Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr10.660 Acer truncatum HOM05D004415 ORTHO05D005198 8.2e-163 577.0 296 100.0
Ciclev10016110m.g Citrus clementina HOM05D004415 ORTHO05D005198 4.7e-134 481.5 297 82.2
Hma1.2p1_0008F-2.1_g005810 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 9.8e-132 473.8 298 80.2
Dinv03287 Davidia involucrata HOM05D004415 ORTHO05D005198 2.2e-131 472.6 301 79.1
TAR627G0414 Trochodendron aralioides HOM05D004415 ORTHO05D005198 8.3e-131 470.7 298 78.9
TAR627G1150 Trochodendron aralioides HOM05D004415 ORTHO05D005198 8.3e-131 470.7 298 78.9
PGR083G0443 Punica granatum HOM05D004415 ORTHO05D005198 3.1e-130 468.8 298 79.9
GSVIVG01037942001 Vitis vinifera HOM05D004415 ORTHO05D005198 4.1e-130 468.4 295 80.3
Gohir.A06G202400 Gossypium hirsutum HOM05D004415 ORTHO05D005198 7.0e-130 467.6 297 79.5
Potri.001G440600 Populus trichocarpa HOM05D004415 ORTHO05D005198 1.2e-129 466.8 297 79.8
Gorai.010G247000 Gossypium raimondii HOM05D004415 ORTHO05D005198 1.6e-129 466.5 297 79.5
Duzib235G0717 Durio zibethinus HOM05D004415 ORTHO05D005198 2.7e-129 465.7 297 79.1
Actinidia29247 Actinidia chinensis HOM05D004415 ORTHO05D005198 3.5e-129 465.3 296 79.4
Thecc.06G005600 Theobroma cacao HOM05D004415 ORTHO05D005198 3.5e-129 465.3 296 79.1
FvH4_3g11520 Fragaria vesca HOM05D004415 ORTHO05D005198 1.3e-128 463.4 297 77.1
Potri.011G155200 Populus trichocarpa HOM05D004415 ORTHO05D005198 1.3e-128 463.4 297 79.5
Manes.16G062800 Manihot esculenta HOM05D004415 ORTHO05D005198 1.7e-128 463.0 296 79.7
Cfa000755 Carpinus fangiana HOM05D004415 ORTHO05D005198 2.3e-128 462.6 297 79.5
RcHm_v2.0_Chr5g0018471 Rosa chinensis HOM05D004415 ORTHO05D005198 3.8e-128 461.8 297 76.4
TWI38G1449 Tripterygium wilfordii HOM05D004415 ORTHO05D005198 8.6e-128 460.7 297 78.8
CSS0002194 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 1.1e-127 460.3 297 78.1
vmacro03476 Vaccinium macrocarpon HOM05D004415 ORTHO05D005198 1.5e-127 459.9 296 78.7
CiPaw.09G149000 Carya illinoinensis HOM05D004415 ORTHO05D005198 2.5e-127 459.1 296 78.0
Nn7g37839 Nelumbo nucifera HOM05D004415 ORTHO05D005198 2.5e-127 459.1 297 76.4
Sc17g0004090 Simmondsia chinensis HOM05D004415 ORTHO05D005198 2.5e-127 459.1 297 77.4
Cpa.g.sc173.46 Carica papaya HOM05D004415 ORTHO05D005198 7.3e-127 457.6 293 79.5
Ca_02386_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 9.5e-127 457.2 297 78.1
Phvul.009G218500 Phaseolus vulgaris HOM05D004415 ORTHO05D005198 9.5e-127 457.2 298 76.8
Rhsim13G0126400 Rhododendron simsii HOM05D004415 ORTHO05D005198 9.5e-127 457.2 296 78.4
Oeu063146.1 Olea europaea HOM05D004415 ORTHO05D005198 2.1e-126 456.1 296 77.4
Sabra16G0300000 Salix brachista HOM05D004415 ORTHO05D005198 3.6e-126 455.3 302 77.8
Lalb_Chr11g0073471 Lupinus albus HOM05D004415 ORTHO05D005198 4.7e-126 454.9 297 78.1
CSS0048897 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 6.1e-126 454.5 297 76.8
Lj1A1155G52 Lonicera japonica HOM05D004415 ORTHO05D005198 6.1e-126 454.5 296 76.7
SalBow8G0313 Salvia bowleyana HOM05D004415 ORTHO05D005198 6.1e-126 454.5 293 76.1
SalBow8G4844 Salvia bowleyana HOM05D004415 ORTHO05D005198 6.1e-126 454.5 293 76.1
CANSAT35G0835 Cannabis sativa HOM05D004415 ORTHO05D005198 8.0e-126 454.1 296 78.0
Sabra16G0298000 Salix brachista HOM05D004415 ORTHO05D005198 8.0e-126 454.1 302 77.8
ClCG01G008890 Citrullus lanatus HOM05D004415 ORTHO05D005198 2.3e-125 452.6 297 77.4
Sopen02g018770 Solanum pennellii HOM05D004415 ORTHO05D005198 3.0e-125 452.2 295 76.6
FAN16G2189 Fragaria x ananassa HOM05D004415 ORTHO05D005198 4.0e-125 451.8 315 72.7
Solyc02g069640.3 Solanum lycopersicum HOM05D004415 ORTHO05D005198 4.0e-125 451.8 295 76.3
PGSC0003DMG400021134 Solanum tuberosum HOM05D004415 ORTHO05D005198 4.0e-125 451.8 295 76.3
VMungo1309G0873 Vigna mungo HOM05D004415 ORTHO05D005198 4.0e-125 451.8 296 76.4
Aqoxy4G00050 Aquilegia oxysepala HOM05D004415 ORTHO05D005198 5.2e-125 451.4 292 77.1
CsaV3_1G037760 Cucumis sativus L. HOM05D004415 ORTHO05D005198 5.2e-125 451.4 297 77.1
COL.COLO4_22898 Corchorus olitorius HOM05D004415 ORTHO05D005198 8.9e-125 450.7 296 77.4
FAN21G2450 Fragaria x ananassa HOM05D004415 ORTHO05D005198 1.2e-124 450.3 315 72.1
MD00G1097300 Malus domestica HOM05D004415 ORTHO05D005198 1.5e-124 449.9 297 75.8
Peaxi162Scf00195g00616 Petunia axillaris HOM05D004415 ORTHO05D005198 1.5e-124 449.9 295 76.9
FAN25G0769 Fragaria x ananassa HOM05D004415 ORTHO05D005198 5.7e-124 448.0 314 71.0
CSS0010489 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 9.8e-124 447.2 282 79.1
arahy.Tifrunner.gnm1.ann1.ZSFV9B Arachis hypogaea HOM05D004415 ORTHO05D005198 1.7e-123 446.4 297 75.4
MSTRG.7566 Avicennia marina HOM05D004415 ORTHO05D005198 2.9e-123 445.7 296 75.0
Medtr2g047110 Medicago truncatula HOM05D004415 ORTHO05D005198 3.7e-123 445.3 297 75.8
Prupe.4G102500 Prunus persica HOM05D004415 ORTHO05D005198 3.7e-123 445.3 296 76.4
Migut.M01938 Erythranthe guttata HOM05D004415 ORTHO05D005198 8.3e-123 444.1 297 74.4
QL05p063115 Quercus lobata HOM05D004415 ORTHO05D005198 8.3e-123 444.1 341 69.8
arahy.Tifrunner.gnm1.ann1.UW0JAL Arachis hypogaea HOM05D004415 ORTHO05D005198 1.4e-122 443.4 297 75.4
unitig_37.g12064 Utricularia gibba HOM05D004415 ORTHO05D005198 3.2e-122 442.2 297 76.4
ATR1098G142 Amborella trichopoda HOM05D004415 ORTHO05D005198 4.1e-122 441.8 290 74.1
Ah.01g002800 Amaranthus hybridus HOM05D004415 ORTHO05D005198 7.0e-122 441.0 295 75.3
CDE06G2804 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 1.2e-121 440.3 297 74.4
Hund01093 Selenicereus undatus HOM05D004415 ORTHO05D005198 1.2e-121 440.3 297 75.8
CDE03G0179 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 1.6e-121 439.9 297 74.1
Nitab4.5_0007613g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 2.0e-121 439.5 295 75.9
Sed0021762 Sechium edule HOM05D004415 ORTHO05D005198 2.0e-121 439.5 298 76.2
MSTRG.16315 Avicennia marina HOM05D004415 ORTHO05D005198 2.7e-121 439.1 297 73.7
Sp7g18770 Schrenkiella parvula HOM05D004415 ORTHO05D005198 3.5e-121 438.7 293 74.7
Nitab4.5_0010415g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 4.6e-121 438.3 295 75.6
Thhalv10025893m.g Eutrema salsugineum HOM05D004415 ORTHO05D005198 2.3e-120 436.0 293 74.4
THA.LOC104812930 Tarenaya hassleriana HOM05D004415 ORTHO05D005198 2.3e-120 436.0 293 74.1
Carub.0007s2075 Capsella rubella HOM05D004415 ORTHO05D005198 5.0e-120 434.9 293 73.7
Lalb_Chr08g0233111 Lupinus albus HOM05D004415 ORTHO05D005198 6.6e-120 434.5 297 73.4
AT4G20410 Arabidopsis thaliana HOM05D004415 ORTHO05D005198 8.6e-120 434.1 293 73.4
Glyma.15G191200 Glycine max HOM05D004415 ORTHO05D005198 8.6e-120 434.1 297 74.4
AL7G33480 Arabidopsis lyrata HOM05D004415 ORTHO05D005198 1.1e-119 433.7 293 73.7
A01p12100 Brassica napus HOM05D004415 ORTHO05D005198 1.1e-119 433.7 293 74.4
Sabra11G0144600 Salix brachista HOM05D004415 ORTHO05D005198 2.5e-119 432.6 295 74.9
CARHR227240 Cardamine hirsuta HOM05D004415 ORTHO05D005198 5.6e-119 431.4 293 74.4
C01p14410 Brassica napus HOM05D004415 ORTHO05D005198 7.3e-119 431.0 293 73.7
BolC1t01398H Brassica oleracea HOM05D004415 ORTHO05D005198 7.3e-119 431.0 293 73.7
Glyma.09G083100 Glycine max HOM05D004415 ORTHO05D005198 9.5e-119 430.6 296 74.0
TPR.G22904 Trifolium pratense HOM05D004415 ORTHO05D005198 1.2e-118 430.3 292 74.7
BraA01t01153Z Brassica rapa HOM05D004415 ORTHO05D005198 1.6e-118 429.9 293 74.1
EL10Ac9g22486 Beta vulgaris HOM05D004415 ORTHO05D005198 6.2e-118 427.9 289 73.4
Ca_17811_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 1.0e-117 427.2 299 73.2
Psat1g018760 Pisum sativum HOM05D004415 ORTHO05D005198 1.0e-117 427.2 297 73.1
Gorai.009G116300 Gossypium raimondii HOM05D004415 ORTHO05D005198 2.3e-117 426.0 295 73.2
PSO675G6508 Papaver somniferum HOM05D004415 ORTHO05D005198 2.3e-117 426.0 298 73.8
PSO541G2694 Papaver somniferum HOM05D004415 ORTHO05D005198 5.2e-117 424.9 298 73.8
HPP92_013188 Vanilla planifolia HOM05D004415 ORTHO05D005198 8.9e-117 424.1 296 71.6
Eucgr.D01029 Eucalyptus grandis HOM05D004415 ORTHO05D005198 2.0e-116 422.9 262 80.2
SGA_v2.0_scaffold298G47634 Striga asiatica HOM05D004415 ORTHO05D005198 2.0e-116 422.9 297 70.7
CAN.G954.7 Capsicum annuum HOM05D004415 ORTHO05D005198 2.6e-116 422.5 281 75.8
AUR62025006 Chenopodium quinoa HOM05D004415 ORTHO05D005198 3.4e-116 422.2 297 73.4
Lalb_Chr07g0185681 Lupinus albus HOM05D004415 ORTHO05D005198 9.8e-116 420.6 282 75.2
AUR62006530 Chenopodium quinoa HOM05D004415 ORTHO05D005198 2.9e-115 419.1 297 72.7
arahy.Tifrunner.gnm1.ann1.5MZ6ZS Arachis hypogaea HOM05D004415 ORTHO05D005198 3.7e-115 418.7 297 72.1
arahy.Tifrunner.gnm1.ann1.Z0R64B Arachis hypogaea HOM05D004415 ORTHO05D005198 3.7e-115 418.7 297 72.1
Medtr8g089250 Medicago truncatula HOM05D004415 ORTHO05D005198 8.3e-115 417.5 297 70.7
ECA236G1935 Erigeron canadensis HOM05D004415 ORTHO05D005198 1.1e-114 417.2 296 69.3
Sed0009944 Sechium edule HOM05D004415 ORTHO05D005198 1.4e-114 416.8 277 77.3
Aa31LG6G2800 Aethionema arabicum HOM05D004415 ORTHO05D005198 7.0e-114 414.5 293 72.0
TPR.G6264 Trifolium pratense HOM05D004415 ORTHO05D005198 1.6e-113 413.3 298 71.5
Gohir.D06G219300 Gossypium hirsutum HOM05D004415 ORTHO05D005198 6.0e-113 411.4 250 81.6
Os04g0618500 Oryza sativa ssp. japonica HOM05D004415 ORTHO05D005198 1.3e-112 410.2 296 69.3
Lsat_1_v5_gn_7_31101 Lactuca sativa HOM05D004415 ORTHO05D005198 3.2e-106 389.0 296 65.9
Gohir.D05G112100 Gossypium hirsutum HOM05D004415 ORTHO05D005198 3.0e-104 382.5 320 64.1
Haze_05963 Corylus avellana HOM05D004415 ORTHO05D005198 1.2e-102 377.1 297 68.4
AagrBONN_evm.TU.Sc2ySwM_368.1346 Anthoceros agrestis HOM05D004415 ORTHO05D005198 4.1e-98 362.1 293 59.0
Hma1.2p1_0008F-2.1_g005800 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 9.2e-98 360.9 219 80.4
Lj6g0004921 Lotus japonicus HOM05D004415 ORTHO05D005198 1.3e-91 340.5 296 60.1
Cc09_g04060 Coffea canephora HOM05D004415 ORTHO05D005198 1.4e-90 337.0 222 77.0
Mapoly0008s0129 Marchantia polymorpha HOM05D004415 ORTHO05D005198 2.4e-90 336.3 291 57.4
Pp3c19_23300 Physcomitrium patens HOM05D004415 ORTHO05D005198 4.6e-89 332.0 289 57.4
Zm00001eb431060 Zea mays HOM05D004415 ORTHO05D005198 6.6e-88 328.2 219 74.9
MELO3C021810.2 Cucumis melo HOM05D004415 ORTHO05D005198 1.5e-87 327.0 223 74.9
arahy.Tifrunner.gnm1.ann1.QWIY8B Arachis hypogaea HOM05D004415 ORTHO05D005198 2.5e-87 326.2 279 63.8
AagrBONN_evm.TU.Sc2ySwM_362.579 Anthoceros agrestis HOM05D004415 ORTHO05D005198 1.3e-86 323.9 291 56.7
HanXRQChr04g0119541 Helianthus annuus HOM05D004415 ORTHO05D005198 1.6e-86 323.6 222 72.1
AagrBONN_evm.TU.Sc2ySwM_368.3355 Anthoceros agrestis HOM05D004415 ORTHO05D005198 6.2e-86 321.6 273 58.2
SMO228G0081 Selaginella moellendorffii HOM05D004415 ORTHO05D005198 6.9e-85 318.2 262 58.8
CBR_g24190 Chara braunii HOM05D004415 ORTHO05D005198 4.6e-81 305.4 305 54.4
CDE03G0221 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 6.0e-81 305.1 278 59.4
Zm00001eb410240 Zea mays HOM05D004415 ORTHO05D005198 7.4e-79 298.1 220 67.7
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 1.5e-71 273.9 252 60.7
Duzib043G0003 Durio zibethinus HOM05D004415 ORTHO05D005198 1.6e-70 270.4 176 76.7
CBR_g48904 Chara braunii HOM05D004415 ORTHO05D005198 4.5e-68 262.3 258 53.1
arahy.Tifrunner.gnm1.ann1.6K3MVX Arachis hypogaea HOM05D004415 ORTHO05D005198 8.7e-64 248.1 177 72.3
MBI02_g43828_MAGBIO Magnolia biondii HOM05D004415 ORTHO05D005198 4.1e-61 239.2 150 79.3
Gohir.A05G111501 Gossypium hirsutum HOM05D004415 ORTHO05D005198 1.7e-59 233.8 202 63.4
SEGI_29507 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 1.6e-54 217.2 160 65.6
arahy.Tifrunner.gnm1.ann1.W2C20P Arachis hypogaea HOM05D004415 ORTHO05D005198 2.8e-54 216.5 149 73.2
TAR627G0753 Trochodendron aralioides HOM05D004415 ORTHO05D005198 3.7e-54 216.1 135 78.5
Zm00001eb072080 Zea mays HOM05D004415 ORTHO05D005198 6.9e-53 211.8 143 69.2
MCO11G422 Micromonas commoda HOM05D004415 ORTHO05D005198 5.3e-45 185.7 266 38.3
Oeu063144.1 Olea europaea HOM05D004415 ORTHO05D005198 7.2e-42 175.3 181 54.1
arahy.Tifrunner.gnm1.ann1.NJ63RV Arachis hypogaea HOM05D004415 ORTHO05D005198 8.8e-40 168.3 135 65.2
VMungo0464G1344 Vigna mungo HOM05D004415 ORTHO05D005198 8.2e-38 161.8 105 74.3
SEGI_22365 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 4.5e-36 156.0 106 74.5
PRCOL_00005341 Prasinoderma coloniale HOM05D004415 ORTHO05D005198 6.5e-35 152.1 302 34.4
Zm00001eb266710 Zea mays HOM05D004415 ORTHO05D005198 1.7e-30 137.5 99 64.6
arahy.Tifrunner.gnm1.ann1.YAAB6X Arachis hypogaea HOM05D004415 ORTHO05D005198 3.1e-29 133.3 132 57.6
FvH4_3g11480 Fragaria vesca HOM05D004415 ORTHO05D005198 5.7e-23 112.5 81 70.4
Cc09_g04070 Coffea canephora HOM05D004415 ORTHO05D005198 3.7e-22 109.8 64 85.9
SGA_v2.0_scaffold298G47629 Striga asiatica HOM05D004415 ORTHO05D005198 1.6e-20 104.4 128 49.2
Cre08.g385700 Chlamydomonas reinhardtii HOM05D004415 ORTHO05D005198 2.7e-20 103.6 267 25.5
arahy.Tifrunner.gnm1.ann1.479FYN Arachis hypogaea HOM05D004415 ORTHO05D005198 3.5e-20 103.2 115 53.9
arahy.Tifrunner.gnm1.ann1.LII2ER Arachis hypogaea HOM05D004415 ORTHO05D005198 1.3e-14 84.7 103 49.5
arahy.Tifrunner.gnm1.ann1.8SCZ96 Arachis hypogaea HOM05D004415 ORTHO05D005198 4.9e-14 82.8 103 48.5
BcaB03g15995 Brassica carinata HOM05D004415 ORTHO05D005198 3.1e-13 80.1 106 46.2
SGA_v2.0_scaffold298G47630 Striga asiatica HOM05D004415 ORTHO05D005198 4.0e-08 63.2 68 50.0
HanXRQChr04g0119531 Helianthus annuus HOM05D004415 ORTHO05D005198 2.0e-07 60.8 38 71.1
GSVIVG01003362001 Vitis vinifera HOM05D004415 ORTHO05D005198 5.7e-07 59.3 54 57.4
GSVIVG01005645001 Vitis vinifera HOM05D004415 ORTHO05D005198 2.9e-06 57.0 54 55.6
GSVIVG01032305001 Vitis vinifera HOM05D004415 ORTHO05D005198 2.9e-06 57.0 54 55.6
VMungo0331G0484 Vigna mungo HOM05D003730 ORTHO05D005198 6.4e-06 55.8 43 62.8


User provided reference genes

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