Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 0.0e+00 3320.4 1720 100.0
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2675.6 1721 80.1
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2651.3 1722 79.4
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 0.0e+00 2649.8 1723 79.5
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2644.4 1723 79.0
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2642.1 1725 78.4
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2637.4 1721 78.6
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 0.0e+00 2632.8 1724 79.1
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 0.0e+00 2629.7 1725 78.1
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2624.7 1723 79.0
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2619.3 1719 77.7
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 2608.9 1726 77.6
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2599.3 1722 77.9
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2585.4 1723 76.5
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 0.0e+00 2572.7 1734 76.4
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 2570.0 1724 77.3
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 0.0e+00 2568.5 1704 76.7
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 0.0e+00 2559.6 1744 76.2
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 0.0e+00 2546.2 1727 75.7
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 0.0e+00 2545.4 1724 75.7
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2545.0 1732 76.6
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 0.0e+00 2543.8 1726 76.2
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2536.9 1704 75.9
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 0.0e+00 2532.7 1723 76.3
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2528.8 1717 75.7
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2522.7 1727 75.3
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2513.8 1722 76.1
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2506.5 1727 74.9
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 0.0e+00 2500.7 1730 74.9
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2489.9 1727 74.6
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 0.0e+00 2464.9 1722 73.1
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 0.0e+00 2461.0 1730 74.3
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 0.0e+00 2460.3 1724 73.6
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 0.0e+00 2455.2 1731 74.1
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 0.0e+00 2434.4 1783 71.5
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 0.0e+00 2422.1 1745 71.2
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 0.0e+00 2412.9 1725 72.8
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 0.0e+00 2402.1 1774 72.6
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 0.0e+00 2397.1 1740 70.5
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 0.0e+00 2397.1 1710 73.4
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 0.0e+00 2381.7 1743 68.8
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2380.1 1722 71.7
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2379.4 1730 71.3
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 0.0e+00 2372.8 1694 72.9
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 0.0e+00 2370.9 1724 71.2
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 2370.9 1739 70.6
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 0.0e+00 2369.7 1743 68.4
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 0.0e+00 2358.9 1690 72.6
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 0.0e+00 2354.7 1715 71.2
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 0.0e+00 2354.7 1762 69.3
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 2353.6 1721 69.1
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 0.0e+00 2352.4 1721 70.2
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 0.0e+00 2350.1 1750 69.5
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 0.0e+00 2349.3 1700 71.9
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2346.6 1726 69.9
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2336.6 1709 71.3
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 0.0e+00 2335.5 1716 71.0
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 0.0e+00 2333.5 1871 67.5
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 0.0e+00 2331.2 1742 69.9
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 0.0e+00 2315.8 1720 70.4
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2305.4 1711 70.0
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 0.0e+00 2303.9 1720 69.7
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2295.4 1713 69.9
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2291.2 1726 68.8
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 0.0e+00 2290.8 1708 69.9
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 0.0e+00 2277.7 1711 69.1
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 0.0e+00 2273.4 1732 68.7
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 0.0e+00 2271.5 1691 69.7
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2270.0 1785 68.4
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 0.0e+00 2263.0 1710 69.2
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 0.0e+00 2223.0 1700 67.1
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2220.3 1707 68.2
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 0.0e+00 2218.4 1414 77.9
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 0.0e+00 2215.7 1691 67.9
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2210.6 1690 68.0
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 0.0e+00 2207.2 2142 58.6
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2193.7 1734 65.9
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 0.0e+00 2191.8 1722 67.5
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2168.7 1715 66.6
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 0.0e+00 2152.1 1619 68.5
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2147.5 1726 64.9
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 0.0e+00 2135.9 1715 64.4
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 0.0e+00 2121.7 1159 88.7
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 0.0e+00 2100.1 1718 64.5
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 0.0e+00 2070.0 1294 77.1
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 2065.0 1292 77.0
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 0.0e+00 2050.8 1696 65.0
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 0.0e+00 2027.3 1732 61.2
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 0.0e+00 1966.0 1459 69.5
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 0.0e+00 1954.5 1826 59.6
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 0.0e+00 1934.8 1686 60.1
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 0.0e+00 1882.5 1738 62.4
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 0.0e+00 1825.8 1450 67.0
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1734.2 1723 53.8
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1713.7 1715 53.4
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1709.5 1707 53.4
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1697.9 1707 54.8
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 0.0e+00 1675.2 1632 54.1
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1669.1 1045 77.8
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1579.7 1147 75.0
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 0.0e+00 1569.7 936 80.2
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1514.2 1084 66.5
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 0.0e+00 1437.2 1094 71.8
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 1433.3 1185 65.6
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1392.5 1369 56.4
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1245.7 939 72.6
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1223.0 910 66.9
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 2.9e-300 1036.2 742 68.6
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 5.4e-299 1031.9 616 80.5
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 1.6e-279 967.2 682 66.1
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 5.5e-267 925.6 552 82.2
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 4.6e-266 922.5 601 74.0
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 1.6e-258 897.5 1590 37.0
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 1.3e-255 887.9 813 62.6
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 6.4e-207 726.1 847 42.6
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 3.3e-203 713.8 427 81.0
Glyma.15G192800 Glycine max HOM05D004072 ORTHO05D005933 3.9e-164 583.9 587 62.7
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 1.4e-158 565.5 376 73.4
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 2.4e-158 564.7 329 83.9
Lj1A1163T36 Lonicera japonica HOM05D004072 ORTHO05D005933 8.4e-151 539.7 627 57.9
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 1.2e-128 466.1 698 41.5
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 3.8e-127 461.1 908 33.9
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 4.5e-112 411.0 246 76.4
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 2.5e-110 405.2 336 65.8
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 2.1e-109 402.1 241 82.2
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 4.0e-108 397.9 458 44.3
HPP92_000970 Vanilla planifolia HOM05D004072 ORTHO05D005933 3.5e-104 384.8 527 52.6
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 2.2e-98 365.5 214 78.0
Glyma.09G084500 Glycine max HOM05D004072 ORTHO05D005933 6.8e-84 317.4 386 55.4
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 2.6e-83 315.5 202 79.7
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 8.9e-76 290.4 177 72.9
Atru.chr10.903 Acer truncatum HOM05D004072 ORTHO05D021063 8.3e-74 283.9 225 80.0
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 2.8e-69 268.9 176 69.9
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 8.1e-61 240.7 153 73.2
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 4.3e-54 218.4 203 50.7
Cpa.g.sc17.83 Carica papaya HOM05D004072 ORTHO05D005933 7.6e-51 207.6 130 72.3
Cpa.g.sc17.80 Carica papaya HOM05D004072 ORTHO05D021063 6.4e-50 204.5 287 53.0
VMungo1309G0832 Vigna mungo HOM05D004072 ORTHO05D005933 2.4e-49 202.6 438 40.2
PGSC0003DMG400021174 Solanum tuberosum HOM05D004072 ORTHO05D005933 3.0e-47 195.7 115 82.6
QL05p053334 Quercus lobata HOM05D004072 ORTHO05D005933 1.4e-41 176.8 98 88.8
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 3.0e-39 169.1 130 60.0
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 6.7e-39 167.9 206 52.4
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 8.2e-37 161.0 169 53.8
CSS0023750 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 5.8e-35 154.8 288 45.8
CBR_g34931 Chara braunii HOM05D000019 ORTHO05D001702 4.3e-30 138.7 123 53.7
Actinidia04621 Actinidia chinensis HOM05D004072 ORTHO05D005933 2.2e-29 136.3 111 60.4
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 7.6e-27 127.9 88 70.5
Cpa.g.sc17.84 Carica papaya HOM05D004072 ORTHO05D019491 2.5e-25 122.9 83 68.7
Medtr3g010273 Medicago truncatula HOM05D004072 ORTHO05D005933 1.6e-24 120.2 93 67.7
Hma1.2p1_1600F.1_g293130 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 7.9e-24 117.9 63 92.1
Cc09_g08270 Coffea canephora HOM05D004072 ORTHO05D005933 2.3e-23 116.3 73 79.5
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 3.0e-23 115.9 215 37.7
CSS0009414 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.3e-21 110.5 59 83.1
Cc09_g08260 Coffea canephora HOM05D004072 ORTHO05D005933 9.1e-20 104.4 75 74.7
CAN.G23816.1 Capsicum annuum HOM05D004072 ORTHO05D038051 1.5e-19 103.6 84 60.7
SalBow5G3729 Salvia bowleyana HOM05D004072 ORTHO05D007163 1.1e-17 97.4 98 49.0
Actinidia36004 Actinidia chinensis HOM05D004072 ORTHO05D038051 3.2e-17 95.9 58 74.1
CSS0034048 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 3.2e-17 95.9 288 37.8
RcHm_v2.0_Chr1g0313151 Rosa chinensis HOM05D004072 ORTHO05D005933 3.6e-16 92.4 57 82.5
Nn1g03421 Nelumbo nucifera HOM05D004072 ORTHO05D019491 3.0e-15 89.4 51 78.4
Actinidia36003 Actinidia chinensis HOM05D004072 ORTHO05D021063 2.6e-14 86.3 89 61.8
Duzib248G0219 Durio zibethinus HOM05D004072 ORTHO05D019491 3.3e-14 85.9 94 51.1
CARHR128810 Cardamine hirsuta HOM05D004072 ORTHO05D019491 3.1e-12 79.3 44 75.0
PGSC0003DMG400002279 Solanum tuberosum HOM05D004072 ORTHO05D005933 3.1e-12 79.3 50 80.0
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 2.0e-11 76.6 52 73.1
SalBow5G4417 Salvia bowleyana HOM05D004072 ORTHO05D007163 1.7e-10 73.6 112 39.3
Lsat_1_v5_gn_6_117121 Lactuca sativa HOM05D004072 ORTHO05D001686 1.1e-09 70.9 61 59.0
Lsat_1_v5_gn_6_30620 Lactuca sativa HOM05D000062 ORTHO05D013119 5.5e-09 68.6 165 30.9
Duzib248G0875 Durio zibethinus HOM05D000121 ORTHO05D000102 1.2e-08 67.4 106 42.5
Lsat_1_v5_gn_5_73260 Lactuca sativa HOM05D000371 ORTHO05D006177 1.2e-08 67.4 57 56.1
Lsat_1_v5_gn_9_121081 Lactuca sativa HOM05D004072 ORTHO05D001686 2.7e-08 66.2 35 82.9
Lsat_1_v5_gn_7_25100 Lactuca sativa HOM05D003161 ORTHO05D005173 5.2e-07 62.0 68 48.5
SEGI_36323 Sequoiadendron giganteum HOM05D004072 ORTHO05D385563 8.8e-07 61.2 54 53.7
CBR_g34927 Chara braunii HOM05D000019 ORTHO05D000002 2.0e-06 60.1 102 28.4
Actinidia04622 Actinidia chinensis HOM05D004072 ORTHO05D019491 3.3e-06 59.3 44 59.1
Oeu025478.1 Olea europaea HOM05D002278 ORTHO05D007219 4.4e-06 58.9 126 31.0


User provided reference genes

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