Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr10.2417 Acer truncatum HOM05D005969 ORTHO05D007407 1.7e-210 735.7 371 100.0
Potri.001G044000 Populus trichocarpa HOM05D005969 ORTHO05D007407 2.9e-157 558.9 380 76.1
TWI12G1191 Tripterygium wilfordii HOM05D005969 ORTHO05D007407 4.9e-157 558.1 387 74.9
GSVIVG01015969001 Vitis vinifera HOM05D005969 ORTHO05D007407 2.5e-156 555.8 371 77.4
CANSAT56G2142 Cannabis sativa HOM05D005969 ORTHO05D007407 2.7e-155 552.4 338 81.1
Sabra01G0030300 Salix brachista HOM05D005969 ORTHO05D007407 5.1e-154 548.1 376 74.7
Haze_16671 Corylus avellana HOM05D005969 ORTHO05D007407 6.7e-154 547.7 390 73.8
Cfa001877 Carpinus fangiana HOM05D005969 ORTHO05D007407 1.9e-153 546.2 371 75.7
FvH4_6g28580 Fragaria vesca HOM05D005969 ORTHO05D007407 4.3e-153 545.0 388 72.7
FAN02G2588 Fragaria x ananassa HOM05D005969 ORTHO05D007407 4.3e-153 545.0 390 72.3
Thhalv10018762m.g Eutrema salsugineum HOM05D005969 ORTHO05D007407 7.4e-153 544.3 318 84.3
Lalb_Chr01g0012061 Lupinus albus HOM05D005969 ORTHO05D007407 1.3e-152 543.5 324 82.4
Medtr4g007190 Medicago truncatula HOM05D005969 ORTHO05D007407 1.3e-152 543.5 360 76.1
arahy.Tifrunner.gnm1.ann1.WI8D6W Arachis hypogaea HOM05D005969 ORTHO05D007407 2.1e-152 542.7 360 75.3
CiPaw.01G255000 Carya illinoinensis HOM05D005969 ORTHO05D007407 2.1e-152 542.7 362 76.0
Ciclev10025812m.g Citrus clementina HOM05D005969 ORTHO05D007407 2.1e-152 542.7 391 73.1
RcHm_v2.0_Chr2g0132911 Rosa chinensis HOM05D005969 ORTHO05D007407 2.1e-152 542.7 387 72.1
arahy.Tifrunner.gnm1.ann1.M9PPGY Arachis hypogaea HOM05D005969 ORTHO05D007407 4.8e-152 541.6 360 75.0
AUR62027000 Chenopodium quinoa HOM05D005969 ORTHO05D007407 6.3e-152 541.2 348 76.7
Nn6g31679 Nelumbo nucifera HOM05D005969 ORTHO05D007407 1.1e-151 540.4 324 82.7
Gorai.009G123400 Gossypium raimondii HOM05D005969 ORTHO05D007407 2.4e-151 539.3 384 73.4
BraA07t31457Z Brassica rapa HOM05D005969 ORTHO05D007407 3.1e-151 538.9 318 83.0
CSS0032429 Camellia sinensis var. sinensis HOM05D005969 ORTHO05D007407 6.9e-151 537.7 385 73.5
TAR628G0900 Trochodendron aralioides HOM05D005969 ORTHO05D007407 6.9e-151 537.7 388 73.2
Sp5g28020 Schrenkiella parvula HOM05D005969 ORTHO05D007407 9.0e-151 537.3 318 83.0
Gohir.A05G118900 Gossypium hirsutum HOM05D005969 ORTHO05D007407 1.2e-150 537.0 384 73.2
AT1G73060 Arabidopsis thaliana HOM05D005969 ORTHO05D007407 1.5e-150 536.6 341 78.6
AUR62030840 Chenopodium quinoa HOM05D005969 ORTHO05D007407 1.5e-150 536.6 379 71.5
MELO3C023469.2 Cucumis melo HOM05D005969 ORTHO05D007407 1.5e-150 536.6 365 74.2
Gohir.D05G119800 Gossypium hirsutum HOM05D005969 ORTHO05D007407 1.5e-150 536.6 384 73.2
THA.LOC104814755 Tarenaya hassleriana HOM05D005969 ORTHO05D007407 1.5e-150 536.6 339 77.6
A07p39070 Brassica napus HOM05D005969 ORTHO05D007407 2.0e-150 536.2 315 83.2
C06p47280 Brassica napus HOM05D005969 ORTHO05D007407 2.0e-150 536.2 315 83.2
BolC6t39767H Brassica oleracea HOM05D005969 ORTHO05D007407 2.0e-150 536.2 315 83.2
Lj3g0024544 Lotus japonicus HOM05D005969 ORTHO05D007407 2.0e-150 536.2 318 82.4
Carub.0002s1982 Capsella rubella HOM05D005969 ORTHO05D007407 2.6e-150 535.8 341 78.9
Nitab4.5_0000886g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 5.9e-150 534.6 359 76.0
CAN.G1932.3 Capsicum annuum HOM05D005969 ORTHO05D007407 7.6e-150 534.3 354 76.6
Duzib235G1247 Durio zibethinus HOM05D005969 ORTHO05D007407 7.6e-150 534.3 382 72.5
PGSC0003DMG402028489 Solanum tuberosum HOM05D005969 ORTHO05D007407 1.0e-149 533.9 362 74.9
Phvul.010G161700 Phaseolus vulgaris HOM05D005969 ORTHO05D007407 1.3e-149 533.5 318 82.1
Nitab4.5_0008962g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 1.7e-149 533.1 370 73.5
MD10G1047600 Malus domestica HOM05D005969 ORTHO05D007407 5.0e-149 531.6 370 73.8
COL.COLO4_26714 Corchorus olitorius HOM05D005969 ORTHO05D007407 6.5e-149 531.2 373 73.5
Glyma.08G219200 Glycine max HOM05D005969 ORTHO05D007407 1.4e-148 530.0 365 74.5
Hma1.2p1_0109F.1_g052610 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 1.4e-148 530.0 380 73.2
VMungo0331G0028 Vigna mungo HOM05D005969 ORTHO05D007407 1.4e-148 530.0 385 71.2
CsaV3_7G031880 Cucumis sativus L. HOM05D005969 ORTHO05D007407 3.2e-148 528.9 365 73.4
ClCG09G003350 Citrullus lanatus HOM05D005969 ORTHO05D007407 4.2e-148 528.5 371 73.0
Dinv23280 Davidia involucrata HOM05D005969 ORTHO05D007407 4.2e-148 528.5 335 79.7
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 5.5e-148 528.1 318 81.8
AL2G32810 Arabidopsis lyrata HOM05D005969 ORTHO05D007407 7.2e-148 527.7 363 73.8
Solyc06g068480.3 Solanum lycopersicum HOM05D005969 ORTHO05D007407 3.5e-147 525.4 361 73.7
Sopen06g025730 Solanum pennellii HOM05D005969 ORTHO05D007407 4.6e-147 525.0 362 73.5
Psat7g262880 Pisum sativum HOM05D005969 ORTHO05D007407 6.1e-147 524.6 375 71.7
Actinidia18250 Actinidia chinensis HOM05D005969 ORTHO05D007407 1.0e-146 523.9 370 71.9
PGR102G2845 Punica granatum HOM05D005969 ORTHO05D007407 3.0e-146 522.3 389 71.0
SGA_v2.0_scaffold37G14696 Striga asiatica HOM05D005969 ORTHO05D007407 8.7e-146 520.8 365 72.6
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 1.1e-145 520.4 377 69.8
ATR0807G102 Amborella trichopoda HOM05D005969 ORTHO05D007407 1.9e-145 519.6 373 71.6
Eucgr.F03965 Eucalyptus grandis HOM05D005969 ORTHO05D007407 5.7e-145 518.1 321 78.5
EL10Ac9g22204 Beta vulgaris HOM05D005969 ORTHO05D007407 9.7e-145 517.3 370 70.3
MSTRG.22801 Avicennia marina HOM05D005969 ORTHO05D007407 4.8e-144 515.0 359 72.1
Migut.I00689 Erythranthe guttata HOM05D005969 ORTHO05D007407 1.1e-143 513.8 327 77.4
ECA247G4019 Erigeron canadensis HOM05D005969 ORTHO05D007407 1.4e-143 513.5 357 73.7
Thecc.06G042200 Theobroma cacao HOM05D005969 ORTHO05D007407 1.4e-143 513.5 362 74.3
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 1.8e-143 513.1 363 73.3
Cc04_g05150 Coffea canephora HOM05D005969 ORTHO05D007407 9.0e-143 510.8 370 71.9
PSO541G5031 Papaver somniferum HOM05D005969 ORTHO05D007407 1.5e-142 510.0 377 69.0
Aqoxy5G00978 Aquilegia oxysepala HOM05D005969 ORTHO05D007407 3.4e-142 508.8 347 71.2
PSO675G4447 Papaver somniferum HOM05D005969 ORTHO05D007407 4.5e-142 508.4 360 71.1
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 1.7e-141 506.5 368 70.9
Lsat_1_v5_gn_1_31041 Lactuca sativa HOM05D005969 ORTHO05D007407 2.2e-141 506.1 329 75.7
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 2.2e-141 506.1 322 77.3
DCAR_021370 Daucus carota HOM05D005969 ORTHO05D007407 1.1e-140 503.8 387 68.7
HanXRQChr04g0099681 Helianthus annuus HOM05D005969 ORTHO05D007407 1.1e-140 503.8 364 71.4
Hund06517 Selenicereus undatus HOM05D005969 ORTHO05D007407 7.2e-140 501.1 398 67.8
CDE06G0123 Ceratophyllum demersum HOM05D005969 ORTHO05D007407 1.4e-138 496.9 350 72.0
SalBow7G3052 Salvia bowleyana HOM05D005969 ORTHO05D007407 2.0e-137 493.0 356 69.9
Os02g0117100 Oryza sativa ssp. japonica HOM05D005969 ORTHO05D007407 5.3e-135 485.0 316 75.9
HPP92_025491 Vanilla planifolia HOM05D005969 ORTHO05D007407 2.0e-134 483.0 380 65.5
QL05p035856 Quercus lobata HOM05D005969 ORTHO05D007407 3.4e-134 482.3 276 86.2
Rhsim08G0203900 Rhododendron simsii HOM05D005969 ORTHO05D007407 8.5e-133 477.6 369 67.8
Peaxi162Scf00207g00440 Petunia axillaris HOM05D005969 ORTHO05D007407 2.3e-130 469.5 374 66.8
FAN05G1215 Fragaria x ananassa HOM05D005969 ORTHO05D007407 1.1e-127 460.7 293 77.8
Lj9C492T12 Lonicera japonica HOM05D005969 ORTHO05D007407 3.1e-127 459.1 268 84.7
unitig_27.g25102 Utricularia gibba HOM05D005969 ORTHO05D002795 7.7e-126 454.5 276 80.4
Ah.01g024670 Amaranthus hybridus HOM05D005969 ORTHO05D007407 6.3e-120 434.9 377 65.0
Mapoly0001s0169 Marchantia polymorpha HOM05D005969 ORTHO05D007407 6.3e-120 434.9 313 63.6
HanXRQChr14g0426701 Helianthus annuus HOM05D005969 ORTHO05D007407 2.0e-118 429.9 267 78.3
Pp3c4_10300 Physcomitrium patens HOM05D005969 ORTHO05D007407 7.7e-118 427.9 325 63.7
Manes.11G065200 Manihot esculenta HOM05D005969 ORTHO05D007407 3.6e-115 419.1 298 74.2
vmacro19064 Vaccinium macrocarpon HOM05D005969 ORTHO05D007407 1.0e-114 417.5 259 79.9
HPP92_025442 Vanilla planifolia HOM05D005969 ORTHO05D007407 5.4e-111 405.2 268 72.4
AagrBONN_evm.TU.Sc2ySwM_362.432 Anthoceros agrestis HOM05D005969 ORTHO05D007407 5.5e-108 395.2 318 59.7
SMO358G0640 Selaginella moellendorffii HOM05D005969 ORTHO05D007407 3.6e-107 392.5 325 59.1
arahy.Tifrunner.gnm1.ann1.5US335 Arachis hypogaea HOM05D005969 ORTHO05D007407 5.4e-103 378.6 270 72.2
arahy.Tifrunner.gnm1.ann1.9VR9ZH Arachis hypogaea HOM05D005969 ORTHO05D007407 1.1e-100 370.9 267 70.8
Prupe.3G098800 Prunus persica HOM05D005969 ORTHO05D007407 2.5e-100 369.8 288 67.0
FAN14G2562 Fragaria x ananassa HOM05D005969 ORTHO05D007407 4.9e-96 355.5 293 66.2
HanXRQChr04g0099721 Helianthus annuus HOM05D005969 ORTHO05D007407 6.4e-96 355.1 290 65.2
CARHR066030 Cardamine hirsuta HOM05D005969 ORTHO05D007407 1.8e-90 337.0 249 70.3
arahy.Tifrunner.gnm1.ann1.79PBZ8 Arachis hypogaea HOM05D005969 ORTHO05D007407 2.9e-80 303.1 269 64.7
MCO01G214 Micromonas commoda HOM05D005969 ORTHO05D007407 5.8e-73 278.9 325 43.7
MCO01G215 Micromonas commoda HOM05D005969 ORTHO05D007407 5.8e-73 278.9 325 43.7
arahy.Tifrunner.gnm1.ann1.UJC0YQ Arachis hypogaea HOM05D005969 ORTHO05D007407 1.4e-71 274.2 267 58.4
PRCOL_00001281 Prasinoderma coloniale HOM05D005969 ORTHO05D007407 1.9e-71 273.9 331 44.1
Cre03.g184550 Chlamydomonas reinhardtii HOM05D005969 ORTHO05D007407 1.7e-69 267.3 309 45.6
Sc12g0008350 Simmondsia chinensis HOM05D005969 ORTHO05D007407 1.6e-67 260.8 154 81.2
Ca_20531_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 1.5e-65 254.2 167 76.6
Ca_20538_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 8.7e-61 238.4 130 85.4
Hma1.2p1_0109F.1_g052630 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 3.3e-60 236.5 158 77.8
Zm00001eb230040 Zea mays HOM05D005969 ORTHO05D007407 3.6e-59 233.0 165 70.9
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 1.1e-36 158.3 91 82.4
CBR_g50572 Chara braunii HOM05D000019 ORTHO05D000048 5.7e-36 156.0 94 76.6
MCO09G747 Micromonas commoda HOM05D005969 ORTHO05D007407 1.3e-35 154.8 399 30.6
SEGI_39006 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 2.1e-30 137.5 85 74.1
HanXRQChr04g0099751 Helianthus annuus HOM05D005969 ORTHO05D007407 4.6e-30 136.3 79 79.7
Sc12g0008300 Simmondsia chinensis HOM05D005969 ORTHO05D007407 5.1e-29 132.9 90 71.1
CBR_g50568 Chara braunii HOM05D000004 ORTHO05D000002 8.2e-19 99.0 119 42.9
BcaB04g17655 Brassica carinata HOM05D005969 ORTHO05D007407 1.2e-17 95.1 64 73.4
QL04p063552 Quercus lobata HOM05D005969 ORTHO05D007407 4.5e-17 93.2 74 64.9
Hma1.2p1_0109F.1_g052620 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 4.2e-15 86.7 54 75.9
Glyma.07G022602 Glycine max HOM05D005969 ORTHO05D007407 1.6e-14 84.7 59 72.9
arahy.Tifrunner.gnm1.ann1.4WI1XR Arachis hypogaea HOM05D005969 ORTHO05D007407 2.7e-14 84.0 105 49.5
HanXRQChr14g0426781 Helianthus annuus HOM05D005969 ORTHO05D007407 1.4e-13 81.6 47 80.9
SEGI_03763 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 3.9e-13 80.1 98 46.9
SEGI_15560 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 3.9e-13 80.1 98 46.9
PGSC0003DMG400019818 Solanum tuberosum HOM05D005969 ORTHO05D007407 6.7e-13 79.3 95 50.5
Potri.003G182801 Populus trichocarpa HOM05D005969 ORTHO05D007407 4.8e-11 73.2 75 53.3
Pp3c12_7180 Physcomitrium patens HOM05D001237 ORTHO05D009110 3.1e-10 70.5 298 26.5
TPR.G26782 Trifolium pratense HOM05D009488 ORTHO05D011222 4.1e-10 70.1 93 48.4
Lj9C492T13 Lonicera japonica HOM05D005969 ORTHO05D007407 7.0e-10 69.3 100 46.0
TPR.G23080 Trifolium pratense HOM05D005969 ORTHO05D007407 2.0e-09 67.8 81 53.1
QL05p035860 Quercus lobata HOM05D005969 ORTHO05D007407 2.6e-09 67.4 110 47.3
Psat6g223920 Pisum sativum HOM05D002710 ORTHO05D002905 5.9e-09 66.2 169 32.5
vmacro22924 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 1.3e-08 65.1 321 25.9
HanXRQChr04g0099771 Helianthus annuus HOM05D005969 ORTHO05D007407 3.8e-08 63.5 42 73.8
AL8G21880 Arabidopsis lyrata HOM05D001237 ORTHO05D009110 8.5e-08 62.4 355 24.5
arahy.Tifrunner.gnm1.ann1.GZLR9S Arachis hypogaea HOM05D005969 ORTHO05D007407 8.5e-08 62.4 33 84.8
SMO356G0709 Selaginella moellendorffii HOM05D001237 ORTHO05D009110 8.5e-08 62.4 298 27.2
Nn3g19221 Nelumbo nucifera HOM05D001237 ORTHO05D009110 1.9e-07 61.2 285 24.6
Mapoly0052s0004 Marchantia polymorpha HOM05D001237 ORTHO05D009110 2.5e-07 60.8 319 25.7
Sopen08g024630 Solanum pennellii HOM05D001237 ORTHO05D009110 3.2e-07 60.5 285 25.6
AT5G48790 Arabidopsis thaliana HOM05D001237 ORTHO05D009110 1.6e-06 58.2 356 24.4
Lj8A324T105 Lonicera japonica HOM05D001237 ORTHO05D009110 1.6e-06 58.2 289 25.3


User provided reference genes

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