Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr10.2413 Acer truncatum HOM05D007259 ORTHO05D009158 1.2e-94 349.7 165 100.0
Ciclev10026584m.g Citrus clementina HOM05D007259 ORTHO05D009158 6.8e-82 307.4 165 83.6
Actinidia36875 Actinidia chinensis HOM05D007259 ORTHO05D009158 5.4e-79 297.7 163 81.0
Rhsim08G0205600 Rhododendron simsii HOM05D007259 ORTHO05D009158 5.4e-79 297.7 163 81.6
CANSAT56G1631 Cannabis sativa HOM05D007259 ORTHO05D009158 9.1e-79 297.0 165 79.4
PGR102G1952 Punica granatum HOM05D007259 ORTHO05D009158 5.9e-78 294.3 165 80.0
Eucgr.F03958 Eucalyptus grandis HOM05D007259 ORTHO05D009158 1.3e-77 293.1 165 75.8
CAN.G1932.2 Capsicum annuum HOM05D007259 ORTHO05D009158 2.9e-77 292.0 165 78.8
Hund00433 Selenicereus undatus HOM05D007259 ORTHO05D009158 2.9e-77 292.0 165 78.8
Potri.001G044200 Populus trichocarpa HOM05D007259 ORTHO05D009158 5.0e-77 291.2 165 78.8
GSVIVG01015956001 Vitis vinifera HOM05D007259 ORTHO05D009158 5.0e-77 291.2 165 77.6
Dinv21412 Davidia involucrata HOM05D007259 ORTHO05D009158 8.5e-77 290.4 165 78.2
Lj5A81T88 Lonicera japonica HOM05D007259 ORTHO05D009158 8.5e-77 290.4 165 77.6
TWI75G0585 Tripterygium wilfordii HOM05D007259 ORTHO05D009158 8.5e-77 290.4 165 79.4
Gohir.D06G118700 Gossypium hirsutum HOM05D007259 ORTHO05D009158 1.5e-76 289.7 165 78.2
RcHm_v2.0_Chr2g0132951 Rosa chinensis HOM05D007259 ORTHO05D009158 2.5e-76 288.9 165 78.2
Gorai.010G136500 Gossypium raimondii HOM05D007259 ORTHO05D009158 4.2e-76 288.1 165 77.6
PSO170G4635 Papaver somniferum HOM05D007259 ORTHO05D009158 4.2e-76 288.1 166 77.7
Lsat_1_v5_gn_5_8261 Lactuca sativa HOM05D007259 ORTHO05D009158 5.5e-76 287.7 165 77.0
TPR.G23079 Trifolium pratense HOM05D007259 ORTHO05D009158 7.2e-76 287.3 165 76.4
Sabra01G0030500 Salix brachista HOM05D007259 ORTHO05D009158 9.4e-76 287.0 165 78.8
BcaC03g15926 Brassica carinata HOM05D007259 ORTHO05D009158 1.2e-75 286.6 165 76.4
BolC2t09700H Brassica oleracea HOM05D007259 ORTHO05D009158 1.2e-75 286.6 165 76.4
Duzib235G0063 Durio zibethinus HOM05D007259 ORTHO05D009158 1.2e-75 286.6 165 77.6
FvH4_6g28630 Fragaria vesca HOM05D007259 ORTHO05D009158 1.2e-75 286.6 165 77.6
FAN14G4954 Fragaria x ananassa HOM05D007259 ORTHO05D009158 1.2e-75 286.6 165 77.6
Medtr4g007095 Medicago truncatula HOM05D007259 ORTHO05D009158 1.2e-75 286.6 165 76.4
C02p36870 Brassica napus HOM05D007259 ORTHO05D009158 2.7e-75 285.4 165 75.8
CSS0004525 Camellia sinensis var. sinensis HOM05D007259 ORTHO05D009158 2.7e-75 285.4 163 77.9
Gohir.A06G114200 Gossypium hirsutum HOM05D007259 ORTHO05D009158 2.7e-75 285.4 165 76.4
HanXRQChr05g0153761 Helianthus annuus HOM05D007259 ORTHO05D009158 3.6e-75 285.0 165 75.8
PSO017G0751 Papaver somniferum HOM05D007259 ORTHO05D009158 3.6e-75 285.0 166 77.1
Thecc.06G041800 Theobroma cacao HOM05D007259 ORTHO05D009158 4.7e-75 284.6 165 77.6
Ah.01g006970 Amaranthus hybridus HOM05D007259 ORTHO05D009158 1.0e-74 283.5 162 76.5
A02p23100 Brassica napus HOM05D007259 ORTHO05D009158 1.0e-74 283.5 165 75.8
BraA02t07308Z Brassica rapa HOM05D007259 ORTHO05D009158 1.0e-74 283.5 165 75.8
EL10Ac9g22206 Beta vulgaris HOM05D007259 ORTHO05D009158 1.4e-74 283.1 166 76.5
Cfa001880 Carpinus fangiana HOM05D007259 ORTHO05D009158 1.4e-74 283.1 165 77.6
FAN05G5272 Fragaria x ananassa HOM05D007259 ORTHO05D009158 1.8e-74 282.7 165 76.4
VMungo0331G0163 Vigna mungo HOM05D007259 ORTHO05D009158 1.8e-74 282.7 163 74.8
Nn8g39898 Nelumbo nucifera HOM05D007259 ORTHO05D009158 2.3e-74 282.3 165 77.0
Sp5g34900 Schrenkiella parvula HOM05D007259 ORTHO05D009158 2.3e-74 282.3 165 75.8
Carub.0002s2668 Capsella rubella HOM05D007259 ORTHO05D009158 3.0e-74 282.0 165 75.8
BcaB05g25221 Brassica carinata HOM05D007259 ORTHO05D009158 4.0e-74 281.6 165 74.5
QL05p036089 Quercus lobata HOM05D007259 ORTHO05D009158 4.0e-74 281.6 166 77.1
Sc12g0008330 Simmondsia chinensis HOM05D007259 ORTHO05D009158 5.2e-74 281.2 161 75.8
Sopen06g025720 Solanum pennellii HOM05D007259 ORTHO05D009158 5.2e-74 281.2 165 76.4
ClCG10G012930 Citrullus lanatus HOM05D007259 ORTHO05D009158 1.2e-73 280.0 165 77.0
Cc04_g05120 Coffea canephora HOM05D007259 ORTHO05D009158 2.6e-73 278.9 165 75.2
Peaxi162Scf00207g00430 Petunia axillaris HOM05D007259 ORTHO05D009158 2.6e-73 278.9 165 74.5
TPR.G23090 Trifolium pratense HOM05D007259 ORTHO05D009158 2.6e-73 278.9 165 75.2
Thhalv10019243m.g Eutrema salsugineum HOM05D007259 ORTHO05D009158 3.4e-73 278.5 165 74.5
Lj3g0012869 Lotus japonicus HOM05D007259 ORTHO05D009158 3.4e-73 278.5 163 74.2
Prupe.3G098300 Prunus persica HOM05D007259 ORTHO05D009158 4.4e-73 278.1 165 76.4
AL2G40530 Arabidopsis lyrata HOM05D007259 ORTHO05D009158 5.7e-73 277.7 165 77.0
Lalb_Chr01g0012071 Lupinus albus HOM05D007259 ORTHO05D009158 5.7e-73 277.7 163 74.8
Manes.04G102300 Manihot esculenta HOM05D007259 ORTHO05D009158 1.3e-72 276.6 165 76.4
AT1G80860 Arabidopsis thaliana HOM05D007259 ORTHO05D009158 2.2e-72 275.8 165 75.2
Solyc06g068470.3 Solanum lycopersicum HOM05D007259 ORTHO05D009158 2.2e-72 275.8 165 74.5
THA.LOC104812409 Tarenaya hassleriana HOM05D007259 ORTHO05D009158 2.2e-72 275.8 165 75.8
Medtr4g007090 Medicago truncatula HOM05D007259 ORTHO05D009158 3.7e-72 275.0 165 72.1
CiPaw.01G254600 Carya illinoinensis HOM05D007259 ORTHO05D009158 6.3e-72 274.2 165 75.8
PGSC0003DMG400028490 Solanum tuberosum HOM05D007259 ORTHO05D009158 6.3e-72 274.2 165 73.9
FAN09G1653 Fragaria x ananassa HOM05D007259 ORTHO05D009158 8.3e-72 273.9 164 76.2
SGA_v2.0_scaffold26G11300 Striga asiatica HOM05D007259 ORTHO05D009158 1.1e-71 273.5 163 73.6
CsaV3_3G032790 Cucumis sativus L. HOM05D007259 ORTHO05D009158 3.1e-71 271.9 165 75.2
Oeu060130.1 Olea europaea HOM05D007259 ORTHO05D009158 3.1e-71 271.9 165 72.7
Phvul.010G161400 Phaseolus vulgaris HOM05D007259 ORTHO05D009158 4.1e-71 271.6 163 73.0
CARHR073610 Cardamine hirsuta HOM05D007259 ORTHO05D009158 5.4e-71 271.2 165 74.5
SalBow6G4962 Salvia bowleyana HOM05D007259 ORTHO05D009158 5.4e-71 271.2 164 70.7
Glyma.08G218900 Glycine max HOM05D007259 ORTHO05D009158 1.6e-70 269.6 166 72.3
Aa31LG4G1140 Aethionema arabicum HOM05D007259 ORTHO05D009158 3.5e-70 268.5 164 72.0
Migut.D01126 Erythranthe guttata HOM05D007259 ORTHO05D009158 1.0e-69 266.9 163 73.0
Sed0006537 Sechium edule HOM05D007259 ORTHO05D009158 1.0e-69 266.9 165 73.3
MSTRG.4677 Avicennia marina HOM05D007259 ORTHO05D009158 1.5e-68 263.1 165 72.1
Psat7g260280 Pisum sativum HOM05D007259 ORTHO05D009158 5.6e-68 261.2 158 73.4
MBI15_g08512_MAGBIO Magnolia biondii HOM05D007259 ORTHO05D009158 5.2e-66 254.6 162 67.9
Nitab4.5_0008962g0030 Nicotiana tabacum HOM05D007259 ORTHO05D009158 5.2e-66 254.6 144 77.8
Zm00001eb184520 Zea mays HOM05D007259 ORTHO05D009158 2.4e-63 245.7 161 69.6
Os02g0612100 Oryza sativa ssp. japonica HOM05D007259 ORTHO05D009158 3.2e-63 245.4 164 69.5
BcaB05g25224 Brassica carinata HOM05D007259 ORTHO05D009158 2.7e-62 242.3 165 69.1
unitig_60.g25615 Utricularia gibba HOM05D007259 ORTHO05D009158 7.3e-60 234.2 202 55.4
Haze_16667 Corylus avellana HOM05D007259 ORTHO05D009158 1.6e-59 233.0 262 48.5
ECA246G0776 Erigeron canadensis HOM05D007259 ORTHO05D009158 6.4e-56 221.1 126 80.2
HPP92_010735 Vanilla planifolia HOM05D007259 ORTHO05D009158 1.9e-55 219.5 156 62.8
CDE12G0386 Ceratophyllum demersum HOM05D007259 ORTHO05D009158 9.2e-55 217.2 141 67.4
SEGI_39537 Sequoiadendron giganteum HOM05D007259 ORTHO05D009158 6.0e-54 214.5 155 62.6
Potri.003G182400 Populus trichocarpa HOM05D007259 ORTHO05D009158 4.3e-52 208.4 117 79.5
AagrBONN_evm.TU.Sc2ySwM_117.1157 Anthoceros agrestis HOM05D007259 ORTHO05D009158 6.2e-51 204.5 157 59.9
SMO141G0127 Selaginella moellendorffii HOM05D007259 ORTHO05D009158 4.0e-50 201.8 159 59.7
Pp3c6_3720 Physcomitrium patens HOM05D007259 ORTHO05D009158 5.2e-50 201.4 164 59.1
DCAR_021369 Daucus carota HOM05D007259 ORTHO05D009158 6.8e-50 201.1 109 83.5
Aqoxy2G00331 Aquilegia oxysepala HOM05D001307 ORTHO05D001158 1.9e-36 156.4 91 72.5
Glyma.07G022900 Glycine max HOM05D007259 ORTHO05D009158 3.6e-35 152.1 84 78.6
MD17G1223400 Malus domestica HOM05D007259 ORTHO05D009158 1.1e-34 150.6 83 79.5
MD17G1223600 Malus domestica HOM05D007259 ORTHO05D009158 1.8e-34 149.8 83 77.1
vmacro19057 Vaccinium macrocarpon HOM05D007259 ORTHO05D009158 5.2e-34 148.3 82 79.3
ATR0739G058 Amborella trichopoda HOM05D007259 ORTHO05D009158 4.4e-33 145.2 87 74.7
Nitab4.5_0000886g0050 Nicotiana tabacum HOM05D007259 ORTHO05D009158 1.3e-32 143.7 91 69.2
FAN02G2583 Fragaria x ananassa HOM05D007259 ORTHO05D009158 2.2e-32 142.9 82 75.6
Lj5C80T7 Lonicera japonica HOM05D007259 ORTHO05D009158 3.8e-32 142.1 82 76.8
Cpa.g.sc10.78 Carica papaya HOM05D007259 ORTHO05D009158 3.2e-31 139.0 82 74.4
HPP92_010738 Vanilla planifolia HOM05D007259 ORTHO05D009158 9.6e-28 127.5 94 61.7
MELO3C026739.2 Cucumis melo HOM05D007259 ORTHO05D009158 1.6e-27 126.7 82 69.5
SalBow8G2481 Salvia bowleyana HOM05D007259 ORTHO05D009158 8.4e-16 87.8 71 63.4
COL.COLO4_26703 Corchorus olitorius HOM05D007259 ORTHO05D009158 1.9e-12 76.6 43 81.4
PRCOL_00005528 Prasinoderma coloniale HOM05D007259 ORTHO05D009158 8.4e-08 61.2 78 41.0


User provided reference genes

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