Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 7.1e-63 243.8 127 100.0
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 7.8e-62 240.4 127 98.4
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 4.7e-59 231.1 126 92.9
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 6.8e-58 227.3 126 89.7
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 6.8e-58 227.3 126 89.7
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 1.5e-57 226.1 126 89.7
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 4.4e-57 224.6 126 88.1
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 7.6e-57 223.8 126 88.9
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 7.6e-57 223.8 126 88.9
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 9.9e-57 223.4 125 89.6
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 2.9e-56 221.9 126 89.7
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 3.8e-56 221.5 127 89.0
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 2.4e-55 218.8 126 88.1
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 3.2e-55 218.4 126 85.7
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 4.1e-55 218.0 126 84.9
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 4.1e-55 218.0 126 88.9
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 5.4e-55 217.6 124 87.9
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 5.4e-55 217.6 126 86.5
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 7.1e-55 217.2 126 87.3
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 7.1e-55 217.2 126 85.7
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 1.2e-54 216.5 128 85.9
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 1.2e-54 216.5 126 86.5
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 1.2e-54 216.5 126 88.1
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 2.7e-54 215.3 120 89.2
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 2.7e-54 215.3 125 85.6
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 3.5e-54 214.9 127 83.5
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 6.0e-54 214.2 125 85.6
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 7.8e-54 213.8 121 87.6
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 1.0e-53 213.4 125 84.0
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 1.0e-53 213.4 125 82.4
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 1.0e-53 213.4 123 86.2
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 1.0e-53 213.4 123 86.2
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 1.3e-53 213.0 125 84.8
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.3e-53 213.0 126 84.1
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 1.7e-53 212.6 126 84.1
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.7e-53 212.6 126 83.3
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.3e-53 212.2 126 83.3
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 5.1e-53 211.1 126 84.1
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 8.7e-53 210.3 125 84.8
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 1.5e-52 209.5 126 82.5
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 2.5e-52 208.8 127 81.1
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 3.3e-52 208.4 119 86.6
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 5.6e-52 207.6 126 83.3
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 5.6e-52 207.6 119 83.2
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 9.6e-52 206.8 126 81.7
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 1.2e-51 206.5 126 81.7
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 1.2e-51 206.5 118 86.4
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 1.6e-51 206.1 120 84.2
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 1.6e-51 206.1 121 86.0
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 2.1e-51 205.7 120 84.2
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 2.8e-51 205.3 124 80.6
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 4.7e-51 204.5 124 79.8
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 8.1e-51 203.8 124 79.8
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 8.1e-51 203.8 123 83.7
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 1.1e-50 203.4 117 83.8
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 1.1e-50 203.4 117 83.8
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 1.1e-50 203.4 117 83.8
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 1.4e-50 203.0 117 82.9
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 1.4e-50 203.0 117 82.9
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 2.4e-50 202.2 126 77.0
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 5.2e-50 201.1 119 81.5
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 9.0e-50 200.3 116 83.6
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 9.0e-50 200.3 117 82.1
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 9.0e-50 200.3 119 81.5
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 1.2e-49 199.9 123 80.5
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 2.6e-49 198.7 120 79.2
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 2.6e-49 198.7 114 85.1
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 2.6e-49 198.7 126 79.4
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 2.6e-49 198.7 123 78.9
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 3.4e-49 198.4 116 81.9
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 4.4e-49 198.0 126 78.6
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 4.4e-49 198.0 127 78.0
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 5.8e-49 197.6 118 80.5
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 5.8e-49 197.6 124 80.6
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 1.3e-48 196.4 110 89.1
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 2.2e-48 195.7 123 78.9
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 2.2e-48 195.7 124 80.6
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 2.9e-48 195.3 123 78.0
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 4.9e-48 194.5 119 77.3
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 4.9e-48 194.5 119 77.3
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 4.9e-48 194.5 121 77.7
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 6.4e-48 194.1 123 78.0
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 6.4e-48 194.1 122 77.0
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 8.4e-48 193.7 122 77.0
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 1.9e-47 192.6 127 78.0
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 3.2e-47 191.8 125 78.4
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 4.2e-47 191.4 105 89.5
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 4.2e-47 191.4 121 76.0
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 7.1e-47 190.7 117 78.6
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 9.3e-47 190.3 119 75.6
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 9.3e-47 190.3 108 85.2
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 1.6e-46 189.5 121 74.4
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 2.1e-46 189.1 123 71.5
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 2.7e-46 188.7 125 76.8
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 3.5e-46 188.3 121 76.9
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 7.8e-46 187.2 123 74.8
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 1.0e-45 186.8 108 86.1
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.3e-45 186.4 122 76.2
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 3.0e-45 185.3 123 74.8
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 1.5e-44 183.0 117 74.4
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 4.3e-44 181.4 121 76.0
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 4.0e-42 174.9 98 88.8
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 5.3e-42 174.5 117 75.2
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 6.9e-42 174.1 119 71.4
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 9.0e-42 173.7 110 80.0
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 1.5e-41 172.9 104 77.9
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.5e-41 172.9 99 87.9
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 1.5e-41 172.9 98 86.7
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 2.6e-41 172.2 98 87.8
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 4.5e-41 171.4 125 66.4
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 2.9e-40 168.7 100 81.0
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 1.4e-39 166.4 119 71.4
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 3.2e-39 165.2 122 68.0
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 7.1e-39 164.1 90 86.7
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 7.1e-39 164.1 124 68.5
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 1.2e-38 163.3 121 69.4
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 4.6e-38 161.4 121 66.9
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 1.3e-37 159.8 98 80.6
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 1.3e-37 159.8 98 80.6
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 1.1e-36 156.8 95 81.1
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 1.6e-35 152.9 108 68.5
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 2.8e-35 152.1 120 69.2
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 2.8e-35 152.1 121 63.6
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 3.7e-35 151.8 129 64.3
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.4e-34 149.8 86 86.0
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 1.8e-34 149.4 123 64.2
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 2.6e-33 145.6 106 67.0
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 4.5e-33 144.8 83 81.9
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 5.8e-33 144.4 126 64.3
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 7.6e-33 144.1 85 80.0
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 1.7e-32 142.9 99 70.7
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 1.7e-32 142.9 86 80.2
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 8.4e-32 140.6 122 56.6
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 3.5e-30 135.2 102 69.6
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 5.1e-29 131.3 108 62.0
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 1.3e-27 126.7 88 63.6
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 2.1e-27 125.9 114 51.8
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 2.8e-27 125.6 85 75.3
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 6.2e-27 124.4 121 50.4
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 6.2e-27 124.4 114 57.9
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 6.2e-27 124.4 115 52.2
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 4.0e-26 121.7 113 51.3
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 5.3e-26 121.3 118 49.2
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 9.0e-26 120.6 122 55.7
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 2.0e-25 119.4 116 54.3
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 7.6e-25 117.5 123 48.0
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 1.0e-24 117.1 115 48.7
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 8.4e-24 114.0 118 51.7
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 2.5e-23 112.5 110 51.8
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 2.1e-22 109.4 129 46.5
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 3.5e-22 108.6 76 77.6
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 4.6e-22 108.2 132 47.0
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 6.0e-22 107.8 62 80.6
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 1.5e-20 103.2 61 83.6
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 6.9e-10 67.8 60 50.0
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 2.6e-09 65.9 75 48.0
Nn7g38187 Nelumbo nucifera HOM05D004760 ORTHO05D006114 3.4e-09 65.5 35 82.9
Lalb_Chr18g0045811 Lupinus albus HOM05D004009 ORTHO05D004617 3.6e-06 55.5 111 34.2


User provided reference genes

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