Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr10.261 Acer truncatum HOM05D006797 ORTHO05D007696 2.7e-56 221.9 121 100.0
Ciclev10017227m.g Citrus clementina HOM05D006797 ORTHO05D007696 1.0e-31 140.2 116 72.4
QL11p011767 Quercus lobata HOM05D006797 ORTHO05D007696 6.4e-29 131.0 116 63.8
Lalb_Chr07g0188191 Lupinus albus HOM05D006797 ORTHO05D007696 3.9e-26 121.7 121 62.8
RcHm_v2.0_Chr5g0021541 Rosa chinensis HOM05D006797 ORTHO05D007696 6.6e-26 120.9 112 62.5
GSVIVG01012170001 Vitis vinifera HOM05D006797 ORTHO05D007696 1.1e-25 120.2 115 61.7
arahy.Tifrunner.gnm1.ann1.30I9D2 Arachis hypogaea HOM05D006797 ORTHO05D007696 2.5e-25 119.0 115 62.6
arahy.Tifrunner.gnm1.ann1.3X9X11 Arachis hypogaea HOM05D006797 ORTHO05D007696 2.5e-25 119.0 115 62.6
Sed0011432 Sechium edule HOM05D006797 ORTHO05D007696 3.3e-25 118.6 121 64.5
Prupe.4G119300 Prunus persica HOM05D006797 ORTHO05D007696 9.5e-25 117.1 122 59.8
Glyma.08G089600 Glycine max HOM05D006797 ORTHO05D007696 1.6e-24 116.3 121 60.3
ClCG01G025860 Citrullus lanatus HOM05D006797 ORTHO05D007696 2.1e-24 115.9 123 63.4
CiPaw.10G107100 Carya illinoinensis HOM05D006797 ORTHO05D007696 2.8e-24 115.5 118 60.2
Glyma.05G134500 Glycine max HOM05D006797 ORTHO05D007696 2.8e-24 115.5 121 59.5
Ah.15g091850 Amaranthus hybridus HOM05D006797 ORTHO05D007696 4.7e-24 114.8 113 62.8
Phvul.002G187600 Phaseolus vulgaris HOM05D006797 ORTHO05D007696 4.7e-24 114.8 121 59.5
MELO3C007002.2 Cucumis melo HOM05D006797 ORTHO05D007696 6.2e-24 114.4 123 60.2
Duzib211G0055 Durio zibethinus HOM05D006797 ORTHO05D007696 1.0e-23 113.6 117 64.1
TWI38G0311 Tripterygium wilfordii HOM05D006797 ORTHO05D007696 1.8e-23 112.8 112 61.6
TAR626G0010 Trochodendron aralioides HOM05D006797 ORTHO05D007696 3.1e-23 112.1 125 56.8
Medtr4g094782 Medicago truncatula HOM05D006797 ORTHO05D007696 1.2e-22 110.2 118 57.6
CSS0049260 Camellia sinensis var. sinensis HOM05D006797 ORTHO05D007696 2.0e-22 109.4 113 61.1
CsaV3_6G053080 Cucumis sativus L. HOM05D006797 ORTHO05D007696 5.8e-22 107.8 122 58.2
Lsat_1_v5_gn_3_103300 Lactuca sativa HOM05D006797 ORTHO05D007696 5.8e-22 107.8 110 60.9
MD10G1226000 Malus domestica HOM05D006797 ORTHO05D007696 5.8e-22 107.8 122 55.7
Migut.F00519 Erythranthe guttata HOM05D006797 ORTHO05D007696 7.5e-22 107.5 113 56.6
Sc24g0002860 Simmondsia chinensis HOM05D006797 ORTHO05D007696 7.5e-22 107.5 119 55.5
SGA_v2.0_scaffold60G20810 Striga asiatica HOM05D006797 ORTHO05D007696 7.5e-22 107.5 121 57.0
CDE05G1867 Ceratophyllum demersum HOM05D006797 ORTHO05D007696 9.8e-22 107.1 121 55.4
Manes.03G071800 Manihot esculenta HOM05D006797 ORTHO05D007696 9.8e-22 107.1 113 60.2
TPR.G27392 Trifolium pratense HOM05D006797 ORTHO05D007696 9.8e-22 107.1 122 57.4
Ca_18220_v3 Cicer arietinum L. HOM05D006797 ORTHO05D007696 1.3e-21 106.7 122 57.4
Rhsim13G0134800 Rhododendron simsii HOM05D006797 ORTHO05D007696 2.2e-21 105.9 127 52.0
EL10Ac7g17249 Beta vulgaris HOM05D006797 ORTHO05D007696 3.7e-21 105.1 112 55.4
CANSAT35G2044 Cannabis sativa HOM05D006797 ORTHO05D007696 3.7e-21 105.1 110 53.6
Gorai.010G130400 Gossypium raimondii HOM05D006797 ORTHO05D007696 3.7e-21 105.1 126 56.3
Gohir.A06G110200 Gossypium hirsutum HOM05D006797 ORTHO05D007696 6.4e-21 104.4 118 57.6
VMungo0251G2933 Vigna mungo HOM05D006797 ORTHO05D007696 1.1e-20 103.6 107 61.7
Cpa.g.sc30.90 Carica papaya HOM05D006797 ORTHO05D007696 1.4e-20 103.2 107 63.6
SGA_v2.0_scaffold44G16576 Striga asiatica HOM05D001006 ORTHO05D000868 1.4e-20 103.2 120 55.8
MSTRG.8842 Avicennia marina HOM05D006797 ORTHO05D007696 1.9e-20 102.8 114 57.0
Gohir.D06G114100 Gossypium hirsutum HOM05D006797 ORTHO05D007696 1.9e-20 102.8 126 55.6
HanXRQChr12g0377351 Helianthus annuus HOM05D006797 ORTHO05D007696 2.4e-20 102.4 112 57.1
Psat7g087040 Pisum sativum HOM05D006797 ORTHO05D007696 2.4e-20 102.4 122 54.9
Potri.003G155400 Populus trichocarpa HOM05D006797 ORTHO05D007696 2.4e-20 102.4 117 59.0
FAN16G2513 Fragaria x ananassa HOM05D006797 ORTHO05D007696 4.1e-20 101.7 112 56.2
Cc09_g04790 Coffea canephora HOM05D006797 ORTHO05D007696 5.4e-20 101.3 121 54.5
Oeu036765.2 Olea europaea HOM05D006797 ORTHO05D007696 5.4e-20 101.3 122 54.9
PGR042G0784 Punica granatum HOM05D006797 ORTHO05D007696 7.0e-20 100.9 128 53.1
ECA248G3234 Erigeron canadensis HOM05D006797 ORTHO05D007696 9.2e-20 100.5 112 56.2
FAN21G4013 Fragaria x ananassa HOM05D006797 ORTHO05D007696 9.2e-20 100.5 112 56.2
FAN25G1182 Fragaria x ananassa HOM05D006797 ORTHO05D007696 2.0e-19 99.4 112 55.4
Hund23985 Selenicereus undatus HOM05D006797 ORTHO05D007696 3.5e-19 98.6 100 60.0
FvH4_3g13200 Fragaria vesca HOM05D006797 ORTHO05D007696 4.6e-19 98.2 112 55.4
FAN11G3985 Fragaria x ananassa HOM05D006797 ORTHO05D007696 4.6e-19 98.2 112 55.4
COL.COLO4_25039 Corchorus olitorius HOM05D006797 ORTHO05D007696 1.7e-18 96.3 104 57.7
Solyc02g082020.3 Solanum lycopersicum HOM05D006797 ORTHO05D007696 6.6e-18 94.4 114 58.8
Hma1.2p1_1220F.1_g268030 Hydrangea macrophylla HOM05D006797 ORTHO05D007696 1.1e-17 93.6 127 53.5
Sopen02g026660 Solanum pennellii HOM05D006797 ORTHO05D007696 1.5e-17 93.2 114 57.9
ATR0763G022 Amborella trichopoda HOM05D006797 ORTHO05D007696 1.9e-17 92.8 115 55.7
Dinv02379 Davidia involucrata HOM05D006797 ORTHO05D007696 1.9e-17 92.8 105 55.2
Lj4g0013366 Lotus japonicus HOM05D006797 ORTHO05D007696 2.5e-17 92.4 105 55.2
CAN.G809.30 Capsicum annuum HOM05D006797 ORTHO05D007696 5.6e-17 91.3 114 56.1
PGSC0003DMG400007337 Solanum tuberosum HOM05D006797 ORTHO05D007696 7.3e-17 90.9 114 57.0
THA.LOC104812696 Tarenaya hassleriana HOM05D006797 ORTHO05D007696 9.5e-17 90.5 130 52.3
Nitab4.5_0003902g0030 Nicotiana tabacum HOM05D006797 ORTHO05D007696 1.2e-16 90.1 114 55.3
AUR62042807 Chenopodium quinoa HOM05D006797 ORTHO05D007696 2.1e-16 89.4 112 52.7
Nitab4.5_0000632g0020 Nicotiana tabacum HOM05D006797 ORTHO05D007696 2.1e-16 89.4 114 55.3
Dinv03172 Davidia involucrata HOM05D006797 ORTHO05D007696 3.6e-16 88.6 126 48.4
Nn1g05854 Nelumbo nucifera HOM05D006797 ORTHO05D007696 3.6e-16 88.6 116 50.9
SalBow3G3973 Salvia bowleyana HOM05D006797 ORTHO05D007696 3.6e-16 88.6 112 53.6
Peaxi162Scf00036g02019 Petunia axillaris HOM05D006797 ORTHO05D007696 1.1e-15 87.0 115 53.9
HPP92_013198 Vanilla planifolia HOM05D006797 ORTHO05D007696 1.4e-15 86.7 116 52.6
Zm00001eb430680 Zea mays HOM05D006797 ORTHO05D007696 2.3e-15 85.9 112 49.1
Aqoxy3G03581 Aquilegia oxysepala HOM05D006409 ORTHO05D008250 5.2e-15 84.7 120 49.2
Haze_24216 Corylus avellana HOM05D006797 ORTHO05D007696 6.8e-15 84.3 126 46.8
Zm00001eb071100 Zea mays HOM05D006797 ORTHO05D007696 6.8e-15 84.3 112 49.1
Os04g0611300 Oryza sativa ssp. japonica HOM05D006797 ORTHO05D007696 1.5e-14 83.2 112 49.1
DCAR_001265 Daucus carota HOM05D006797 ORTHO05D007696 2.0e-14 82.8 100 52.0
BcaB04g18200 Brassica carinata HOM05D006797 ORTHO05D007696 5.8e-14 81.3 127 49.6
PSO675G1942 Papaver somniferum HOM05D006797 ORTHO05D007696 9.8e-14 80.5 121 43.8
BraA08t33088Z Brassica rapa HOM05D006797 ORTHO05D007696 1.7e-13 79.7 125 52.0
Zm00001eb442340 Zea mays HOM05D006797 ORTHO05D007696 2.2e-13 79.3 96 51.0
Aa31LG6G12300 Aethionema arabicum HOM05D006797 ORTHO05D007696 2.9e-13 79.0 123 50.4
PSO541G4265 Papaver somniferum HOM05D006797 ORTHO05D007696 2.9e-13 79.0 121 43.0
Thhalv10009126m.g Eutrema salsugineum HOM05D006797 ORTHO05D007696 3.7e-13 78.6 125 48.0
vmacro03563 Vaccinium macrocarpon HOM05D006797 ORTHO05D007696 3.7e-13 78.6 66 66.7
BcaC07g37796 Brassica carinata HOM05D006797 ORTHO05D007696 4.9e-13 78.2 123 52.8
AL1G45170 Arabidopsis lyrata HOM05D006797 ORTHO05D007696 6.4e-13 77.8 127 52.8
MBI18_g20922_MAGBIO Magnolia biondii HOM05D006797 ORTHO05D007696 6.4e-13 77.8 103 50.5
A08p10910 Brassica napus HOM05D006797 ORTHO05D007696 1.1e-12 77.0 123 52.0
Sabra03G0112800 Salix brachista HOM05D006797 ORTHO05D007696 1.4e-12 76.6 58 74.1
Sp1g26780 Schrenkiella parvula HOM05D006797 ORTHO05D007696 3.2e-12 75.5 126 49.2
BolC8t48187H Brassica oleracea HOM05D006797 ORTHO05D007696 4.1e-12 75.1 125 50.4
Thecc.02G002300 Theobroma cacao HOM05D006797 ORTHO05D007696 7.1e-12 74.3 58 67.2
BcaC05g27127 Brassica carinata HOM05D006797 ORTHO05D007696 9.2e-12 73.9 125 45.6
A09p35270 Brassica napus HOM05D006797 ORTHO05D007696 9.2e-12 73.9 121 51.2
C05p30120 Brassica napus HOM05D006797 ORTHO05D007696 9.2e-12 73.9 125 45.6
A07p09570 Brassica napus HOM05D006797 ORTHO05D007696 2.1e-11 72.8 120 50.0
BraA07t28751Z Brassica rapa HOM05D006797 ORTHO05D007696 2.1e-11 72.8 120 50.0
BraA09t39054Z Brassica rapa HOM05D006797 ORTHO05D007696 2.1e-11 72.8 127 50.4
Haze_05201 Corylus avellana HOM05D000001 ORTHO05D010268 2.1e-11 72.8 48 79.2
Haze_15747 Corylus avellana HOM05D006797 ORTHO05D007696 2.1e-11 72.8 48 79.2
BolC7t41975H Brassica oleracea HOM05D006797 ORTHO05D007696 2.7e-11 72.4 125 45.6
C07p14730 Brassica napus HOM05D006797 ORTHO05D007696 6.0e-11 71.2 125 44.8
Carub.0001s2922 Capsella rubella HOM05D006797 ORTHO05D007696 7.8e-11 70.9 125 48.8
CARHR030370 Cardamine hirsuta HOM05D006797 ORTHO05D007696 7.8e-11 70.9 125 46.4
AT1G30880 Arabidopsis thaliana HOM05D006797 ORTHO05D007696 1.0e-10 70.5 128 48.4
BcaB07g32754 Brassica carinata HOM05D006797 ORTHO05D007696 1.7e-10 69.7 123 46.3
unitig_37.g11921 Utricularia gibba HOM05D006797 ORTHO05D007696 5.1e-10 68.2 74 54.1
BolC5t31749H Brassica oleracea HOM05D006797 ORTHO05D007696 2.5e-09 65.9 129 44.2
Pp3c24_14860 Physcomitrium patens HOM05D006797 ORTHO05D007696 9.5e-09 63.9 118 44.1
Hma1.2p1_0747F.1_g212490 Hydrangea macrophylla HOM05D006797 ORTHO05D007696 6.2e-08 61.2 75 50.7
Cfa002056 Carpinus fangiana HOM05D006797 ORTHO05D007696 2.3e-07 59.3 155 34.2
AagrBONN_evm.TU.Sc2ySwM_117.639 Anthoceros agrestis HOM05D006797 ORTHO05D007696 5.8e-06 54.7 128 39.1
Oeu008734.1 Olea europaea HOM05D016541 ORTHO05D007696 7.6e-06 54.3 65 53.8
Sabra15G0036100 Salix brachista HOM05D006797 ORTHO05D007696 9.9e-06 53.9 37 75.7


User provided reference genes

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