Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr10.2405 Acer truncatum HOM05D003167 ORTHO05D003929 6.7e-168 594.0 307 100.0
Thecc.05G076300 Theobroma cacao HOM05D003167 ORTHO05D003929 5.1e-83 312.0 428 49.8
Duzib093G1992 Durio zibethinus HOM05D003167 ORTHO05D003929 6.7e-83 311.6 408 50.2
RcHm_v2.0_Chr3g0471451 Rosa chinensis HOM05D003167 ORTHO05D003929 1.3e-81 307.4 410 50.0
FAN14G2907 Fragaria x ananassa HOM05D003167 ORTHO05D003929 2.8e-81 306.2 410 50.2
FvH4_6g17312 Fragaria vesca HOM05D003167 ORTHO05D003929 3.7e-81 305.8 410 50.2
Lj3C1008T14 Lonicera japonica HOM05D003167 ORTHO05D003929 4.8e-81 305.4 424 49.5
Lj1g0005916 Lotus japonicus HOM05D003167 ORTHO05D003929 4.8e-81 305.4 411 49.9
FAN02G2003 Fragaria x ananassa HOM05D003167 ORTHO05D003929 6.2e-81 305.1 406 50.5
Gohir.A04G067800 Gossypium hirsutum HOM05D003167 ORTHO05D003929 6.2e-81 305.1 410 49.3
Hma1.2p1_0564F.1_g179130 Hydrangea macrophylla HOM05D003167 ORTHO05D003929 6.2e-81 305.1 431 48.7
GSVIVG01033725001 Vitis vinifera HOM05D003167 ORTHO05D003929 8.1e-81 304.7 407 49.1
Ca_08942_v3 Cicer arietinum L. HOM05D003167 ORTHO05D003929 1.1e-80 304.3 415 49.6
Gohir.D04G106400 Gossypium hirsutum HOM05D003167 ORTHO05D003929 1.1e-80 304.3 429 48.5
Atru.chr8.1695 Acer truncatum HOM05D003167 ORTHO05D003929 2.4e-80 303.1 419 50.6
CiPaw.10G002600 Carya illinoinensis HOM05D003167 ORTHO05D003929 3.1e-80 302.8 427 48.7
arahy.Tifrunner.gnm1.ann1.P92TZX Arachis hypogaea HOM05D003167 ORTHO05D003929 5.3e-80 302.0 409 49.1
arahy.Tifrunner.gnm1.ann1.WY8M22 Arachis hypogaea HOM05D003167 ORTHO05D003929 5.3e-80 302.0 409 49.1
Cfa016494 Carpinus fangiana HOM05D003167 ORTHO05D003929 6.9e-80 301.6 410 49.3
Cc00_g14960 Coffea canephora HOM05D003167 ORTHO05D003929 2.0e-79 300.1 435 46.7
Manes.08G017200 Manihot esculenta HOM05D003167 ORTHO05D003929 2.6e-79 299.7 411 49.6
Actinidia26630 Actinidia chinensis HOM05D003167 ORTHO05D003929 5.8e-79 298.5 413 47.7
Gorai.009G410400 Gossypium raimondii HOM05D003167 ORTHO05D003929 5.8e-79 298.5 411 48.9
Medtr7g102700 Medicago truncatula HOM05D003167 ORTHO05D003929 5.8e-79 298.5 415 48.4
Phvul.001G184000 Phaseolus vulgaris HOM05D003167 ORTHO05D003929 1.0e-78 297.7 413 48.4
Haze_19497 Corylus avellana HOM05D003167 ORTHO05D003929 1.3e-78 297.4 410 49.0
DCAR_020795 Daucus carota HOM05D003167 ORTHO05D003929 1.7e-78 297.0 412 47.8
vmacro07353 Vaccinium macrocarpon HOM05D003167 ORTHO05D003929 4.9e-78 295.4 408 47.8
Prupe.7G122300 Prunus persica HOM05D003167 ORTHO05D003929 1.4e-77 293.9 361 52.4
VMungo1383G0302 Vigna mungo HOM05D003167 ORTHO05D003929 3.2e-77 292.7 408 47.5
Potri.006G118700 Populus trichocarpa HOM05D003167 ORTHO05D003929 7.1e-77 291.6 360 51.4
MSTRG.21603 Avicennia marina HOM05D003167 ORTHO05D003929 1.6e-76 290.4 399 48.1
TAR623G0013 Trochodendron aralioides HOM05D003167 ORTHO05D003929 2.1e-76 290.0 415 47.2
Peaxi162Scf00732g00028 Petunia axillaris HOM05D003167 ORTHO05D003929 6.0e-76 288.5 420 46.7
Rhsim03G0085500 Rhododendron simsii HOM05D003167 ORTHO05D003929 6.0e-76 288.5 422 46.7
ClCG10G019590 Citrullus lanatus HOM05D003167 ORTHO05D003929 7.9e-76 288.1 412 48.1
TPR.G31678 Trifolium pratense HOM05D003167 ORTHO05D003929 7.9e-76 288.1 415 47.5
HanXRQChr11g0325191 Helianthus annuus HOM05D003167 ORTHO05D003929 1.0e-75 287.7 361 50.4
MD14G1096200 Malus domestica HOM05D003167 ORTHO05D003929 1.0e-75 287.7 424 46.7
Psat6g078080 Pisum sativum HOM05D003167 ORTHO05D003929 1.3e-75 287.3 363 51.2
Lsat_1_v5_gn_2_23140 Lactuca sativa HOM05D003167 ORTHO05D003929 6.7e-75 285.0 412 46.6
CSS0014862 Camellia sinensis var. sinensis HOM05D003167 ORTHO05D003929 8.7e-75 284.6 419 46.3
CSS0043785 Camellia sinensis var. sinensis HOM05D003167 ORTHO05D003929 8.7e-75 284.6 419 46.3
Ciclev10011207m.g Citrus clementina HOM05D003167 ORTHO05D003929 8.7e-75 284.6 408 48.8
Aqoxy1G01021 Aquilegia oxysepala HOM05D003167 ORTHO05D003929 1.9e-74 283.5 426 46.2
CsaV3_3G036590 Cucumis sativus L. HOM05D003167 ORTHO05D003929 1.9e-74 283.5 364 51.1
Sabra06G0093300 Salix brachista HOM05D003167 ORTHO05D003929 1.9e-74 283.5 435 46.7
Glyma.19G188800 Glycine max HOM05D003167 ORTHO05D003929 5.7e-74 282.0 408 46.8
MELO3C009413.2 Cucumis melo HOM05D003167 ORTHO05D003929 7.4e-74 281.6 463 44.5
SGA_v2.0_scaffold312G48279 Striga asiatica HOM05D003167 ORTHO05D003929 9.6e-74 281.2 350 52.3
Sed0027110 Sechium edule HOM05D003167 ORTHO05D003929 1.3e-73 280.8 415 47.0
Glyma.03G188600 Glycine max HOM05D003167 ORTHO05D003929 2.1e-73 280.0 410 46.8
Lalb_Chr21g0315291 Lupinus albus HOM05D003167 ORTHO05D003929 2.1e-73 280.0 411 47.2
THA.LOC104816364 Tarenaya hassleriana HOM05D003167 ORTHO05D003929 3.7e-73 279.3 423 44.4
BcaC05g24486 Brassica carinata HOM05D003167 ORTHO05D003929 4.8e-73 278.9 363 49.0
Medtr1g061860 Medicago truncatula HOM05D003167 ORTHO05D003929 6.3e-73 278.5 414 45.9
Aqoxy1G01022 Aquilegia oxysepala HOM05D003167 ORTHO05D003929 8.2e-73 278.1 414 46.9
Dinv35839 Davidia involucrata HOM05D003167 ORTHO05D003929 8.2e-73 278.1 412 45.9
Migut.G00710 Erythranthe guttata HOM05D003167 ORTHO05D003929 8.2e-73 278.1 412 45.6
Thhalv10006994m.g Eutrema salsugineum HOM05D003167 ORTHO05D003929 8.2e-73 278.1 366 49.2
EL10Ac7g16722 Beta vulgaris HOM05D003167 ORTHO05D003929 1.8e-72 276.9 408 45.1
ECA238G2918 Erigeron canadensis HOM05D003167 ORTHO05D003929 1.8e-72 276.9 364 49.2
CANSAT80G1311 Cannabis sativa HOM05D003167 ORTHO05D003929 2.4e-72 276.6 411 46.0
FAN05G3544 Fragaria x ananassa HOM05D003167 ORTHO05D003929 3.1e-72 276.2 461 44.3
FAN05G3981 Fragaria x ananassa HOM05D003167 ORTHO05D003929 3.1e-72 276.2 461 44.3
COL.COLO4_22264 Corchorus olitorius HOM05D003167 ORTHO05D003929 5.3e-72 275.4 412 46.6
BolC8t52784H Brassica oleracea HOM05D003167 ORTHO05D003929 3.4e-71 272.7 370 48.1
A09p68130 Brassica napus HOM05D003167 ORTHO05D003929 5.9e-71 271.9 370 48.1
C08p52570 Brassica napus HOM05D003167 ORTHO05D003929 5.9e-71 271.9 370 48.1
Thecc.06G013600 Theobroma cacao HOM05D003167 ORTHO05D003929 7.6e-71 271.6 395 48.1
ATR0724G050 Amborella trichopoda HOM05D003167 ORTHO05D003929 1.0e-70 271.2 426 44.4
C05p02250 Brassica napus HOM05D003167 ORTHO05D003929 1.0e-70 271.2 365 47.9
BolC5t29003H Brassica oleracea HOM05D003167 ORTHO05D003929 1.0e-70 271.2 365 47.9
Eucgr.K02416 Eucalyptus grandis HOM05D003167 ORTHO05D003929 1.0e-70 271.2 360 49.2
Lalb_Chr25g0288761 Lupinus albus HOM05D003167 ORTHO05D003929 1.7e-70 270.4 398 47.7
TAR636G1269 Trochodendron aralioides HOM05D003167 ORTHO05D003929 2.2e-70 270.0 409 44.5
Sp1g02770 Schrenkiella parvula HOM05D003167 ORTHO05D003929 2.9e-70 269.6 406 44.8
Aa31LG1G9100 Aethionema arabicum HOM05D003167 ORTHO05D003929 6.5e-70 268.5 398 45.2
QL07p041296 Quercus lobata HOM05D003167 ORTHO05D003929 6.5e-70 268.5 404 45.8
SHI27742 Sapria himalayana HOM05D003167 ORTHO05D003929 6.5e-70 268.5 419 41.5
TPR.G27088 Trifolium pratense HOM05D003167 ORTHO05D003929 8.5e-70 268.1 363 49.0
Zm00001eb061170 Zea mays HOM05D003167 ORTHO05D003929 3.2e-69 266.2 426 43.0
PSO339G0841 Papaver somniferum HOM05D003167 ORTHO05D003929 4.2e-69 265.8 413 44.8
HPP92_017793 Vanilla planifolia HOM05D003167 ORTHO05D003929 4.2e-69 265.8 415 44.1
Hund04098 Selenicereus undatus HOM05D003167 ORTHO05D003929 9.3e-69 264.6 416 45.0
PGR142G4079 Punica granatum HOM05D003167 ORTHO05D003929 2.1e-68 263.5 348 48.0
VMungo0720G2588 Vigna mungo HOM05D003167 ORTHO05D003929 2.7e-68 263.1 415 44.3
SalBow8G3947 Salvia bowleyana HOM05D003167 ORTHO05D003929 3.6e-68 262.7 418 45.2
Sc01g0003900 Simmondsia chinensis HOM05D003167 ORTHO05D003929 3.6e-68 262.7 416 45.0
Lj8P306T56 Lonicera japonica HOM05D003167 ORTHO05D003929 6.1e-68 261.9 421 43.0
Os03g0800100 Oryza sativa ssp. japonica HOM05D003167 ORTHO05D003929 6.1e-68 261.9 294 53.7
Mapoly0001s0156 Marchantia polymorpha HOM05D003167 ORTHO05D003929 7.9e-68 261.5 286 53.1
Peaxi162Scf01089g10011 Petunia axillaris HOM05D003167 ORTHO05D003929 1.0e-67 261.2 422 42.9
SalBow8G1467 Salvia bowleyana HOM05D003167 ORTHO05D003929 2.3e-67 260.0 433 44.3
Psat3g037760 Pisum sativum HOM05D003167 ORTHO05D003929 3.9e-67 259.2 329 51.7
Atru.chr10.1911 Acer truncatum HOM05D003167 ORTHO05D003929 1.1e-66 257.7 243 63.0
CDE04G1328 Ceratophyllum demersum HOM05D003167 ORTHO05D003929 1.5e-66 257.3 293 51.9
Glyma.13G148300 Glycine max HOM05D003167 ORTHO05D003929 1.9e-66 256.9 329 49.8
Solyc10g085410.3 Solanum lycopersicum HOM05D003167 ORTHO05D003929 5.7e-66 255.4 418 42.3
Sopen10g034860 Solanum pennellii HOM05D003167 ORTHO05D003929 5.7e-66 255.4 372 45.2
PGSC0003DMG400040194 Solanum tuberosum HOM05D003167 ORTHO05D003929 5.7e-66 255.4 372 44.9
BcaC07g42222 Brassica carinata HOM05D003167 ORTHO05D003929 1.3e-65 254.2 359 47.1
AT1G03910 Arabidopsis thaliana HOM05D003167 ORTHO05D003929 2.2e-65 253.4 407 43.5
AL1G13510 Arabidopsis lyrata HOM05D003167 ORTHO05D003929 4.8e-65 252.3 406 43.8
A10p02430 Brassica napus HOM05D003167 ORTHO05D003929 4.8e-65 252.3 365 46.0
BraA09t42148Z Brassica rapa HOM05D003167 ORTHO05D003929 1.1e-64 251.1 415 42.9
Nitab4.5_0002027g0020 Nicotiana tabacum HOM05D003167 ORTHO05D003929 6.9e-64 248.4 417 41.7
Cpa.g.sc5.120 Carica papaya HOM05D003167 ORTHO05D003929 9.1e-64 248.1 414 43.2
AagrBONN_evm.TU.Sc2ySwM_344.2239 Anthoceros agrestis HOM05D003167 ORTHO05D003929 2.0e-63 246.9 407 42.3
AUR62040188 Chenopodium quinoa HOM05D003167 ORTHO05D003929 2.0e-63 246.9 401 43.1
AL4G33010 Arabidopsis lyrata HOM05D003167 ORTHO05D003929 2.6e-63 246.5 381 43.3
CAN.G738.3 Capsicum annuum HOM05D003167 ORTHO05D003929 1.3e-62 244.2 370 44.6
Carub.0004s1866 Capsella rubella HOM05D003167 ORTHO05D003929 1.9e-61 240.4 416 41.1
AUR62042696 Chenopodium quinoa HOM05D003167 ORTHO05D003929 1.9e-61 240.4 401 42.4
CARHR131270 Cardamine hirsuta HOM05D003167 ORTHO05D003929 3.2e-61 239.6 342 43.6
unitig_578.g16659 Utricularia gibba HOM05D003167 ORTHO05D003929 4.2e-61 239.2 409 40.8
Carub.0001s0306 Capsella rubella HOM05D003167 ORTHO05D003929 3.6e-60 236.1 236 56.4
PSO210G0575 Papaver somniferum HOM05D003167 ORTHO05D003929 1.1e-58 231.1 285 49.1
COL.COLO4_17620 Corchorus olitorius HOM05D003167 ORTHO05D003929 4.4e-58 229.2 407 40.5
Pp3c27_420 Physcomitrium patens HOM05D003167 ORTHO05D003929 8.2e-57 224.9 410 39.0
Cc10_g12700 Coffea canephora HOM05D003167 ORTHO05D003929 1.8e-56 223.8 294 48.3
Thecc.08G192100 Theobroma cacao HOM05D003167 ORTHO05D003929 3.4e-55 219.5 241 56.8
AUR62007183 Chenopodium quinoa HOM05D003167 ORTHO05D003929 6.1e-52 208.8 365 40.5
SMO169G0108 Selaginella moellendorffii HOM05D003167 ORTHO05D003929 3.0e-51 206.5 398 39.2
CBR_g4119 Chara braunii HOM05D003167 ORTHO05D003929 3.9e-51 206.1 366 39.6
ECA232G4802 Erigeron canadensis HOM05D003167 ORTHO05D003929 9.7e-50 201.4 206 54.4
PGR083G2067 Punica granatum HOM05D003167 ORTHO05D003929 3.7e-49 199.5 338 40.8
CARHR003240 Cardamine hirsuta HOM05D003167 ORTHO05D003929 2.6e-47 193.4 209 55.0
Cc00_g14970 Coffea canephora HOM05D003167 ORTHO05D003929 1.3e-46 191.0 277 44.4
Ah.15g091330 Amaranthus hybridus HOM05D003167 ORTHO05D003929 6.5e-46 188.7 208 52.4
AUR62007182 Chenopodium quinoa HOM05D003167 ORTHO05D003929 2.5e-45 186.8 305 41.6
Oeu005667.1 Olea europaea HOM05D003167 ORTHO05D003929 9.4e-45 184.9 163 62.6
EL10Ac3g06890 Beta vulgaris HOM05D003167 ORTHO05D003929 4.0e-43 179.5 363 38.8
SEGI_24622 Sequoiadendron giganteum HOM05D003167 ORTHO05D003929 1.8e-40 170.6 125 71.2
FAN26G0867 Fragaria x ananassa HOM05D003167 ORTHO05D003929 3.5e-39 166.4 372 37.9
FAN26G2184 Fragaria x ananassa HOM05D003167 ORTHO05D003929 1.3e-38 164.5 372 38.4
FAN23G0551 Fragaria x ananassa HOM05D003167 ORTHO05D003929 2.9e-38 163.3 372 38.4
FAN28G1035 Fragaria x ananassa HOM05D003167 ORTHO05D003929 1.5e-37 161.0 366 39.3
FvH4_1g06450 Fragaria vesca HOM05D003167 ORTHO05D003929 5.5e-37 159.1 387 37.7
Lj2g0005784 Lotus japonicus HOM05D003167 ORTHO05D003929 7.2e-37 158.7 205 47.3
AUR62018820 Chenopodium quinoa HOM05D003167 ORTHO05D003929 1.2e-36 157.9 343 37.3
FAN19G3088 Fragaria x ananassa HOM05D003167 ORTHO05D003929 2.7e-36 156.8 387 37.5
RcHm_v2.0_Chr2g0092191 Rosa chinensis HOM05D003167 ORTHO05D003929 6.8e-35 152.1 386 37.0
Aqoxy3G01485 Aquilegia oxysepala HOM05D003167 ORTHO05D003929 1.3e-33 147.9 209 42.1
CARHR131200 Cardamine hirsuta HOM05D003167 ORTHO05D003929 2.2e-33 147.1 148 49.3
Eucgr.D02277 Eucalyptus grandis HOM05D003167 ORTHO05D003929 1.1e-32 144.8 327 36.1
SMO364G0524 Selaginella moellendorffii HOM05D003167 ORTHO05D003929 1.1e-32 144.8 287 37.6
Zm00001eb032700 Zea mays HOM05D003167 ORTHO05D003929 3.1e-32 143.3 273 38.8
Hma1.2p1_0033F.1_g020920 Hydrangea macrophylla HOM05D003167 ORTHO05D003929 3.2e-29 133.3 133 53.4
MD12G1102100 Malus domestica HOM05D003167 ORTHO05D003929 6.1e-28 129.0 223 42.6
Cc07_g17880 Coffea canephora HOM05D003167 ORTHO05D003929 1.4e-27 127.9 169 47.3
Hma1.2p1_2996F.1_g331470 Hydrangea macrophylla HOM05D003167 ORTHO05D003929 1.4e-27 127.9 163 47.2
FAN05G5009 Fragaria x ananassa HOM05D003167 ORTHO05D003929 8.8e-27 125.2 256 38.7
AUR62022074 Chenopodium quinoa HOM05D003167 ORTHO05D003929 3.4e-26 123.2 288 36.5
Cc04_g07780 Coffea canephora HOM05D003167 ORTHO05D003929 9.8e-26 121.7 140 45.7
MD12G1102200 Malus domestica HOM05D003167 ORTHO05D003929 2.4e-24 117.1 90 68.9
AUR62009153 Chenopodium quinoa HOM05D003167 ORTHO05D003929 1.7e-22 110.9 278 34.9
Hma1.2p1_0033F.1_g020940 Hydrangea macrophylla HOM05D003167 ORTHO05D023710 7.3e-21 105.5 105 54.3
PRCOL_00002534 Prasinoderma coloniale HOM05D003167 ORTHO05D003929 1.6e-20 104.4 246 31.7
Zm00001eb382350 Zea mays HOM05D003167 ORTHO05D003929 4.7e-20 102.8 78 69.2
AUR62022073 Chenopodium quinoa HOM05D003167 ORTHO05D003929 3.0e-19 100.1 284 32.7
Nitab4.5_0000883g0030 Nicotiana tabacum HOM05D003167 ORTHO05D023710 2.9e-17 93.6 207 34.8
Potri.001G242900 Populus trichocarpa HOM05D003167 ORTHO05D003929 3.7e-17 93.2 144 43.1
Ah.15g091340 Amaranthus hybridus HOM05D003167 ORTHO05D003929 2.4e-16 90.5 198 38.4
CARHR003250 Cardamine hirsuta HOM05D003167 ORTHO05D003929 1.0e-14 85.1 209 34.9
Cre09.g398650 Chlamydomonas reinhardtii HOM05D003167 ORTHO05D003929 1.7e-14 84.3 173 32.4
FAN09G3561 Fragaria x ananassa HOM05D003167 ORTHO05D030899 1.6e-12 77.8 187 37.4
Ciclev10013400m.g Citrus clementina HOM05D003167 ORTHO05D151884 2.3e-11 73.9 110 42.7
Nitab4.5_0007768g0050 Nicotiana tabacum HOM05D003167 ORTHO05D003929 2.3e-11 73.9 77 49.4
RcHm_v2.0_Chr5g0072821 Rosa chinensis HOM05D003167 ORTHO05D003929 2.0e-10 70.9 49 69.4
Cfa022090 Carpinus fangiana HOM05D003167 ORTHO05D003929 4.9e-09 66.2 160 27.5
Zm00001eb237870 Zea mays HOM05D005975 ORTHO05D007373 4.9e-09 66.2 242 30.2
SEGI_34935 Sequoiadendron giganteum HOM05D003167 ORTHO05D003929 5.4e-08 62.8 74 50.0
Zm00001eb017020 Zea mays HOM05D003167 ORTHO05D023710 2.0e-07 60.8 78 48.7
Aqoxy3G01613 Aquilegia oxysepala HOM05D003167 ORTHO05D000007 7.8e-07 58.9 112 37.5
RcHm_v2.0_Chr3g0471601 Rosa chinensis HOM05D003167 ORTHO05D030899 7.8e-07 58.9 158 33.5
Os04g0558200 Oryza sativa ssp. japonica HOM05D003167 ORTHO05D003929 1.7e-06 57.8 242 25.2
Nitab4.5_0000883g0050 Nicotiana tabacum HOM05D003167 ORTHO05D003929 3.9e-06 56.6 68 51.5
Oeu027192.1 Olea europaea HOM05D003167 ORTHO05D003929 5.0e-06 56.2 134 33.6


User provided reference genes

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