Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr10.639 Acer truncatum HOM05D003316 ORTHO05D003690 3.2e-96 355.1 184 100.0
Ciclev10016512m.g Citrus clementina HOM05D003316 ORTHO05D003690 3.1e-27 125.9 191 48.7
Thecc.06G134000 Theobroma cacao HOM05D003316 ORTHO05D003690 1.5e-26 123.6 202 44.6
Duzib192G0114 Durio zibethinus HOM05D003316 ORTHO05D003690 1.1e-24 117.5 203 43.8
Duzib235G1001 Durio zibethinus HOM05D003316 ORTHO05D003690 1.2e-23 114.0 201 41.8
Duzib160G0233 Durio zibethinus HOM05D003316 ORTHO05D003690 3.6e-23 112.5 201 43.3
Potri.001G446800 Populus trichocarpa HOM05D003316 ORTHO05D003690 7.9e-23 111.3 204 42.6
Dinv19599 Davidia involucrata HOM05D003316 ORTHO05D003690 1.8e-22 110.2 221 38.0
Potri.011G153600 Populus trichocarpa HOM05D003316 ORTHO05D003690 1.8e-22 110.2 202 39.1
Gohir.A10G048700 Gossypium hirsutum HOM05D003316 ORTHO05D003690 7.4e-21 104.8 221 38.0
Sabra11G0146100 Salix brachista HOM05D003316 ORTHO05D003690 9.7e-21 104.4 197 41.6
COL.COLO4_30905 Corchorus olitorius HOM05D003316 ORTHO05D003690 1.3e-20 104.0 213 39.4
Solyc07g066570.4 Solanum lycopersicum HOM05D003316 ORTHO05D003690 3.7e-20 102.4 179 40.8
Sabra16G0301800 Salix brachista HOM05D003316 ORTHO05D003690 4.8e-20 102.1 209 40.2
Gohir.D10G049400 Gossypium hirsutum HOM05D003316 ORTHO05D003690 8.2e-20 101.3 224 37.1
Sopen07g034730 Solanum pennellii HOM05D003316 ORTHO05D003690 1.4e-19 100.5 179 40.2
DCAR_013730 Daucus carota HOM05D003316 ORTHO05D003690 2.4e-19 99.8 131 49.6
Gorai.011G052900 Gossypium raimondii HOM05D003316 ORTHO05D003690 5.3e-19 98.6 224 36.2
Dinv42487 Davidia involucrata HOM05D003316 ORTHO05D003690 1.5e-18 97.1 225 36.4
ATR0763G052 Amborella trichopoda HOM05D003316 ORTHO05D003690 2.0e-18 96.7 204 36.8
Actinidia35424 Actinidia chinensis HOM05D003316 ORTHO05D003690 2.6e-18 96.3 218 34.4
Cpa.g.sc136.61 Carica papaya HOM05D003316 ORTHO05D003690 2.6e-18 96.3 123 52.8
Hma1.2p1_0151F.1_g067420 Hydrangea macrophylla HOM05D003316 ORTHO05D003690 2.6e-18 96.3 210 38.6
GSVIVG01038001001 Vitis vinifera HOM05D003316 ORTHO05D003690 4.5e-18 95.5 216 36.6
Actinidia07371 Actinidia chinensis HOM05D003316 ORTHO05D003690 7.7e-18 94.7 208 38.9
GSVIVG01036804001 Vitis vinifera HOM05D003316 ORTHO05D003690 1.0e-17 94.4 201 38.3
MSTRG.7073 Avicennia marina HOM05D003316 ORTHO05D003690 2.2e-17 93.2 221 36.2
TWI38G0778 Tripterygium wilfordii HOM05D003316 ORTHO05D003690 2.9e-17 92.8 209 38.8
SalBow8G1536 Salvia bowleyana HOM05D003316 ORTHO05D003690 5.0e-17 92.0 139 48.9
CDE02G3419 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 6.5e-17 91.7 210 37.1
CSS0004609 Camellia sinensis var. sinensis HOM05D003316 ORTHO05D003690 1.1e-16 90.9 140 47.1
CSS0025565 Camellia sinensis var. sinensis HOM05D003316 ORTHO05D003690 1.1e-16 90.9 134 47.8
Lj1A910T5 Lonicera japonica HOM05D003316 ORTHO05D003690 1.1e-16 90.9 223 36.8
Nitab4.5_0000747g0040 Nicotiana tabacum HOM05D003316 ORTHO05D003690 5.5e-16 88.6 210 37.1
Nitab4.5_0003929g0010 Nicotiana tabacum HOM05D003316 ORTHO05D003690 5.5e-16 88.6 220 37.3
Rhsim06G0241400 Rhododendron simsii HOM05D003316 ORTHO05D003690 5.5e-16 88.6 229 33.6
DCAR_016833 Daucus carota HOM05D003316 ORTHO05D003690 9.4e-16 87.8 221 33.9
Lalb_Chr01g0007091 Lupinus albus HOM05D003316 ORTHO05D003690 9.4e-16 87.8 234 35.9
TAR627G0616 Trochodendron aralioides HOM05D003316 ORTHO05D003690 1.2e-15 87.4 218 35.8
Lalb_Chr03g0031631 Lupinus albus HOM05D003316 ORTHO05D003690 2.7e-15 86.3 230 38.3
THA.LOC104808128 Tarenaya hassleriana HOM05D003316 ORTHO05D003690 3.6e-15 85.9 135 44.4
MSTRG.16103 Avicennia marina HOM05D003316 ORTHO05D003690 4.7e-15 85.5 138 48.6
Cc05_g16270 Coffea canephora HOM05D003316 ORTHO05D003690 6.1e-15 85.1 144 46.5
Lalb_Chr20g0108611 Lupinus albus HOM05D003316 ORTHO05D003690 6.1e-15 85.1 218 34.4
Phvul.005G051100 Phaseolus vulgaris HOM05D003316 ORTHO05D003690 6.1e-15 85.1 234 38.5
Nitab4.5_0008429g0010 Nicotiana tabacum HOM05D003316 ORTHO05D003690 7.9e-15 84.7 222 36.0
vmacro11707 Vaccinium macrocarpon HOM05D003316 ORTHO05D003690 7.9e-15 84.7 221 33.0
Nn7g37833 Nelumbo nucifera HOM05D003316 ORTHO05D003690 1.0e-14 84.3 235 33.2
Oeu051683.1 Olea europaea HOM05D003316 ORTHO05D003690 1.0e-14 84.3 137 44.5
Psat1g005840 Pisum sativum HOM05D003316 ORTHO05D003690 1.0e-14 84.3 231 38.1
CAN.G492.73 Capsicum annuum HOM05D003316 ORTHO05D003690 1.4e-14 84.0 211 35.1
Glyma.15G259100 Glycine max HOM05D003316 ORTHO05D003690 1.4e-14 84.0 238 34.9
QL04p080199 Quercus lobata HOM05D003316 ORTHO05D003690 1.4e-14 84.0 142 47.2
VMungo1080G0561 Vigna mungo HOM05D003316 ORTHO05D003690 1.4e-14 84.0 236 38.1
Aa31LG4G1840 Aethionema arabicum HOM05D003316 ORTHO05D003690 1.8e-14 83.6 139 42.4
Medtr2g066700 Medicago truncatula HOM05D003316 ORTHO05D003690 1.8e-14 83.6 234 35.5
CDE06G2584 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 3.0e-14 82.8 211 35.5
MSTRG.14558 Avicennia marina HOM05D003316 ORTHO05D003690 3.9e-14 82.4 139 43.2
Haze_07827 Corylus avellana HOM05D003316 ORTHO05D003690 3.9e-14 82.4 142 44.4
PGSC0003DMG400022120 Solanum tuberosum HOM05D003316 ORTHO05D003690 6.7e-14 81.6 204 35.3
THA.LOC104813611 Tarenaya hassleriana HOM05D003316 ORTHO05D003690 6.7e-14 81.6 143 42.7
TPR.G33853 Trifolium pratense HOM05D003316 ORTHO05D003690 6.7e-14 81.6 232 34.5
Cfa022970 Carpinus fangiana HOM05D003316 ORTHO05D003690 8.8e-14 81.3 142 43.7
CiPaw.11G063000 Carya illinoinensis HOM05D003316 ORTHO05D003690 8.8e-14 81.3 142 45.8
MBI02_g21020_MAGBIO Magnolia biondii HOM05D003316 ORTHO05D003690 8.8e-14 81.3 229 31.4
Peaxi162Scf00452g00411 Petunia axillaris HOM05D003316 ORTHO05D003690 8.8e-14 81.3 210 31.9
unitig_32.g11082 Utricularia gibba HOM05D003316 ORTHO05D003690 1.1e-13 80.9 195 35.9
Cpa.g.c44098 Carica papaya HOM05D003316 ORTHO05D003690 1.5e-13 80.5 143 41.3
Migut.M01536 Erythranthe guttata HOM05D003316 ORTHO05D003690 1.5e-13 80.5 150 42.0
Potri.007G067300 Populus trichocarpa HOM05D003316 ORTHO05D003690 2.0e-13 80.1 226 35.0
ECA236G2699 Erigeron canadensis HOM05D003316 ORTHO05D003690 2.6e-13 79.7 143 43.4
Lj3g0011134 Lotus japonicus HOM05D003316 ORTHO05D003690 2.6e-13 79.7 215 36.7
unitig_37.g12202 Utricularia gibba HOM05D003316 ORTHO05D003690 2.6e-13 79.7 205 32.7
Lsat_1_v5_gn_7_110360 Lactuca sativa HOM05D003316 ORTHO05D003690 3.3e-13 79.3 146 41.8
Lj3g0011998 Lotus japonicus HOM05D003316 ORTHO05D003690 3.3e-13 79.3 231 35.1
Manes.14G011100 Manihot esculenta HOM05D003316 ORTHO05D003690 3.3e-13 79.3 178 38.2
Lalb_Chr25g0284791 Lupinus albus HOM05D003316 ORTHO05D003690 4.4e-13 79.0 216 34.3
SHI21400 Sapria himalayana HOM05D003316 ORTHO05D003690 4.4e-13 79.0 132 41.7
MSTRG.13075 Avicennia marina HOM05D003316 ORTHO05D003690 5.7e-13 78.6 144 41.0
QL04p080175 Quercus lobata HOM05D003316 ORTHO05D003690 5.7e-13 78.6 142 45.1
CARHR016970 Cardamine hirsuta HOM05D003316 ORTHO05D003690 7.4e-13 78.2 125 43.2
HanXRQChr11g0335691 Helianthus annuus HOM05D003316 ORTHO05D003690 7.4e-13 78.2 140 41.4
QL04p080015 Quercus lobata HOM05D003316 ORTHO05D003690 7.4e-13 78.2 142 45.1
HPP92_026353 Vanilla planifolia HOM05D003316 ORTHO05D003690 7.4e-13 78.2 169 36.7
unitig_749.g13695 Utricularia gibba HOM05D003316 ORTHO05D003690 9.7e-13 77.8 130 43.1
Eucgr.F01471 Eucalyptus grandis HOM05D003316 ORTHO05D003690 1.3e-12 77.4 140 40.7
Thhalv10008548m.g Eutrema salsugineum HOM05D003316 ORTHO05D003690 1.3e-12 77.4 151 39.1
A09p60880 Brassica napus HOM05D003316 ORTHO05D003690 1.7e-12 77.0 140 40.7
ClCG09G022660 Citrullus lanatus HOM05D003316 ORTHO05D003690 1.7e-12 77.0 142 38.7
COL.COLO4_07011 Corchorus olitorius HOM05D003316 ORTHO05D003690 1.7e-12 77.0 178 39.3
Duzib213G0545 Durio zibethinus HOM05D003316 ORTHO05D003690 1.7e-12 77.0 211 36.5
SGA_v2.0_scaffold239G44036 Striga asiatica HOM05D003316 ORTHO05D003690 1.7e-12 77.0 146 42.5
BraA09t41461Z Brassica rapa HOM05D003316 ORTHO05D003690 2.2e-12 76.6 140 40.7
Duzib187G1768 Durio zibethinus HOM05D003316 ORTHO05D003690 2.2e-12 76.6 176 39.2
ECA240G0877 Erigeron canadensis HOM05D003316 ORTHO05D003690 2.2e-12 76.6 118 49.2
Prupe.4G136500 Prunus persica HOM05D003316 ORTHO05D003690 2.2e-12 76.6 146 37.0
HanXRQChr13g0409371 Helianthus annuus HOM05D003316 ORTHO05D003690 2.8e-12 76.3 161 39.8
TWI38G1355 Tripterygium wilfordii HOM05D003316 ORTHO05D003690 2.8e-12 76.3 246 32.1
Aa31LG7G1040 Aethionema arabicum HOM05D003316 ORTHO05D003690 3.7e-12 75.9 115 46.1
CDE02G2536 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 3.7e-12 75.9 205 31.7
Gohir.A13G122600 Gossypium hirsutum HOM05D003316 ORTHO05D003690 6.3e-12 75.1 176 38.1
SGA_v2.0_scaffold49G18186 Striga asiatica HOM05D003316 ORTHO05D003690 6.3e-12 75.1 149 39.6
Thecc.07G169200 Theobroma cacao HOM05D003316 ORTHO05D003690 6.3e-12 75.1 180 39.4
Atru.chr1.123 Acer truncatum HOM05D003316 ORTHO05D003690 1.1e-11 74.3 154 41.6
MELO3C012614.2 Cucumis melo HOM05D003316 ORTHO05D003690 1.1e-11 74.3 144 38.9
CsaV3_7G022850 Cucumis sativus L. HOM05D003316 ORTHO05D003690 1.1e-11 74.3 145 38.6
Eucgr.F04447 Eucalyptus grandis HOM05D003316 ORTHO05D003690 1.1e-11 74.3 238 31.5
FAN25G0335 Fragaria x ananassa HOM05D003316 ORTHO05D003690 1.1e-11 74.3 230 31.7
Sed0011738 Sechium edule HOM05D003316 ORTHO05D003690 1.1e-11 74.3 142 43.0
Gohir.D13G126700 Gossypium hirsutum HOM05D003316 ORTHO05D003690 1.4e-11 73.9 177 36.2
MD10G1205200 Malus domestica HOM05D003316 ORTHO05D003690 1.4e-11 73.9 147 38.1
A06p12480 Brassica napus HOM05D003316 ORTHO05D003690 1.8e-11 73.6 219 31.1
C08p44470 Brassica napus HOM05D003316 ORTHO05D003690 1.8e-11 73.6 130 40.8
BraA06t24411Z Brassica rapa HOM05D003316 ORTHO05D003690 1.8e-11 73.6 219 31.1
Gorai.002G106100 Gossypium raimondii HOM05D003316 ORTHO05D003690 1.8e-11 73.6 167 38.9
Phvul.011G172700 Phaseolus vulgaris HOM05D003316 ORTHO05D003690 1.8e-11 73.6 143 38.5
Sed0001262 Sechium edule HOM05D003316 ORTHO05D003690 1.8e-11 73.6 148 39.2
BcaB02g06634 Brassica carinata HOM05D003316 ORTHO05D003690 2.4e-11 73.2 142 38.0
Carub.0001s1625 Capsella rubella HOM05D003316 ORTHO05D003690 2.4e-11 73.2 107 48.6
MD05G1223700 Malus domestica HOM05D003316 ORTHO05D003690 2.4e-11 73.2 145 40.7
Aqoxy1G01502 Aquilegia oxysepala HOM05D003316 ORTHO05D003690 3.1e-11 72.8 136 41.9
Aqoxy1G01506 Aquilegia oxysepala HOM05D003316 ORTHO05D003690 3.1e-11 72.8 136 41.9
MELO3C019643.2 Cucumis melo HOM05D003316 ORTHO05D003690 3.1e-11 72.8 153 41.8
Gohir.D01G081200 Gossypium hirsutum HOM05D003316 ORTHO05D003690 3.1e-11 72.8 169 37.9
AL1G28660 Arabidopsis lyrata HOM05D003316 ORTHO05D003690 5.3e-11 72.0 102 45.1
BcaC05g25564 Brassica carinata HOM05D003316 ORTHO05D003690 5.3e-11 72.0 142 38.0
BolC6t40320H Brassica oleracea HOM05D003316 ORTHO05D003690 5.3e-11 72.0 97 47.4
CARHR072810 Cardamine hirsuta HOM05D003316 ORTHO05D003690 5.3e-11 72.0 143 39.9
Ciclev10005652m.g Citrus clementina HOM05D003316 ORTHO05D003690 5.3e-11 72.0 156 35.9
FvH4_3g15360 Fragaria vesca HOM05D003316 ORTHO05D003690 5.3e-11 72.0 230 28.7
FAN11G0988 Fragaria x ananassa HOM05D003316 ORTHO05D003690 5.3e-11 72.0 230 28.7
FAN21G3518 Fragaria x ananassa HOM05D003316 ORTHO05D003690 7.0e-11 71.6 231 30.7
Gorai.013G141800 Gossypium raimondii HOM05D003316 ORTHO05D003690 7.0e-11 71.6 175 36.6
AT1G79160 Arabidopsis thaliana HOM05D003316 ORTHO05D003690 9.1e-11 71.2 133 40.6
BcaB02g08670 Brassica carinata HOM05D003316 ORTHO05D003690 9.1e-11 71.2 141 39.0
C05p14730 Brassica napus HOM05D003316 ORTHO05D003690 9.1e-11 71.2 141 38.3
BolC5t30193H Brassica oleracea HOM05D003316 ORTHO05D003690 9.1e-11 71.2 141 38.3
FAN16G3516 Fragaria x ananassa HOM05D003316 ORTHO05D003690 9.1e-11 71.2 231 31.2
Lalb_Chr01g0015851 Lupinus albus HOM05D003316 ORTHO05D003690 9.1e-11 71.2 214 31.8
Sed0022394 Sechium edule HOM05D003316 ORTHO05D003690 9.1e-11 71.2 169 34.9
arahy.Tifrunner.gnm1.ann1.JV1AYU Arachis hypogaea HOM05D003316 ORTHO05D003690 1.2e-10 70.9 256 33.6
BcaC08g47478 Brassica carinata HOM05D003316 ORTHO05D003690 1.2e-10 70.9 97 46.4
BcaNung04897 Brassica carinata HOM05D003316 ORTHO05D003690 1.2e-10 70.9 97 46.4
C06p53030 Brassica napus HOM05D003316 ORTHO05D003690 1.2e-10 70.9 97 46.4
CsaV3_6G013590 Cucumis sativus L. HOM05D003316 ORTHO05D003690 1.2e-10 70.9 153 41.2
Gohir.A01G096900 Gossypium hirsutum HOM05D003316 ORTHO05D003690 1.2e-10 70.9 169 37.9
arahy.Tifrunner.gnm1.ann1.Q78MS7 Arachis hypogaea HOM05D003316 ORTHO05D003690 1.6e-10 70.5 255 33.3
A07p44280 Brassica napus HOM05D003316 ORTHO05D003690 1.6e-10 70.5 115 42.6
BraA07t31937Z Brassica rapa HOM05D003316 ORTHO05D003690 1.6e-10 70.5 115 42.6
Nitab4.5_0000611g0030 Nicotiana tabacum HOM05D003316 ORTHO05D003690 1.6e-10 70.5 197 35.5
Sed0025744 Sechium edule HOM05D003316 ORTHO05D003690 1.6e-10 70.5 216 32.9
AL2G39640 Arabidopsis lyrata HOM05D003316 ORTHO05D003690 2.0e-10 70.1 132 41.7
BcaC05g25563 Brassica carinata HOM05D003316 ORTHO05D003690 2.0e-10 70.1 143 37.8
Carub.0002s2603 Capsella rubella HOM05D003316 ORTHO05D003690 2.0e-10 70.1 102 44.1
ClCG02G018610 Citrullus lanatus HOM05D003316 ORTHO05D003690 2.0e-10 70.1 152 38.2
Sp1g14650 Schrenkiella parvula HOM05D003316 ORTHO05D003690 2.0e-10 70.1 152 36.2
Sp5g34220 Schrenkiella parvula HOM05D003316 ORTHO05D003690 2.0e-10 70.1 143 37.1
Hund12435 Selenicereus undatus HOM05D003316 ORTHO05D003690 2.0e-10 70.1 140 38.6
BolC8t51988H Brassica oleracea HOM05D003316 ORTHO05D003690 2.6e-10 69.7 139 39.6
Potri.005G096800 Populus trichocarpa HOM05D003316 ORTHO05D003690 3.5e-10 69.3 144 39.6
CDE05G3501 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 4.5e-10 68.9 206 29.6
Migut.H01676 Erythranthe guttata HOM05D003316 ORTHO05D003690 4.5e-10 68.9 229 31.0
Manes.16G061900 Manihot esculenta HOM05D003316 ORTHO05D003690 1.0e-09 67.8 137 39.4
Lalb_Chr19g0133361 Lupinus albus HOM05D003316 ORTHO05D003690 1.7e-09 67.0 129 41.1
AT1G16500 Arabidopsis thaliana HOM05D003316 ORTHO05D003690 2.2e-09 66.6 101 44.6
RcHm_v2.0_Chr5g0025801 Rosa chinensis HOM05D003316 ORTHO05D003690 2.9e-09 66.2 151 37.1
BcaC08g45373 Brassica carinata HOM05D003316 ORTHO05D003690 3.8e-09 65.9 132 38.6
C06p30040 Brassica napus HOM05D003316 ORTHO05D003690 3.8e-09 65.9 132 38.6
BolC6t38165H Brassica oleracea HOM05D003316 ORTHO05D003690 3.8e-09 65.9 132 38.6
unitig_578.g16328 Utricularia gibba HOM05D003316 ORTHO05D003690 3.8e-09 65.9 148 37.8
EL10Ac8g18492 Beta vulgaris HOM05D003316 ORTHO05D003690 5.0e-09 65.5 256 27.7
CANSAT80G0009 Cannabis sativa HOM05D003316 ORTHO05D003690 8.5e-09 64.7 126 34.9
Manes.06G175000 Manihot esculenta HOM05D003316 ORTHO05D003690 1.1e-08 64.3 149 38.9
Sc06g0002770 Simmondsia chinensis HOM05D003316 ORTHO05D003690 1.9e-08 63.5 143 35.7
PGR031G2416 Punica granatum HOM05D003316 ORTHO05D003690 3.2e-08 62.8 221 32.1
Sc09g0007620 Simmondsia chinensis HOM05D003316 ORTHO05D003690 5.5e-08 62.0 150 35.3
HPP92_004183 Vanilla planifolia HOM05D003316 ORTHO05D003690 7.2e-08 61.6 217 29.0
CSS0033846 Camellia sinensis var. sinensis HOM05D003316 ORTHO05D003690 1.2e-07 60.8 115 44.3
CDE01G0250 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 1.2e-07 60.8 197 26.9
AUR62010409 Chenopodium quinoa HOM05D003316 ORTHO05D003690 2.7e-07 59.7 67 49.3
SEGI_30064 Sequoiadendron giganteum HOM05D003316 ORTHO05D003690 4.7e-07 58.9 83 41.0
AUR62016808 Chenopodium quinoa HOM05D003316 ORTHO05D003690 1.4e-06 57.4 158 31.0
unitig_8.g4755 Utricularia gibba HOM05D003316 ORTHO05D003690 2.3e-06 56.6 147 34.0
CDE12G0925 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 5.2e-06 55.5 145 31.0


User provided reference genes

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