Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 0.0e+00 1173.3 568 100.0
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 0.0e+00 1173.3 568 100.0
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 1.6e-311 1072.0 568 90.0
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 3.5e-311 1070.8 568 90.0
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 3.2e-309 1064.3 568 89.1
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 1.8e-307 1058.5 568 88.6
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 6.8e-307 1056.6 568 88.7
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 1.5e-306 1055.4 561 89.5
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 3.4e-306 1054.3 568 88.4
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 1.3e-305 1052.4 563 88.5
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 1.8e-304 1048.5 561 88.8
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 1.8e-304 1048.5 568 87.7
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 2.4e-304 1048.1 568 87.7
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 5.9e-303 1043.5 568 87.5
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 5.9e-303 1043.5 564 87.2
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 5.9e-303 1043.5 561 88.2
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 8.6e-302 1039.6 568 87.0
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 1.5e-301 1038.9 568 86.3
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 1.9e-301 1038.5 568 86.6
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 1.9e-301 1038.5 568 87.3
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 1.9e-301 1038.5 567 87.1
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 2.5e-301 1038.1 565 86.9
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 4.3e-301 1037.3 565 86.5
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 3.6e-300 1034.2 567 86.9
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 6.1e-300 1033.5 571 86.7
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 1.4e-299 1032.3 567 86.2
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 2.3e-299 1031.6 568 85.9
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 3.0e-299 1031.2 567 86.1
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 6.8e-299 1030.0 561 87.5
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 6.8e-299 1030.0 563 87.0
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 8.9e-299 1029.6 568 85.6
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 1.2e-298 1029.2 563 86.7
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 1.5e-298 1028.9 568 86.8
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 2.6e-298 1028.1 567 85.5
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 4.4e-298 1027.3 563 86.5
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 9.8e-298 1026.2 568 86.3
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 9.8e-298 1026.2 568 85.6
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 1.3e-297 1025.8 563 86.1
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 1.3e-297 1025.8 568 86.4
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 1.7e-297 1025.4 563 86.9
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 1.7e-297 1025.4 568 85.4
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 6.4e-297 1023.5 568 85.9
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 8.3e-297 1023.1 568 85.9
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 8.3e-297 1023.1 567 85.7
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 1.8e-296 1021.9 563 86.5
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 3.2e-296 1021.1 568 85.6
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 4.1e-296 1020.8 563 86.5
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 1.6e-295 1018.8 561 86.8
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 2.0e-295 1018.5 568 85.6
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 2.7e-295 1018.1 568 85.7
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 7.8e-295 1016.5 556 86.7
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 1.3e-294 1015.8 563 85.4
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 1.3e-294 1015.8 563 85.4
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 2.3e-294 1015.0 568 85.6
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 6.6e-294 1013.4 568 84.5
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 1.1e-293 1012.7 568 85.2
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 3.3e-293 1011.1 563 85.4
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 4.3e-293 1010.7 563 85.3
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 5.6e-293 1010.4 561 84.8
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 5.6e-293 1010.4 563 85.3
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 7.3e-293 1010.0 564 85.1
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 9.5e-293 1009.6 568 84.0
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 9.5e-293 1009.6 550 86.2
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 1.6e-292 1008.8 561 85.4
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 2.1e-292 1008.4 565 83.4
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 2.1e-292 1008.4 565 84.2
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 3.4e-290 1001.1 565 82.7
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 5.8e-290 1000.3 556 84.9
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 1.7e-289 998.8 568 83.1
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 3.7e-289 997.7 550 85.6
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 8.3e-289 996.5 566 84.8
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 3.5e-287 991.1 549 85.2
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 4.6e-287 990.7 552 85.0
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 7.8e-287 989.9 565 84.4
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 1.7e-286 988.8 557 85.6
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 2.3e-286 988.4 556 85.3
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 3.9e-286 987.6 549 85.1
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 3.9e-286 987.6 569 81.4
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 3.3e-285 984.6 564 82.8
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 5.6e-285 983.8 571 81.8
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 7.3e-285 983.4 564 82.6
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 7.3e-285 983.4 564 82.6
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 7.3e-285 983.4 564 82.6
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 7.3e-285 983.4 551 85.3
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 7.3e-285 983.4 564 82.3
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 1.2e-284 982.6 568 82.2
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 2.1e-284 981.9 564 82.4
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 2.1e-284 981.9 568 81.2
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 3.6e-284 981.1 564 82.4
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 4.7e-284 980.7 564 82.1
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 4.7e-284 980.7 564 82.3
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 4.7e-284 980.7 564 81.9
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 8.1e-284 979.9 564 83.3
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 1.4e-283 979.2 564 81.6
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 2.3e-283 978.4 564 81.9
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 2.3e-283 978.4 564 81.7
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 6.8e-283 976.9 564 81.6
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 6.8e-283 976.9 564 81.6
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 6.8e-283 976.9 562 83.8
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 6.8e-283 976.9 562 84.2
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 1.5e-282 975.7 564 81.7
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 1.5e-282 975.7 564 81.6
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 2.6e-282 974.9 565 83.5
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 4.4e-282 974.2 564 81.0
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 2.2e-281 971.8 564 81.7
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 4.9e-281 970.7 564 81.7
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 4.9e-281 970.7 564 81.6
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 2.4e-280 968.4 565 81.4
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 3.2e-280 968.0 534 86.1
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 5.4e-280 967.2 568 81.5
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 2.1e-279 965.3 564 80.5
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 2.7e-279 964.9 570 81.1
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 4.6e-279 964.1 562 81.1
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 3.0e-278 961.4 564 80.1
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 5.1e-278 960.7 567 81.0
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 6.6e-278 960.3 568 79.6
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 8.6e-278 959.9 564 80.9
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 1.5e-277 959.1 564 80.5
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 3.3e-277 958.0 568 79.0
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 9.5e-277 956.4 564 80.1
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 1.2e-271 939.5 559 79.2
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 2.1e-271 938.7 571 77.8
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 6.0e-271 937.2 571 77.4
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 8.7e-270 933.3 570 77.9
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 4.9e-265 917.5 568 75.4
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 2.4e-264 915.2 563 79.6
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 3.0e-262 908.3 567 75.8
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 3.9e-262 907.9 564 77.5
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 5.6e-261 904.0 524 81.5
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 3.4e-258 894.8 565 73.6
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 1.1e-256 889.8 574 74.2
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 1.3e-254 882.9 565 73.8
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 9.6e-253 876.7 569 73.5
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 3.1e-251 871.7 568 73.2
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 4.5e-250 867.8 566 73.1
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 9.9e-250 866.7 562 74.7
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 6.2e-244 847.4 556 75.9
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 2.1e-239 832.4 564 70.2
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 9.7e-237 823.5 469 82.3
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 7.9e-223 777.3 418 88.5
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.8e-211 739.6 425 81.9
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 1.5e-205 719.9 563 64.5
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 4.2e-200 701.8 567 63.0
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 4.4e-189 665.2 373 82.0
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 3.4e-181 639.0 541 56.2
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 1.2e-170 604.0 417 72.7
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 4.6e-170 602.1 329 84.5
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 4.7e-167 592.0 523 53.3
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 5.2e-166 588.6 488 55.3
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 7.3e-152 541.6 292 83.9
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 7.3e-152 541.6 418 60.0
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.8e-137 493.8 567 49.4
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 3.7e-135 486.1 568 49.1
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 7.1e-131 471.9 304 72.4
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 1.8e-129 467.2 468 56.2
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 2.8e-87 327.0 549 38.3
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 7.7e-85 318.9 213 71.8
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 3.7e-79 300.1 493 34.9
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 7.3e-67 259.2 197 62.9
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 5.2e-65 253.1 197 61.9
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 7.0e-62 242.7 166 68.1
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 2.8e-50 204.1 130 76.9
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 6.8e-49 199.5 133 75.9
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 2.2e-47 194.5 128 77.3
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 3.0e-44 184.1 128 68.8
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 2.5e-43 181.0 166 59.0
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 9.6e-43 179.1 166 59.0
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 1.6e-42 178.3 166 59.0
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 1.8e-41 174.9 166 58.4
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 6.8e-41 172.9 319 33.2
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 4.8e-34 150.2 87 79.3
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 5.3e-33 146.7 493 26.6
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 5.1e-28 130.2 95 65.3
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 6.6e-28 129.8 76 73.7
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 9.6e-27 125.9 213 38.5
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 9.6e-27 125.9 85 63.5
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 2.7e-21 107.8 184 39.7
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 1.3e-20 105.5 166 42.2
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 1.5e-16 92.0 103 43.7
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 4.3e-11 73.9 46 67.4
Duzib187G1275 Durio zibethinus HOM05D000597 ORTHO05D006307 1.4e-06 58.9 143 23.8
Cc08_g01180 Coffea canephora HOM05D000597 ORTHO05D006307 3.2e-06 57.8 221 23.5


User provided reference genes

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