Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 9.1e-173 610.1 308 100.0
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 2.0e-132 476.1 260 92.7
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 3.6e-113 412.1 261 79.7
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 1.9e-109 399.8 260 79.6
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 1.9e-109 399.8 262 78.6
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 2.5e-106 389.4 291 71.1
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 2.8e-105 386.0 262 74.8
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 1.8e-104 383.3 262 75.6
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 2.4e-104 382.9 263 74.9
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 6.9e-104 381.3 262 76.0
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 1.2e-103 380.6 258 73.3
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 1.2e-103 380.6 284 68.7
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 2.0e-103 379.8 261 75.5
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 5.8e-103 378.3 283 70.7
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 7.6e-103 377.9 261 74.7
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 1.3e-102 377.1 260 72.7
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 1.7e-102 376.7 260 72.7
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.2e-102 376.3 270 73.7
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 3.8e-102 375.6 263 73.0
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 3.8e-102 375.6 294 68.0
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 4.9e-102 375.2 288 70.5
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 6.4e-102 374.8 288 69.8
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 1.1e-101 374.0 260 74.6
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.4e-101 372.9 268 72.4
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 4.2e-101 372.1 288 70.5
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 5.4e-101 371.7 260 72.7
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 5.4e-101 371.7 264 74.2
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 7.1e-101 371.3 262 73.3
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 7.1e-101 371.3 260 75.8
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 9.3e-101 370.9 263 72.6
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 1.2e-100 370.5 260 72.7
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 2.1e-100 369.8 261 71.6
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 2.1e-100 369.8 265 73.6
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 3.5e-100 369.0 262 73.7
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 4.6e-100 368.6 262 71.8
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 6.0e-100 368.2 263 72.6
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 7.9e-100 367.9 262 71.8
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 7.9e-100 367.9 263 72.2
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 1.0e-99 367.5 260 71.2
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.8e-99 366.7 262 71.8
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.8e-99 366.7 262 71.4
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 3.0e-99 365.9 261 73.9
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 5.1e-99 365.2 260 70.8
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 2.5e-98 362.8 260 70.8
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 3.3e-98 362.5 220 82.7
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 4.3e-98 362.1 260 70.0
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 7.4e-98 361.3 272 70.6
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 9.6e-98 360.9 220 82.3
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 1.3e-97 360.5 233 79.0
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 2.1e-97 359.8 289 66.1
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 3.7e-97 359.0 260 72.7
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 4.8e-97 358.6 260 70.0
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 6.2e-97 358.2 263 68.8
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 6.2e-97 358.2 260 70.4
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 2.4e-96 356.3 260 70.8
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 5.3e-96 355.1 260 68.8
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 5.3e-96 355.1 260 68.8
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 5.3e-96 355.1 236 75.0
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 6.9e-96 354.8 220 80.9
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 9.0e-96 354.4 263 71.5
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 1.2e-95 354.0 234 76.1
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 2.0e-95 353.2 260 69.6
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 2.0e-95 353.2 260 70.0
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 2.6e-95 352.8 260 68.8
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 2.6e-95 352.8 282 64.9
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 2.6e-95 352.8 270 69.3
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 3.4e-95 352.4 263 68.4
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 3.4e-95 352.4 260 68.8
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 4.5e-95 352.1 230 75.2
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 5.8e-95 351.7 262 71.0
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 9.9e-95 350.9 260 68.5
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 2.2e-94 349.7 264 69.7
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 2.2e-94 349.7 261 68.6
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 6.4e-94 348.2 264 69.3
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 1.1e-93 347.4 292 62.7
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 4.2e-93 345.5 260 68.1
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 4.2e-93 345.5 260 68.1
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 4.2e-93 345.5 260 68.1
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 5.5e-93 345.1 229 73.4
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 9.3e-93 344.4 260 66.5
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 9.3e-93 344.4 261 67.4
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.2e-92 344.0 205 82.4
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 1.6e-92 343.6 261 69.0
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 1.6e-92 343.6 260 66.5
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 3.5e-92 342.4 261 68.6
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 1.3e-91 340.5 206 82.0
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 1.8e-91 340.1 205 81.0
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.3e-91 339.7 263 67.3
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 3.0e-91 339.3 265 66.0
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 3.0e-91 339.3 265 66.0
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 3.9e-91 339.0 284 62.7
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 1.1e-90 337.4 206 81.1
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 2.1e-89 333.2 262 67.9
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 6.2e-89 331.6 205 79.0
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 8.2e-89 331.3 250 68.8
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 1.8e-88 330.1 221 73.3
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 4.0e-88 328.9 211 76.3
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 4.0e-88 328.9 198 79.8
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 1.0e-86 324.3 199 80.4
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 1.7e-86 323.6 211 76.8
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 8.4e-86 321.2 236 72.5
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 7.1e-85 318.2 219 71.2
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 1.2e-84 317.4 238 66.8
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 4.6e-84 315.5 222 70.3
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 4.6e-84 315.5 223 73.5
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 5.1e-83 312.0 222 69.8
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 2.5e-82 309.7 210 71.4
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 3.3e-82 309.3 238 64.3
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 2.2e-81 306.6 210 70.5
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 8.2e-81 304.7 241 66.0
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 2.6e-79 299.7 260 60.0
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 1.4e-77 293.9 176 80.7
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 5.5e-77 292.0 176 81.8
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 1.8e-75 287.0 175 77.7
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 3.9e-75 285.8 230 63.9
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 5.1e-75 285.4 207 68.1
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 6.7e-75 285.0 167 85.0
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 2.5e-74 283.1 168 81.0
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 3.3e-74 282.7 176 81.2
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 3.3e-74 282.7 207 67.1
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 9.7e-74 281.2 176 76.1
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 1.1e-72 277.7 176 75.0
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 2.4e-72 276.6 204 69.6
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 3.4e-71 272.7 206 65.5
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.7e-70 270.4 176 76.7
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 9.4e-69 264.6 176 73.9
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 4.7e-68 262.3 205 68.8
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 1.0e-67 261.2 215 62.8
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.1e-66 257.7 193 69.9
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 4.4e-66 255.8 260 53.5
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 4.4e-66 255.8 215 60.9
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 6.3e-65 251.9 210 61.9
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.9e-61 240.4 163 74.8
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 2.6e-55 219.9 207 58.9
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 4.5e-55 219.2 163 66.9
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 5.9e-55 218.8 210 52.4
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 1.7e-54 217.2 203 53.2
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.1e-53 214.5 136 77.2
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 5.5e-53 212.2 146 74.0
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 1.3e-49 201.1 123 78.9
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.0e-46 191.4 139 71.9
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.5e-45 186.8 123 78.0
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.7e-41 174.1 139 64.0
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.7e-41 174.1 139 64.0
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 7.0e-40 168.7 158 60.8
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 2.0e-34 150.6 124 62.9
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.6e-34 150.2 108 72.2
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 8.9e-27 125.2 74 81.1
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 2.0e-26 124.0 74 81.1
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 3.4e-26 123.2 74 79.7
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 3.4e-26 123.2 144 49.3
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 4.4e-26 122.9 74 79.7
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 2.2e-25 120.6 74 77.0
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 3.7e-25 119.8 90 66.7
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 7.0e-24 115.5 94 62.8
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 2.0e-23 114.0 197 36.0
RcHm_v2.0_Chr5g0060451 Rosa chinensis HOM05D004185 ORTHO05D005294 1.4e-16 91.3 83 62.7
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.5e-13 81.3 47 80.9
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 8.1e-12 75.5 44 79.5
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 4.0e-11 73.2 41 87.8
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 8.9e-11 72.0 41 87.8
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 1.2e-10 71.6 44 72.7
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 3.7e-09 66.6 40 87.5
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 1.4e-08 64.7 43 79.1
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 2.4e-08 63.9 230 26.5
A09p34420 Brassica napus HOM05D004185 ORTHO05D040565 7.1e-08 62.4 38 68.4
BraA09t38986Z Brassica rapa HOM05D004185 ORTHO05D040565 7.1e-08 62.4 38 68.4
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 2.1e-07 60.8 41 68.3


User provided reference genes

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