Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 3.4e-135 485.0 239 100.0
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 3.6e-84 315.5 148 100.0
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 6.2e-60 235.0 273 49.5
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 2.2e-49 199.9 273 41.4
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 1.3e-46 190.7 273 41.0
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 1.7e-46 190.3 271 41.3
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 1.7e-46 190.3 273 42.1
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 3.9e-46 189.1 273 42.1
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 1.1e-45 187.6 271 41.0
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 1.9e-45 186.8 273 40.3
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 9.6e-45 184.5 273 41.4
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 9.6e-45 184.5 273 40.3
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 1.2e-44 184.1 273 41.0
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 8.1e-44 181.4 271 40.2
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 1.4e-43 180.6 273 40.7
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 2.4e-43 179.9 234 44.0
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 2.4e-43 179.9 273 39.2
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 2.4e-43 179.9 273 39.2
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 4.0e-43 179.1 273 39.2
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 4.0e-43 179.1 273 39.2
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 4.0e-43 179.1 273 39.2
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 5.2e-43 178.7 273 39.2
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 5.2e-43 178.7 273 40.3
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 6.9e-43 178.3 277 38.6
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 6.9e-43 178.3 273 39.6
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 2.0e-42 176.8 269 40.5
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 2.0e-42 176.8 273 39.6
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 2.0e-42 176.8 156 57.7
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 3.4e-42 176.0 273 39.9
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 3.4e-42 176.0 273 38.8
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 4.4e-42 175.6 291 37.5
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 9.9e-42 174.5 273 38.8
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 2.2e-41 173.3 156 55.1
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 3.8e-41 172.6 273 38.1
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 3.8e-41 172.6 273 38.8
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 3.8e-41 172.6 274 38.3
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 4.9e-41 172.2 273 37.7
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 1.4e-40 170.6 273 37.7
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 1.4e-40 170.6 273 37.7
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 1.4e-40 170.6 156 54.5
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 9.3e-40 167.9 151 55.6
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 9.3e-40 167.9 273 37.7
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 1.2e-39 167.5 154 54.5
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 1.2e-39 167.5 156 55.8
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 1.6e-39 167.2 271 36.9
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 2.1e-39 166.8 151 55.0
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 2.7e-39 166.4 151 55.6
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 2.7e-39 166.4 156 53.8
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 3.5e-39 166.0 273 37.7
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 6.0e-39 165.2 156 52.6
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 6.0e-39 165.2 151 54.3
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 6.0e-39 165.2 156 52.6
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 6.0e-39 165.2 271 37.6
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 7.8e-39 164.9 151 55.0
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 1.0e-38 164.5 151 55.0
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 1.0e-38 164.5 156 52.6
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 1.0e-38 164.5 156 53.8
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 1.0e-38 164.5 156 53.2
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 1.7e-38 163.7 151 54.3
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 2.3e-38 163.3 155 52.9
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 2.3e-38 163.3 155 52.9
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 2.3e-38 163.3 156 53.2
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 3.0e-38 162.9 155 52.3
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 3.0e-38 162.9 156 51.9
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 3.0e-38 162.9 273 37.0
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 6.6e-38 161.8 156 53.2
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 6.6e-38 161.8 156 50.6
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 8.7e-38 161.4 156 53.8
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.9e-37 160.2 155 52.3
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 1.9e-37 160.2 156 52.6
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 1.9e-37 160.2 171 49.7
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 2.5e-37 159.8 156 51.3
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 3.3e-37 159.5 156 50.6
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 3.3e-37 159.5 273 35.9
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 5.6e-37 158.7 156 51.9
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 5.6e-37 158.7 260 39.2
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 7.3e-37 158.3 271 35.8
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 9.6e-37 157.9 151 48.3
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 9.6e-37 157.9 156 51.3
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 1.3e-36 157.5 156 51.9
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 1.6e-36 157.1 157 51.0
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 1.6e-36 157.1 156 51.9
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 2.1e-36 156.8 151 53.6
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 2.1e-36 156.8 156 49.4
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 2.8e-36 156.4 150 50.7
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 2.8e-36 156.4 156 49.4
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 3.6e-36 156.0 156 50.6
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 8.1e-36 154.8 151 53.0
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 1.4e-35 154.1 156 49.4
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 1.4e-35 154.1 156 50.6
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 1.8e-35 153.7 268 36.9
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 2.4e-35 153.3 152 51.3
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 4.0e-35 152.5 151 49.0
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 6.9e-35 151.8 156 50.6
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 6.9e-35 151.8 156 50.6
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 6.9e-35 151.8 156 50.6
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 6.9e-35 151.8 149 52.3
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 9.0e-35 151.4 269 36.1
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 1.2e-34 151.0 269 36.1
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 1.5e-34 150.6 269 35.3
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 1.5e-34 150.6 269 35.3
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 2.0e-34 150.2 156 48.7
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 2.6e-34 149.8 269 36.1
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 4.5e-34 149.1 269 35.7
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 2.9e-33 146.4 152 48.7
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 2.9e-33 146.4 156 46.2
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 4.9e-33 145.6 156 45.5
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 8.4e-33 144.8 273 35.5
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 2.4e-32 143.3 273 34.4
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 2.4e-32 143.3 273 32.2
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 1.0e-30 137.9 152 48.7
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 1.0e-30 137.9 77 72.7
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 1.3e-30 137.5 199 39.7
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 3.0e-30 136.3 151 45.0
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 3.9e-30 136.0 75 74.7
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 6.7e-30 135.2 76 71.1
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 8.7e-30 134.8 288 34.0
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 5.6e-29 132.1 77 71.4
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 9.6e-29 131.3 128 52.3
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 2.6e-26 123.2 156 44.9
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 1.1e-24 117.9 184 38.0
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 9.3e-24 114.8 151 42.4
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 2.1e-23 113.6 144 47.2
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 1.0e-22 111.3 156 41.0
RcHm_v2.0_Chr7g0206221 Rosa chinensis HOM05D004011 ORTHO05D005290 5.6e-21 105.5 57 71.9
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 9.6e-21 104.8 149 43.6
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 1.6e-20 104.0 146 38.4
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 3.1e-19 99.8 121 47.9
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 4.2e-16 89.4 179 29.1
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 1.2e-15 87.8 145 35.2
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 1.1e-13 81.3 198 34.3
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 4.5e-10 69.3 39 89.7
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 7.7e-10 68.6 33 97.0
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 2.2e-09 67.0 32 90.6
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 5.0e-09 65.9 98 38.8
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 5.0e-09 65.9 54 59.3
SMO203G0050 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 9.4e-08 61.6 107 30.8
SMO331G0015 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.6e-07 60.8 107 31.8
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.6e-07 60.8 107 30.8
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 7.9e-07 58.5 33 75.8
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 7.9e-07 58.5 33 75.8
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 3.9e-06 56.2 98 35.7
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 3.9e-06 56.2 33 75.8
AL2G16820 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 5.1e-06 55.8 32 71.9
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 5.1e-06 55.8 32 68.8
RcHm_v2.0_Chr2g0130381 Rosa chinensis HOM05D000321 ORTHO05D000204 5.1e-06 55.8 31 67.7


User provided reference genes

Program Settings