM05D006509 ORTHO05D008144 1.1e-101 374.0 240 72.5
C05p44930 Brassica napus HOM05D006509 ORTHO05D008144 1.5e-101 373.6 240 72.1
BolC5t33216H Brassica oleracea HOM05D006509 ORTHO05D008144 1.5e-101 373.6 240 72.1
Haze_11724 Corylus avellana HOM05D006509 ORTHO05D008144 3.3e-101 372.5 281 68.7
GSVIVG01010764001 Vitis vinifera HOM05D006509 ORTHO05D008144 9.5e-101 370.9 308 62.0
Cfa008714 Carpinus fangiana HOM05D006509 ORTHO05D008144 2.1e-100 369.8 329 61.7
A05p29310 Brassica napus HOM05D006509 ORTHO05D008144 3.6e-100 369.0 327 58.1
Gohir.A09G005300 Gossypium hirsutum HOM05D006509 ORTHO05D008144 1.0e-99 367.5 323 60.1
THA.LOC104814131 Tarenaya hassleriana HOM05D006509 ORTHO05D008144 1.0e-99 367.5 297 64.0
Eucgr.G02566 Eucalyptus grandis HOM05D006509 ORTHO05D008144 2.3e-99 366.3 323 58.8
BraA05t21822Z Brassica rapa HOM05D006509 ORTHO05D008144 4.0e-99 365.5 240 70.0
TWI74G1084 Tripterygium wilfordii HOM05D006509 ORTHO05D008144 1.2e-98 364.0 325 60.3
Gohir.A13G179100 Gossypium hirsutum HOM05D006509 ORTHO05D008144 1.5e-98 363.6 228 76.8
CANSAT56G2102 Cannabis sativa HOM05D006509 ORTHO05D008144 2.0e-98 363.2 313 59.7
Gohir.D09G004600 Gossypium hirsutum HOM05D006509 ORTHO05D008144 2.0e-98 363.2 325 60.3
Thhalv10021111m.g Eutrema salsugineum HOM05D006509 ORTHO05D008144 2.6e-98 362.8 245 69.0
Sp3g17820 Schrenkiella parvula HOM05D006509 ORTHO05D008144 5.7e-98 361.7 245 68.6
BcaB06g26050 Brassica carinata HOM05D006509 ORTHO05D008144 1.7e-97 360.1 241 69.7
Carub.0003s1969 Capsella rubella HOM05D006509 ORTHO05D008144 1.7e-97 360.1 324 57.4
Gorai.006G006200 Gossypium raimondii HOM05D006509 ORTHO05D008144 2.9e-97 359.4 325 59.4
CiPaw.05G167100 Carya illinoinensis HOM05D006509 ORTHO05D008144 6.4e-97 358.2 254 68.9
PSO017G6086 Papaver somniferum HOM05D006509 ORTHO05D008144 2.4e-96 356.3 284 64.8
CARHR095320 Cardamine hirsuta HOM05D006509 ORTHO05D008144 4.1e-96 355.5 246 67.1
DCAR_030403 Daucus carota HOM05D006509 ORTHO05D008144 1.2e-95 354.0 281 61.2
Hma1.2p1_1005F.1_g246910 Hydrangea macrophylla HOM05D006509 ORTHO05D008144 2.0e-95 353.2 269 66.9
EL10Ac9g22921 Beta vulgaris HOM05D006509 ORTHO05D008144 5.9e-95 351.7 331 57.1
QL03p043626 Quercus lobata HOM05D006509 ORTHO05D008144 1.0e-94 350.9 249 70.3
AL3G33260 Arabidopsis lyrata HOM05D006509 ORTHO05D008144 1.7e-94 350.1 245 66.9
Peaxi162Scf00818g00020 Petunia axillaris HOM05D006509 ORTHO05D008144 1.7e-94 350.1 240 69.2
Nitab4.5_0002192g0100 Nicotiana tabacum HOM05D006509 ORTHO05D008144 2.3e-94 349.7 240 70.0
arahy.Tifrunner.gnm1.ann1.LJ2JSE Arachis hypogaea HOM05D006509 ORTHO05D008144 3.0e-94 349.4 244 68.0
Phvul.002G240600 Phaseolus vulgaris HOM05D006509 ORTHO05D008144 3.0e-94 349.4 240 68.8
Aa31LG8G6580 Aethionema arabicum HOM05D006509 ORTHO05D008144 3.9e-94 349.0 241 68.0
RcHm_v2.0_Chr1g0363071 Rosa chinensis HOM05D006509 ORTHO05D008144 6.6e-94 348.2 327 56.9
Lj4g0012507 Lotus japonicus HOM05D006509 ORTHO05D008144 1.1e-93 347.4 238 71.4
Sc06g0007860 Simmondsia chinensis HOM05D006509 ORTHO05D008144 1.1e-93 347.4 241 68.9
VMungo0251G2215 Vigna mungo HOM05D006509 ORTHO05D008144 1.1e-93 347.4 240 67.1
AT3G19810 Arabidopsis thaliana HOM05D006509 ORTHO05D008144 1.5e-93 347.1 244 67.2
CSS0015169 Camellia sinensis var. sinensis HOM05D006509 ORTHO05D008144 1.5e-93 347.1 327 56.6
PSO478G1783 Papaver somniferum HOM05D006509 ORTHO05D008144 1.9e-93 346.7 282 62.4
Hund08535 Selenicereus undatus HOM05D006509 ORTHO05D008144 1.9e-93 346.7 272 62.1
Glyma.05G160301 Glycine max HOM05D006509 ORTHO05D008144 2.5e-93 346.3 240 67.5
arahy.Tifrunner.gnm1.ann1.4V51TJ Arachis hypogaea HOM05D006509 ORTHO05D008144 4.3e-93 345.5 247 67.6
arahy.Tifrunner.gnm1.ann1.IV5K9E Arachis hypogaea HOM05D006509 ORTHO05D008144 9.5e-93 344.4 247 67.2
arahy.Tifrunner.gnm1.ann1.6728UU Arachis hypogaea HOM05D006509 ORTHO05D008144 1.2e-92 344.0 245 67.8
FvH4_7g19250 Fragaria vesca HOM05D006509 ORTHO05D008144 2.8e-92 342.8 309 58.3
FAN06G0528 Fragaria x ananassa HOM05D006509 ORTHO05D008144 2.8e-92 342.8 309 58.3
Potri.010G170100 Populus trichocarpa HOM05D006509 ORTHO05D008144 4.7e-92 342.0 309 59.5
FAN01G2825 Fragaria x ananassa HOM05D006509 ORTHO05D008144 6.2e-92 341.7 309 58.3
Sabra10G0129900 Salix brachista HOM05D006509 ORTHO05D008144 6.2e-92 341.7 316 59.5
FAN03G0898 Fragaria x ananassa HOM05D006509 ORTHO05D008144 1.4e-91 340.5 309 57.9
PGR004G1007 Punica granatum HOM05D006509 ORTHO05D008144 3.1e-91 339.3 244 66.4
HanXRQChr06g0171951 Helianthus annuus HOM05D006509 ORTHO05D008144 1.2e-90 337.4 237 68.4
MD01G1107600 Malus domestica HOM05D006509 ORTHO05D008144 1.2e-90 337.4 252 66.3
Lsat_1_v5_gn_3_32880 Lactuca sativa HOM05D006509 ORTHO05D008144 1.5e-90 337.0 329 55.3
Medtr8g086630 Medicago truncatula HOM05D006509 ORTHO05D008144 1.5e-90 337.0 242 67.8
PGSC0003DMG400019835 Solanum tuberosum HOM05D006509 ORTHO05D008144 1.5e-90 337.0 239 66.1
CDE04G0697 Ceratophyllum demersum HOM05D006509 ORTHO05D008144 2.0e-90 336.7 259 62.5
Ca_17903_v3 Cicer arietinum L. HOM05D006509 ORTHO05D008144 2.6e-90 336.3 241 68.0
Prupe.2G212300 Prunus persica HOM05D006509 ORTHO05D008144 5.8e-90 335.1 283 60.1
CAN.G157.10 Capsicum annuum HOM05D006509 ORTHO05D008144 7.5e-90 334.7 240 66.2
ClCG09G005710 Citrullus lanatus HOM05D006509 ORTHO05D008144 2.9e-89 332.8 265 62.3
Sed0013319 Sechium edule HOM05D006509 ORTHO05D008144 2.9e-89 332.8 256 61.3
CDE07G1911 Ceratophyllum demersum HOM05D006509 ORTHO05D008144 6.4e-89 331.6 236 67.4
Actinidia04136 Actinidia chinensis HOM05D006509 ORTHO05D008144 4.1e-88 328.9 323 54.8
TPR.G6737 Trifolium pratense HOM05D006509 ORTHO05D008144 4.1e-88 328.9 237 65.0
Lalb_Chr13g0295231 Lupinus albus HOM05D006509 ORTHO05D008144 1.2e-87 327.4 303 57.1
CsaV3_7G029430 Cucumis sativus L. HOM05D006509 ORTHO05D008144 6.0e-87 325.1 256 62.1
Solyc02g021050.3 Solanum lycopersicum HOM05D006509 ORTHO05D008144 3.0e-86 322.8 239 63.6
Sopen02g005330 Solanum pennellii HOM05D006509 ORTHO05D008144 6.6e-86 321.6 239 63.2
Aqoxy4G00161 Aquilegia oxysepala HOM05D006509 ORTHO05D008144 5.6e-85 318.5 246 62.2
FAN10G2131 Fragaria x ananassa HOM05D006509 ORTHO05D008144 1.2e-84 317.4 287 58.5
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 2.1e-84 316.6 205 75.1
Migut.I00780 Erythranthe guttata HOM05D006509 ORTHO05D008144 2.3e-83 313.2 289 53.3
vmacro14294 Vaccinium macrocarpon HOM05D006509 ORTHO05D008144 2.3e-83 313.2 327 52.3
vmacro23064 Vaccinium macrocarpon HOM05D006509 ORTHO05D008144 2.3e-83 313.2 327 52.3
MSTRG.22733 Avicennia marina HOM05D006509 ORTHO05D008144 3.1e-83 312.8 291 54.6
SGA_v2.0_scaffold5G02679 Striga asiatica HOM05D006509 ORTHO05D008144 5.2e-83 312.0 256 59.4
AUR62017665 Chenopodium quinoa HOM05D006509 ORTHO05D008144 4.4e-82 308.9 237 65.0
MBI06_g12322_MAGBIO Magnolia biondii HOM05D006509 ORTHO05D008144 4.4e-82 308.9 217 67.7
SalBow2G3295 Salvia bowleyana HOM05D006509 ORTHO05D008144 4.9e-81 305.4 229 62.0
ATR0618G169 Amborella trichopoda HOM05D006509 ORTHO05D008144 1.7e-78 297.0 248 58.5
Rhsim01G0196900 Rhododendron simsii HOM05D006509 ORTHO05D008144 2.3e-78 296.6 381 45.1
Psat7g069200 Pisum sativum HOM05D006509 ORTHO05D008144 1.2e-76 290.8 254 55.9
Lj6C721T21 Lonicera japonica HOM05D006509 ORTHO05D008144 1.8e-75 287.0 323 49.2
Migut.I00779 Erythranthe guttata HOM05D006509 ORTHO05D008144 8.4e-73 278.1 243 56.0
MELO3C015985.2 Cucumis melo HOM05D006509 ORTHO05D008144 1.1e-72 277.7 220 62.7
Os02g0831200 Oryza sativa ssp. japonica HOM05D006509 ORTHO05D008144 3.6e-68 262.7 234 51.7
FAN10G3587 Fragaria x ananassa HOM05D006509 ORTHO05D007808 1.5e-58 230.7 164 67.1
Medtr4g086490 Medicago truncatula HOM05D000001 ORTHO05D000003 2.0e-58 230.3 203 60.1
COL.COLO4_35800 Corchorus olitorius HOM05D006509 ORTHO05D008144 2.9e-57 226.5 143 77.6
Zm00001eb259480 Zea mays HOM05D006509 ORTHO05D008144 8.4e-57 224.9 219 53.0
AUR62015202 Chenopodium quinoa HOM05D006509 ORTHO05D008144 1.2e-55 221.1 158 69.0
SEGI_30002 Sequoiadendron giganteum HOM05D006509 ORTHO05D008144 4.8e-52 209.1 241 48.5
SEGI_16170 Sequoiadendron giganteum HOM05D006509 ORTHO05D008144 2.4e-51 206.8 238 50.4
AUR62014968 Chenopodium quinoa HOM05D006509 ORTHO05D008144 5.8e-50 202.2 136 70.6
unitig_747.g21717 Utricularia gibba HOM05D006509 ORTHO05D008144 7.1e-48 195.3 155 58.7
Mapoly0002s0264 Marchantia polymorpha HOM05D006509 ORTHO05D008144 2.1e-47 193.7 237 43.5
CBR_g57847 Chara braunii HOM05D006509 ORTHO05D008144 3.0e-46 189.9 240 40.8
Pp3c4_29820 Physcomitrium patens HOM05D006509 ORTHO05D008144 3.0e-46 189.9 250 42.8
Dinv39609 Davidia involucrata HOM05D006509 ORTHO05D008144 6.7e-46 188.7 138 64.5
Cpa.g.sc63.3 Carica papaya HOM05D006509 ORTHO05D008144 7.4e-45 185.3 181 57.5
FAN10G0955 Fragaria x ananassa HOM05D006509 ORTHO05D008144 3.7e-44 183.0 148 64.2
Cc03_g14920 Coffea canephora HOM05D006509 ORTHO05D008144 4.0e-43 179.5 138 63.0
ECA246G0117 Erigeron canadensis HOM05D006509 ORTHO05D008144 3.4e-42 176.4 102 80.4
Glyma.08G117902 Glycine max HOM05D006509 ORTHO05D008144 6.5e-41 172.2 131 60.3
Os04g0108300 Oryza sativa ssp. japonica HOM05D006509 ORTHO05D008144 2.1e-36 157.1 138 49.3
AUR62018171 Chenopodium quinoa HOM05D006509 ORTHO05D008144 2.8e-36 156.8 101 75.2
Cc00_g35200 Coffea canephora HOM05D006509 ORTHO05D008144 3.2e-32 143.3 127 55.1
Oeu049185.1 Olea europaea HOM05D006509 ORTHO05D008144 1.3e-30 137.9 108 61.1
AagrBONN_evm.TU.Sc2ySwM_362.2130 Anthoceros agrestis HOM05D006509 ORTHO05D008144 1.6e-23 114.4 180 39.4
FAN01G0805 Fragaria x ananassa HOM05D006509 ORTHO05D008144 1.1e-19 101.7 64 76.6
Ca_19971_v3 Cicer arietinum L. HOM05D000020 ORTHO05D000156 1.5e-13 81.3 75 58.7
Oeu033605.1 Olea europaea HOM05D006509 ORTHO05D008144 3.7e-12 76.6 75 49.3


User provided reference genes

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