Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr10.813 Acer truncatum HOM05D004818 ORTHO05D005444 2.1e-25 118.2 59 100.0
Sed0015314 Sechium edule HOM05D004818 ORTHO05D005444 3.9e-16 87.4 53 81.1
Ciclev10003088m.g Citrus clementina HOM05D004818 ORTHO05D005444 5.1e-16 87.0 53 79.2
Gohir.A04G123300 Gossypium hirsutum HOM05D004818 ORTHO05D005444 1.1e-15 85.9 53 81.1
Sed0012644 Sechium edule HOM05D004818 ORTHO05D005444 1.5e-15 85.5 53 79.2
Prupe.1G368600 Prunus persica HOM05D004818 ORTHO05D005444 1.9e-15 85.1 53 77.4
Atru.chr5.3177 Acer truncatum HOM05D004818 ORTHO05D005444 2.5e-15 84.7 53 79.2
ClCG05G018500 Citrullus lanatus HOM05D004818 ORTHO05D005444 2.5e-15 84.7 53 77.4
Lalb_Chr19g0139031 Lupinus albus HOM05D004818 ORTHO05D005444 2.5e-15 84.7 53 81.1
TAR381G0131 Trochodendron aralioides HOM05D004818 ORTHO05D005444 2.5e-15 84.7 53 79.2
Lalb_Chr03g0025281 Lupinus albus HOM05D004818 ORTHO05D005444 3.3e-15 84.3 53 79.2
CANSAT11G1677 Cannabis sativa HOM05D004818 ORTHO05D005444 4.3e-15 84.0 53 79.2
Glyma.12G036000 Glycine max HOM05D004818 ORTHO05D005444 4.3e-15 84.0 53 79.2
Gohir.D04G165300 Gossypium hirsutum HOM05D004818 ORTHO05D005444 4.3e-15 84.0 53 79.2
Lalb_Chr01g0002101 Lupinus albus HOM05D004818 ORTHO05D005444 4.3e-15 84.0 53 79.2
Manes.18G015600 Manihot esculenta HOM05D004818 ORTHO05D005444 4.3e-15 84.0 53 77.4
TAR625G1092 Trochodendron aralioides HOM05D004818 ORTHO05D005444 4.3e-15 84.0 53 77.4
CiPaw.09G132900 Carya illinoinensis HOM05D004818 ORTHO05D005444 5.7e-15 83.6 53 75.5
COL.COLO4_10615 Corchorus olitorius HOM05D004818 ORTHO05D005444 5.7e-15 83.6 53 79.2
Potri.005G236500 Populus trichocarpa HOM05D004818 ORTHO05D005444 5.7e-15 83.6 53 77.4
Thecc.02G073200 Theobroma cacao HOM05D004818 ORTHO05D005444 5.7e-15 83.6 53 79.2
MELO3C013404.2 Cucumis melo HOM05D004818 ORTHO05D005444 7.4e-15 83.2 53 79.2
CsaV3_7G000550 Cucumis sativus L. HOM05D004818 ORTHO05D005444 7.4e-15 83.2 53 79.2
Sed0018748 Sechium edule HOM05D004818 ORTHO05D005444 7.4e-15 83.2 53 79.2
Gohir.D13G090600 Gossypium hirsutum HOM05D004818 ORTHO05D005444 1.3e-14 82.4 53 77.4
Gorai.001G244100 Gossypium raimondii HOM05D004818 ORTHO05D005444 1.3e-14 82.4 53 77.4
PGR142G0584 Punica granatum HOM05D004818 ORTHO05D005444 1.3e-14 82.4 53 77.4
TAR628G1422 Trochodendron aralioides HOM05D004818 ORTHO05D005444 1.3e-14 82.4 53 77.4
VMungo1127G0843 Vigna mungo HOM05D004818 ORTHO05D005444 1.3e-14 82.4 53 77.4
Cfa005123 Carpinus fangiana HOM05D004818 ORTHO05D005444 1.7e-14 82.0 53 77.4
Ciclev10029771m.g Citrus clementina HOM05D004818 ORTHO05D005444 1.7e-14 82.0 53 79.2
Medtr4g072130 Medicago truncatula HOM05D004818 ORTHO05D005444 1.7e-14 82.0 52 78.8
Phvul.011G038100 Phaseolus vulgaris HOM05D004818 ORTHO05D005444 2.2e-14 81.6 53 77.4
Manes.04G082300 Manihot esculenta HOM05D004818 ORTHO05D005444 2.8e-14 81.3 53 75.5
Sed0003347 Sechium edule HOM05D004818 ORTHO05D005444 2.8e-14 81.3 53 77.4
FAN15G1739 Fragaria x ananassa HOM05D004818 ORTHO05D005444 3.7e-14 80.9 53 75.5
RcHm_v2.0_Chr6g0268521 Rosa chinensis HOM05D004818 ORTHO05D005444 3.7e-14 80.9 53 75.5
Sabra02G0020200 Salix brachista HOM05D004047 ORTHO05D004772 3.7e-14 80.9 53 75.5
Duzib248G1544 Durio zibethinus HOM05D004818 ORTHO05D005444 4.8e-14 80.5 53 75.5
Gohir.A12G040700 Gossypium hirsutum HOM05D004818 ORTHO05D005444 6.3e-14 80.1 52 78.8
MD10G1061700 Malus domestica HOM05D004818 ORTHO05D005444 6.3e-14 80.1 53 77.4
CiPaw.06G127200 Carya illinoinensis HOM05D004818 ORTHO05D005444 8.2e-14 79.7 53 77.4
Gohir.A13G086700 Gossypium hirsutum HOM05D004818 ORTHO05D005444 8.2e-14 79.7 53 75.5
Potri.004G164066 Populus trichocarpa HOM05D004818 ORTHO05D005444 8.2e-14 79.7 53 75.5
Ca_09579_v3 Cicer arietinum L. HOM05D004818 ORTHO05D005444 1.1e-13 79.3 53 73.6
Potri.002G024900 Populus trichocarpa HOM05D004818 ORTHO05D005444 1.1e-13 79.3 53 73.6
TWI31G1300 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 1.1e-13 79.3 53 73.6
CiPaw.05G074500 Carya illinoinensis HOM05D004818 ORTHO05D005444 1.4e-13 79.0 53 75.5
Duzib052G0912 Durio zibethinus HOM05D004818 ORTHO05D005444 1.4e-13 79.0 53 75.5
Eucgr.G01742 Eucalyptus grandis HOM05D004818 ORTHO05D005444 1.4e-13 79.0 53 73.6
Eucgr.I01336 Eucalyptus grandis HOM05D004818 ORTHO05D005444 1.8e-13 78.6 53 71.7
MD00G1066700 Malus domestica HOM05D004818 ORTHO05D005444 1.8e-13 78.6 53 73.6
Solyc01g110540.3 Solanum lycopersicum HOM05D004818 ORTHO05D005444 2.4e-13 78.2 53 73.6
PGSC0003DMG400001656 Solanum tuberosum HOM05D004818 ORTHO05D005444 2.4e-13 78.2 53 73.6
Cpa.g.sc150.3 Carica papaya HOM05D004818 ORTHO05D005444 3.1e-13 77.8 53 75.5
HanXRQChr17g0551041 Helianthus annuus HOM05D004818 ORTHO05D005444 9.1e-13 76.3 53 71.7
PGSC0003DMG400004424 Solanum tuberosum HOM05D004818 ORTHO05D005444 9.1e-13 76.3 53 73.6
TWI75G0908 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 9.1e-13 76.3 52 73.1
Sabra09G0096800 Salix brachista HOM05D004818 ORTHO05D005444 1.2e-12 75.9 55 72.7
TWI79G1427 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 1.2e-12 75.9 53 71.7
CAN.G104.4 Capsicum annuum HOM05D004818 ORTHO05D005444 1.5e-12 75.5 53 75.5
Migut.B00126 Erythranthe guttata HOM05D004818 ORTHO05D005444 1.5e-12 75.5 53 67.9
CAN.G1329.6 Capsicum annuum HOM05D004818 ORTHO05D005444 2.0e-12 75.1 53 71.7
Potri.009G125832 Populus trichocarpa HOM05D004818 ORTHO05D005444 2.6e-12 74.7 55 72.7
Lj3g0020574 Lotus japonicus HOM05D004818 ORTHO05D005444 3.4e-12 74.3 53 71.7
Migut.N01294 Erythranthe guttata HOM05D004818 ORTHO05D005444 4.5e-12 73.9 53 66.0
Lsat_1_v5_gn_8_127140 Lactuca sativa HOM05D004818 ORTHO05D005444 5.9e-12 73.6 53 69.8
Aa31LG5G12500 Aethionema arabicum HOM05D004818 ORTHO05D005444 7.7e-12 73.2 53 69.8
THA.LOC104821019 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 7.7e-12 73.2 53 67.9
Lsat_1_v5_gn_4_67521 Lactuca sativa HOM05D004818 ORTHO05D005444 1.3e-11 72.4 53 69.8
RcHm_v2.0_Chr6g0302511 Rosa chinensis HOM05D004818 ORTHO05D005444 1.3e-11 72.4 53 66.0
Sp6g28750 Schrenkiella parvula HOM05D004818 ORTHO05D005444 1.3e-11 72.4 53 67.9
AL3G11130 Arabidopsis lyrata HOM05D004818 ORTHO05D005444 1.7e-11 72.0 53 69.8
Carub.0003s0104 Capsella rubella HOM05D004818 ORTHO05D005444 2.2e-11 71.6 53 67.9
Thhalv10015231m.g Eutrema salsugineum HOM05D004818 ORTHO05D005444 2.9e-11 71.2 53 66.0
Prupe.8G082400 Prunus persica HOM05D004818 ORTHO05D005444 2.9e-11 71.2 53 73.6
GSVIVG01009863001 Vitis vinifera HOM05D004818 ORTHO05D005444 3.8e-11 70.9 66 57.6
BcaC05g30384 Brassica carinata HOM05D004818 ORTHO05D005444 6.5e-11 70.1 53 66.0
A03p32690 Brassica napus HOM05D004818 ORTHO05D005444 6.5e-11 70.1 53 66.0
A05p44830 Brassica napus HOM05D004818 ORTHO05D005444 6.5e-11 70.1 53 66.0
C03p39790 Brassica napus HOM05D004818 ORTHO05D005444 6.5e-11 70.1 53 66.0
BolC3t16243H Brassica oleracea HOM05D004818 ORTHO05D005444 6.5e-11 70.1 53 66.0
Glyma.09G222500 Glycine max HOM05D004818 ORTHO05D005444 6.5e-11 70.1 77 54.5
Sp3g00990 Schrenkiella parvula HOM05D004818 ORTHO05D005444 6.5e-11 70.1 53 66.0
THA.LOC109116196 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 8.5e-11 69.7 53 66.0
Atru.chr13.327 Acer truncatum HOM05D004818 ORTHO05D005444 1.1e-10 69.3 43 81.4
AT5G15320 Arabidopsis thaliana HOM05D004818 ORTHO05D005444 1.4e-10 68.9 53 64.2
Carub.0006s1351 Capsella rubella HOM05D004818 ORTHO05D005444 1.4e-10 68.9 53 64.2
Gohir.D12G031701 Gossypium hirsutum HOM05D004818 ORTHO05D005444 1.4e-10 68.9 46 76.1
BcaC05g30492 Brassica carinata HOM05D004818 ORTHO05D005444 1.9e-10 68.6 53 64.2
MELO3C003769.2 Cucumis melo HOM05D004818 ORTHO05D005444 1.9e-10 68.6 53 66.0
Thhalv10021899m.g Eutrema salsugineum HOM05D004818 ORTHO05D005444 3.2e-10 67.8 53 64.2
BolC5t35118H Brassica oleracea HOM05D004818 ORTHO05D005444 5.5e-10 67.0 53 62.3
BraA03t12437Z Brassica rapa HOM05D004818 ORTHO05D005444 5.5e-10 67.0 52 65.4
Duzib132G0136 Durio zibethinus HOM05D004818 ORTHO05D005444 5.5e-10 67.0 57 64.9
SalBow3G2817 Salvia bowleyana HOM05D004818 ORTHO05D005444 7.2e-10 66.6 48 68.8
Hund06293 Selenicereus undatus HOM05D004818 ORTHO05D005444 7.2e-10 66.6 49 71.4
THA.LOC104805479 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 7.2e-10 66.6 53 64.2
Aqoxy5G01447 Aquilegia oxysepala HOM05D004818 ORTHO05D005444 1.2e-09 65.9 50 70.0
FAN15G2220 Fragaria x ananassa HOM05D012912 ORTHO05D005444 1.2e-09 65.9 42 78.6
CARHR075920 Cardamine hirsuta HOM05D004818 ORTHO05D005444 1.6e-09 65.5 49 67.3
AL6G26200 Arabidopsis lyrata HOM05D004818 ORTHO05D005444 2.1e-09 65.1 53 60.4
A03p07110 Brassica napus HOM05D004818 ORTHO05D005444 4.7e-09 63.9 53 64.2
BraA03t10033Z Brassica rapa HOM05D004818 ORTHO05D005444 4.7e-09 63.9 53 64.2
PSO541G2816 Papaver somniferum HOM05D004818 ORTHO05D005444 4.7e-09 63.9 53 64.2
C03p08100 Brassica napus HOM05D004818 ORTHO05D005444 6.1e-09 63.5 53 64.2
C09p75420 Brassica napus HOM05D004818 ORTHO05D005444 6.1e-09 63.5 57 59.6
BolC3t13307H Brassica oleracea HOM05D004818 ORTHO05D005444 6.1e-09 63.5 53 64.2
CDE02G1235 Ceratophyllum demersum HOM05D004818 ORTHO05D005444 6.1e-09 63.5 49 65.3
Nn5g29275 Nelumbo nucifera HOM05D004818 ORTHO05D005444 6.1e-09 63.5 53 60.4
CsaV3_3G045680 Cucumis sativus L. HOM05D004818 ORTHO05D005444 7.9e-09 63.2 52 67.3
Oeu020676.1 Olea europaea HOM05D004818 ORTHO05D005444 7.9e-09 63.2 39 79.5
FvH4_2g40200 Fragaria vesca HOM05D004818 ORTHO05D005444 1.4e-08 62.4 42 76.2
arahy.Tifrunner.gnm1.ann1.LS9ND1 Arachis hypogaea HOM05D004818 ORTHO05D005444 2.3e-08 61.6 35 88.6
FvH4_2g40204 Fragaria vesca HOM05D004818 ORTHO05D005444 2.3e-08 61.6 42 76.2
Hund00181 Selenicereus undatus HOM05D004818 ORTHO05D005444 5.1e-08 60.5 49 65.3
Hma1.2p1_0066F.1_g035670 Hydrangea macrophylla HOM05D004818 ORTHO05D005444 1.5e-07 58.9 48 58.3
PGR042G0239 Punica granatum HOM05D004818 ORTHO05D005444 1.5e-07 58.9 40 75.0
Rhsim11G0184800 Rhododendron simsii HOM05D004818 ORTHO05D005444 1.5e-07 58.9 43 74.4
Nn6g32305 Nelumbo nucifera HOM05D004818 ORTHO05D005444 2.0e-07 58.5 35 80.0
Sc18g0005450 Simmondsia chinensis HOM05D004818 ORTHO05D005444 2.0e-07 58.5 41 68.3
Ah.01g018640 Amaranthus hybridus HOM05D004284 ORTHO05D006610 2.6e-07 58.2 46 65.2
ClCG02G004430 Citrullus lanatus HOM05D004818 ORTHO05D005444 3.3e-07 57.8 35 82.9
SMO358G0321 Selaginella moellendorffii HOM05D004818 ORTHO05D005444 3.3e-07 57.8 54 59.3
vmacro17409 Vaccinium macrocarpon HOM05D004818 ORTHO05D005444 3.3e-07 57.8 39 74.4
Zm00001eb425810 Zea mays HOM05D004818 ORTHO05D005444 3.3e-07 57.8 49 63.3
BcaB08g36904 Brassica carinata HOM05D004818 ORTHO05D005444 4.4e-07 57.4 53 62.3
CARHR197990 Cardamine hirsuta HOM05D004818 ORTHO05D005444 4.4e-07 57.4 53 56.6
CSS0030409 Camellia sinensis var. sinensis HOM05D004818 ORTHO05D005444 7.4e-07 56.6 35 80.0
Manes.11G092164 Manihot esculenta HOM05D004818 ORTHO05D005444 9.7e-07 56.2 44 65.9
Peaxi162Scf00362g01160 Petunia axillaris HOM05D004818 ORTHO05D005444 9.7e-07 56.2 38 76.3
Rhsim05G0067400 Rhododendron simsii HOM05D004818 ORTHO05D005444 9.7e-07 56.2 35 80.0
BcaC01g04504 Brassica carinata HOM05D004818 ORTHO05D005444 1.3e-06 55.8 42 64.3
Zm00001eb078460 Zea mays HOM05D004818 ORTHO05D005444 1.3e-06 55.8 49 63.3
AT3G01130 Arabidopsis thaliana HOM05D004818 ORTHO05D005444 1.7e-06 55.5 35 80.0
BcaB08g36903 Brassica carinata HOM05D004818 ORTHO05D005444 1.7e-06 55.5 53 62.3
BcaC04g18956 Brassica carinata HOM05D004818 ORTHO05D005444 1.7e-06 55.5 53 62.3
C09p61780 Brassica napus HOM05D004818 ORTHO05D005444 1.7e-06 55.5 53 62.3
BolC9t59016H Brassica oleracea HOM05D004818 ORTHO05D005444 1.7e-06 55.5 53 62.3
Cc09_g06640 Coffea canephora HOM05D000190 ORTHO05D005444 1.7e-06 55.5 35 77.1
A10p23550 Brassica napus HOM05D004818 ORTHO05D005444 2.2e-06 55.1 53 60.4
BraA10t44421Z Brassica rapa HOM05D004818 ORTHO05D005444 2.2e-06 55.1 53 60.4
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 2.2e-06 55.1 52 53.8
CSS0029185 Camellia sinensis var. sinensis HOM05D004818 ORTHO05D005444 2.8e-06 54.7 35 77.1
Nitab4.5_0002096g0010 Nicotiana tabacum HOM05D004818 ORTHO05D005444 2.8e-06 54.7 36 75.0
Peaxi162Scf00538g00229 Petunia axillaris HOM05D004818 ORTHO05D005444 3.7e-06 54.3 49 63.3
FAN20G1549 Fragaria x ananassa HOM05D004818 ORTHO05D005444 6.3e-06 53.5 76 44.7


User provided reference genes

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