Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr11.1034 Acer truncatum HOM05D005547 ORTHO05D006887 4.2e-53 211.1 104 100.0
Ciclev10017277m.g Citrus clementina HOM05D005547 ORTHO05D006887 2.2e-46 188.7 103 91.3
Manes.17G091700 Manihot esculenta HOM05D005547 ORTHO05D006887 2.7e-44 181.8 102 86.3
MD13G1013300 Malus domestica HOM05D005547 ORTHO05D006887 3.5e-44 181.4 102 86.3
Prupe.1G340400 Prunus persica HOM05D005547 ORTHO05D006887 4.6e-44 181.0 102 85.3
Duzib251G0939 Durio zibethinus HOM05D005547 ORTHO05D006887 6.0e-44 180.6 102 87.3
Manes.15G140700 Manihot esculenta HOM05D005547 ORTHO05D006887 6.0e-44 180.6 102 86.3
Thecc.02G300400 Theobroma cacao HOM05D005547 ORTHO05D006887 6.0e-44 180.6 102 87.3
Gohir.D02G138400 Gossypium hirsutum HOM05D005547 ORTHO05D006887 7.9e-44 180.3 102 88.2
CiPaw.06G057000 Carya illinoinensis HOM05D005547 ORTHO05D006887 1.7e-43 179.1 104 85.6
Gohir.A03G114100 Gossypium hirsutum HOM05D005547 ORTHO05D006887 1.7e-43 179.1 102 87.3
Haze_11478 Corylus avellana HOM05D005547 ORTHO05D006887 2.3e-43 178.7 104 86.5
MD16G1010200 Malus domestica HOM05D005547 ORTHO05D006887 2.3e-43 178.7 102 84.3
Duzib268G1003 Durio zibethinus HOM05D005547 ORTHO05D006887 3.0e-43 178.3 102 86.3
Gorai.005G154900 Gossypium raimondii HOM05D005547 ORTHO05D006887 3.9e-43 177.9 102 87.3
Gorai.005G155000 Gossypium raimondii HOM05D005547 ORTHO05D006887 3.9e-43 177.9 102 87.3
Cfa015074 Carpinus fangiana HOM05D005547 ORTHO05D006887 5.1e-43 177.6 104 86.5
Oeu024849.1 Olea europaea HOM05D005547 ORTHO05D006887 5.1e-43 177.6 102 85.3
Gohir.D02G138500 Gossypium hirsutum HOM05D005547 ORTHO05D006887 8.7e-43 176.8 102 86.3
CANSAT78G0133 Cannabis sativa HOM05D005547 ORTHO05D006887 2.5e-42 175.3 102 85.3
Potri.010G099900 Populus trichocarpa HOM05D005547 ORTHO05D006887 4.3e-42 174.5 102 85.3
Sabra10G0072400 Salix brachista HOM05D005547 ORTHO05D006887 5.6e-42 174.1 102 86.3
Lalb_Chr21g0306901 Lupinus albus HOM05D005547 ORTHO05D006887 7.3e-42 173.7 102 81.4
Cpa.g.sc2.79 Carica papaya HOM05D005547 ORTHO05D006887 1.3e-41 172.9 102 84.3
Ca_11205_v3 Cicer arietinum L. HOM05D005547 ORTHO05D006887 1.3e-41 172.9 103 86.4
Potri.008G141900 Populus trichocarpa HOM05D005547 ORTHO05D006887 1.3e-41 172.9 102 85.3
MBI06_g29243_MAGBIO Magnolia biondii HOM05D005547 ORTHO05D006887 1.6e-41 172.6 102 84.3
TWI53G0286 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 2.1e-41 172.2 103 83.5
Sabra08G0107500 Salix brachista HOM05D005547 ORTHO05D006887 3.6e-41 171.4 102 84.3
ClCG11G000640 Citrullus lanatus HOM05D005547 ORTHO05D006887 4.8e-41 171.0 101 86.1
Medtr1g112480 Medicago truncatula HOM05D005547 ORTHO05D006887 6.2e-41 170.6 105 83.8
COL.COLO4_27546 Corchorus olitorius HOM05D005547 ORTHO05D006887 8.1e-41 170.2 102 84.3
Lalb_Chr02g0143381 Lupinus albus HOM05D005547 ORTHO05D006887 8.1e-41 170.2 102 81.4
SGA_v2.0_scaffold65G22157 Striga asiatica HOM05D005547 ORTHO05D006887 8.1e-41 170.2 103 83.5
Duzib248G0639 Durio zibethinus HOM05D005547 ORTHO05D006887 1.4e-40 169.5 102 81.4
BcaC06g34084 Brassica carinata HOM05D005547 ORTHO05D006887 1.8e-40 169.1 102 81.4
C07p32870 Brassica napus HOM05D005547 ORTHO05D006887 1.8e-40 169.1 102 81.4
BolC7t43802H Brassica oleracea HOM05D005547 ORTHO05D006887 1.8e-40 169.1 102 81.4
Gohir.A03G114000 Gossypium hirsutum HOM05D005547 ORTHO05D006887 2.4e-40 168.7 102 83.3
TAR295G0002 Trochodendron aralioides HOM05D005547 ORTHO05D006887 2.4e-40 168.7 101 80.2
TAR622G1295 Trochodendron aralioides HOM05D005547 ORTHO05D006887 2.4e-40 168.7 101 80.2
Migut.D01210 Erythranthe guttata HOM05D005547 ORTHO05D006887 3.1e-40 168.3 104 79.8
PSO063G0668 Papaver somniferum HOM05D005547 ORTHO05D006887 3.1e-40 168.3 101 81.2
TWI77G0905 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 3.1e-40 168.3 103 80.6
BcaC04g21537 Brassica carinata HOM05D005547 ORTHO05D006887 4.0e-40 167.9 102 81.4
A09p23740 Brassica napus HOM05D005547 ORTHO05D006887 4.0e-40 167.9 102 81.4
C09p30580 Brassica napus HOM05D005547 ORTHO05D006887 4.0e-40 167.9 102 81.4
BolC9t55922H Brassica oleracea HOM05D005547 ORTHO05D006887 4.0e-40 167.9 102 81.4
BraA09t37975Z Brassica rapa HOM05D005547 ORTHO05D006887 4.0e-40 167.9 102 81.4
Thhalv10005178m.g Eutrema salsugineum HOM05D005547 ORTHO05D006887 4.0e-40 167.9 102 81.4
QL03p040577 Quercus lobata HOM05D005547 ORTHO05D006887 4.0e-40 167.9 103 80.6
QL03p040948 Quercus lobata HOM05D005547 ORTHO05D006887 4.0e-40 167.9 103 80.6
Sp2g13460 Schrenkiella parvula HOM05D005547 ORTHO05D006887 4.0e-40 167.9 102 81.4
MSTRG.13653 Avicennia marina HOM05D005547 ORTHO05D006887 5.3e-40 167.5 101 83.2
BcaC06g31254 Brassica carinata HOM05D005547 ORTHO05D006887 5.3e-40 167.5 102 81.4
BcaC06g31255 Brassica carinata HOM05D005547 ORTHO05D006887 5.3e-40 167.5 102 81.4
A06p43870 Brassica napus HOM05D005547 ORTHO05D006887 6.9e-40 167.2 102 80.4
BraA06t27263Z Brassica rapa HOM05D005547 ORTHO05D006887 6.9e-40 167.2 102 80.4
Rhsim09G0081900 Rhododendron simsii HOM05D005547 ORTHO05D006887 6.9e-40 167.2 104 82.7
TWI77G0558 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 6.9e-40 167.2 103 79.6
Nitab4.5_0001091g0130 Nicotiana tabacum HOM05D005547 ORTHO05D006887 9.0e-40 166.8 104 79.8
Solyc04g008490.2 Solanum lycopersicum HOM05D005547 ORTHO05D006887 1.2e-39 166.4 102 79.4
Sopen04g003640 Solanum pennellii HOM05D005547 ORTHO05D006887 1.2e-39 166.4 102 79.4
MBI06_g19635_MAGBIO Magnolia biondii HOM05D005547 ORTHO05D006887 1.5e-39 166.0 98 83.7
PSO782G2712 Papaver somniferum HOM05D005547 ORTHO05D006887 1.5e-39 166.0 101 79.2
TPR.G2488 Trifolium pratense HOM05D005547 ORTHO05D006887 1.5e-39 166.0 106 81.1
Sc03g0005980 Simmondsia chinensis HOM05D005547 ORTHO05D006887 2.0e-39 165.6 102 82.4
PGR142G0372 Punica granatum HOM05D005547 ORTHO05D006887 2.6e-39 165.2 102 82.4
CSS0022085 Camellia sinensis var. sinensis HOM05D005547 ORTHO05D006887 3.4e-39 164.9 101 82.2
CSS0041328 Camellia sinensis var. sinensis HOM05D005547 ORTHO05D006887 3.4e-39 164.9 101 82.2
Nn8g41124 Nelumbo nucifera HOM05D005547 ORTHO05D006887 3.4e-39 164.9 101 78.2
Eucgr.B02628 Eucalyptus grandis HOM05D005547 ORTHO05D006887 4.5e-39 164.5 106 77.4
Phvul.007G019800 Phaseolus vulgaris HOM05D005547 ORTHO05D006887 4.5e-39 164.5 102 81.4
Psat6g231800 Pisum sativum HOM05D005547 ORTHO05D006887 4.5e-39 164.5 102 79.4
Ah.03g147190 Amaranthus hybridus HOM05D005547 ORTHO05D006887 5.8e-39 164.1 101 80.2
BcaB07g30360 Brassica carinata HOM05D005547 ORTHO05D006887 7.6e-39 163.7 103 80.6
Nitab4.5_0000129g0490 Nicotiana tabacum HOM05D005547 ORTHO05D006887 7.6e-39 163.7 104 77.9
ATR0807G170 Amborella trichopoda HOM05D005547 ORTHO05D006887 9.9e-39 163.3 102 80.4
MELO3C022540.2 Cucumis melo HOM05D005547 ORTHO05D006887 9.9e-39 163.3 101 81.2
Hma1.2p1_0068F.1_g037220 Hydrangea macrophylla HOM05D005547 ORTHO05D006887 9.9e-39 163.3 105 82.9
HanXRQChr12g0365891 Helianthus annuus HOM05D005547 ORTHO05D006887 1.3e-38 162.9 102 76.5
Lj5g0000051 Lotus japonicus HOM05D005547 ORTHO05D006887 1.3e-38 162.9 101 83.2
THA.LOC104824108 Tarenaya hassleriana HOM05D005547 ORTHO05D006887 1.3e-38 162.9 102 80.4
A02p32590 Brassica napus HOM05D005547 ORTHO05D006887 2.2e-38 162.2 102 78.4
DCAR_002637 Daucus carota HOM05D005547 ORTHO05D006887 2.2e-38 162.2 100 81.0
THA.LOC104805110 Tarenaya hassleriana HOM05D005547 ORTHO05D006887 2.9e-38 161.8 102 80.4
CAN.G458.10 Capsicum annuum HOM05D005547 ORTHO05D006887 6.4e-38 160.6 103 77.7
Sed0015045 Sechium edule HOM05D005547 ORTHO05D006887 6.4e-38 160.6 101 80.2
MSTRG.2096 Avicennia marina HOM05D005547 ORTHO05D006887 8.4e-38 160.2 102 76.5
Sed0021722 Sechium edule HOM05D005547 ORTHO05D006887 8.4e-38 160.2 101 79.2
SHI04242 Sapria himalayana HOM05D005547 ORTHO05D006887 1.1e-37 159.8 100 75.0
Lsat_1_v5_gn_5_36641 Lactuca sativa HOM05D005547 ORTHO05D006887 4.2e-37 157.9 102 73.5
Carub.0005s0107 Capsella rubella HOM05D005547 ORTHO05D006887 5.4e-37 157.5 102 76.5
Nitab4.5_0003889g0030 Nicotiana tabacum HOM05D005547 ORTHO05D006887 5.4e-37 157.5 102 77.5
Aa31LG2G7900 Aethionema arabicum HOM05D000012 ORTHO05D000567 7.1e-37 157.1 91 83.5
unitig_699.g19647 Utricularia gibba HOM05D005547 ORTHO05D006887 7.1e-37 157.1 102 76.5
CARHR144680 Cardamine hirsuta HOM05D005547 ORTHO05D006887 9.3e-37 156.8 102 76.5
Glyma.20G108500 Glycine max HOM05D005547 ORTHO05D006887 9.3e-37 156.8 102 76.5
RcHm_v2.0_Chr4g0445601 Rosa chinensis HOM05D005547 ORTHO05D006887 1.6e-36 156.0 102 76.5
AL5G11260 Arabidopsis lyrata HOM05D005547 ORTHO05D006887 1.0e-35 153.3 103 75.7
FAN07G0567 Fragaria x ananassa HOM05D005547 ORTHO05D006887 1.3e-35 152.9 105 74.3
FAN17G0411 Fragaria x ananassa HOM05D005547 ORTHO05D006887 1.3e-35 152.9 105 74.3
FvH4_4g35970 Fragaria vesca HOM05D005547 ORTHO05D006887 1.8e-35 152.5 105 74.3
FAN12G1717 Fragaria x ananassa HOM05D005547 ORTHO05D006887 1.8e-35 152.5 105 74.3
BcaB07g30717 Brassica carinata HOM05D005547 ORTHO05D006887 3.0e-35 151.8 91 81.3
BcaB07g30718 Brassica carinata HOM05D005547 ORTHO05D006887 3.0e-35 151.8 91 81.3
SalBow2G0745 Salvia bowleyana HOM05D005547 ORTHO05D006887 3.0e-35 151.8 93 80.6
FAN22G0273 Fragaria x ananassa HOM05D005547 ORTHO05D006887 3.9e-35 151.4 105 73.3
Peaxi162Scf00025g00059 Petunia axillaris HOM05D005547 ORTHO05D006887 8.7e-35 150.2 107 72.9
AT2G02050 Arabidopsis thaliana HOM05D005547 ORTHO05D006887 1.1e-34 149.8 103 74.8
HPP92_022540 Vanilla planifolia HOM05D005547 ORTHO05D006887 3.3e-34 148.3 98 76.5
Ah.02g120230 Amaranthus hybridus HOM05D005547 ORTHO05D006887 4.3e-34 147.9 101 73.3
AUR62003480 Chenopodium quinoa HOM05D005547 ORTHO05D006887 8.1e-33 143.7 93 75.3
Os03g0129900 Oryza sativa ssp. japonica HOM05D005547 ORTHO05D006887 8.1e-33 143.7 101 74.3
AUR62017789 Chenopodium quinoa HOM05D005547 ORTHO05D006887 1.8e-32 142.5 93 75.3
Zm00001eb002320 Zea mays HOM05D005547 ORTHO05D006887 2.4e-32 142.1 101 73.3
Nitab4.5_0000944g0080 Nicotiana tabacum HOM05D005547 ORTHO05D006887 5.3e-32 141.0 73 90.4
arahy.Tifrunner.gnm1.ann1.VES97W Arachis hypogaea HOM05D005547 ORTHO05D006887 4.5e-31 137.9 85 77.6
MD17G1273300 Malus domestica HOM05D005547 ORTHO05D006887 1.7e-30 136.0 73 87.7
Cc11_g05010 Coffea canephora HOM05D005547 ORTHO05D006887 3.8e-30 134.8 69 89.9
ECA233G2357 Erigeron canadensis HOM05D005547 ORTHO05D006887 4.9e-30 134.4 86 72.1
Haze_10731 Corylus avellana HOM05D005547 ORTHO05D006887 2.1e-28 129.0 88 73.9
Mapoly0058s0109 Marchantia polymorpha HOM05D005547 ORTHO05D006887 2.4e-24 115.5 82 67.1
Pp3c14_25130 Physcomitrium patens HOM05D005547 ORTHO05D006887 1.7e-22 109.4 73 67.1
Pp3c10_11190 Physcomitrium patens HOM05D005547 ORTHO05D006887 6.5e-22 107.5 74 64.9
arahy.Tifrunner.gnm1.ann1.FEK9G3 Arachis hypogaea HOM05D005547 ORTHO05D006887 3.5e-20 101.7 86 57.0
GSVIVG01000609001 Vitis vinifera HOM05D005547 ORTHO05D006887 4.6e-20 101.3 57 82.5
C02p50170 Brassica napus HOM05D005547 ORTHO05D006887 1.3e-19 99.8 68 73.5
BolC2t11096H Brassica oleracea HOM05D005547 ORTHO05D006887 1.3e-19 99.8 68 73.5
BcaC03g17109 Brassica carinata HOM05D005547 ORTHO05D006887 3.3e-18 95.1 54 81.5
Gorai.002G169600 Gossypium raimondii HOM05D005547 ORTHO05D006887 3.3e-18 95.1 102 53.9
CBR_g4786 Chara braunii HOM05D005547 ORTHO05D006887 8.2e-17 90.5 70 55.7
SMO356G0087 Selaginella moellendorffii HOM05D005547 ORTHO05D006887 1.8e-16 89.4 65 58.5
Glyma.14G132200 Glycine max HOM05D005547 ORTHO05D006887 6.9e-16 87.4 95 55.8
MCO06G054 Micromonas commoda HOM05D005547 ORTHO05D006887 2.6e-15 85.5 55 61.8
PRCOL_00006370 Prasinoderma coloniale HOM05D005547 ORTHO05D006887 8.2e-09 63.9 78 42.3


User provided reference genes

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