Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr10.2376 Acer truncatum HOM05D001826 ORTHO05D018157 3.0e-67 258.5 139 100.0
Atru.chr5.450 Acer truncatum HOM05D001826 ORTHO05D004184 5.0e-46 188.0 174 66.7
CiPaw.02G028500 Carya illinoinensis HOM05D001826 ORTHO05D004184 7.8e-31 137.5 120 64.2
Ciclev10018563m.g Citrus clementina HOM05D001826 ORTHO05D004184 6.6e-30 134.4 155 56.1
Manes.05G037400 Manihot esculenta HOM05D001826 ORTHO05D004184 2.5e-29 132.5 119 67.2
Actinidia33430 Actinidia chinensis HOM05D001826 ORTHO05D004184 3.3e-29 132.1 114 68.4
Haze_15465 Corylus avellana HOM05D001826 ORTHO05D004184 3.3e-29 132.1 120 62.5
THA.LOC104801451 Tarenaya hassleriana HOM05D001826 ORTHO05D004184 3.3e-29 132.1 120 67.5
MD01G1053700 Malus domestica HOM05D001826 ORTHO05D004184 4.3e-29 131.7 146 56.2
CSS0017008 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D004184 5.6e-29 131.3 115 66.1
QL08p049532 Quercus lobata HOM05D001826 ORTHO05D004184 7.3e-29 131.0 140 57.1
CSS0033058 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D004184 1.6e-28 129.8 115 65.2
CSS0031422 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D004184 2.8e-28 129.0 141 56.0
Cpa.g.sc18.224 Carica papaya HOM05D001826 ORTHO05D004184 2.8e-28 129.0 167 50.3
MD07G1141400 Malus domestica HOM05D001826 ORTHO05D004184 2.8e-28 129.0 118 63.6
Oeu014675.3 Olea europaea HOM05D001826 ORTHO05D004184 4.7e-28 128.3 127 59.8
RhsimUnG0002100 Rhododendron simsii HOM05D001826 ORTHO05D004184 4.7e-28 128.3 122 63.9
Thecc.01G363300 Theobroma cacao HOM05D001826 ORTHO05D004184 8.1e-28 127.5 128 60.2
Dinv32450 Davidia involucrata HOM05D001826 ORTHO05D018157 1.4e-27 126.7 129 58.1
ClCG05G001700 Citrullus lanatus HOM05D001826 ORTHO05D004184 3.1e-27 125.6 125 60.0
Prupe.2G162700 Prunus persica HOM05D001826 ORTHO05D004184 3.1e-27 125.6 105 68.6
TWI23G0863 Tripterygium wilfordii HOM05D001826 ORTHO05D004184 3.1e-27 125.6 121 62.0
Carub.0006s3656 Capsella rubella HOM05D001826 ORTHO05D004184 4.0e-27 125.2 119 66.4
CARHR248780 Cardamine hirsuta HOM05D001826 ORTHO05D004184 5.2e-27 124.8 119 63.9
MELO3C006129.2 Cucumis melo HOM05D001826 ORTHO05D004184 5.2e-27 124.8 114 64.0
Duzib138G1216 Durio zibethinus HOM05D001826 ORTHO05D004184 6.8e-27 124.4 130 56.9
AL6G52810 Arabidopsis lyrata HOM05D001826 ORTHO05D004184 8.9e-27 124.0 105 70.5
MSTRG.4866 Avicennia marina HOM05D001826 ORTHO05D004184 8.9e-27 124.0 138 52.9
FvH4_7g13660 Fragaria vesca HOM05D001826 ORTHO05D004184 8.9e-27 124.0 137 58.4
COL.COLO4_12675 Corchorus olitorius HOM05D001826 ORTHO05D004184 1.2e-26 123.6 113 64.6
Oeu004525.1 Olea europaea HOM05D001826 ORTHO05D004184 1.2e-26 123.6 127 57.5
FAN01G1586 Fragaria x ananassa HOM05D001826 ORTHO05D004184 1.5e-26 123.2 137 57.7
vmacro20955 Vaccinium macrocarpon HOM05D001826 ORTHO05D004184 1.5e-26 123.2 129 58.9
Eucgr.E00180 Eucalyptus grandis HOM05D001826 ORTHO05D004184 2.0e-26 122.9 110 64.5
FAN03G3317 Fragaria x ananassa HOM05D001826 ORTHO05D004184 3.4e-26 122.1 126 59.5
Sed0005198 Sechium edule HOM05D001826 ORTHO05D004184 3.4e-26 122.1 133 57.9
AT4G00630 Arabidopsis thaliana HOM05D001826 ORTHO05D004184 4.4e-26 121.7 105 70.5
TWI59G0720 Tripterygium wilfordii HOM05D001826 ORTHO05D004184 4.4e-26 121.7 118 58.5
TWI59G1454 Tripterygium wilfordii HOM05D001826 ORTHO05D004184 4.4e-26 121.7 118 58.5
CiPaw.01G057800 Carya illinoinensis HOM05D001826 ORTHO05D004184 5.8e-26 121.3 120 62.5
SGA_v2.0_scaffold277G46674 Striga asiatica HOM05D001826 ORTHO05D004184 7.6e-26 120.9 115 59.1
Gohir.D12G108900 Gossypium hirsutum HOM05D001826 ORTHO05D004184 9.9e-26 120.6 131 57.3
PGR042G0308 Punica granatum HOM05D001826 ORTHO05D004184 9.9e-26 120.6 134 61.2
Sed0024442 Sechium edule HOM05D001826 ORTHO05D004184 9.9e-26 120.6 108 65.7
Gorai.008G118000 Gossypium raimondii HOM05D001826 ORTHO05D004184 1.7e-25 119.8 131 57.3
FAN10G1065 Fragaria x ananassa HOM05D001826 ORTHO05D004184 2.2e-25 119.4 137 56.9
CsaV3_3G009090 Cucumis sativus L. HOM05D001826 ORTHO05D004184 2.9e-25 119.0 114 62.3
Nitab4.5_0001620g0100 Nicotiana tabacum HOM05D001826 ORTHO05D004184 2.9e-25 119.0 107 64.5
Peaxi162Scf00397g00111 Petunia axillaris HOM05D001826 ORTHO05D004184 3.7e-25 118.6 107 62.6
Actinidia12714 Actinidia chinensis HOM05D001826 ORTHO05D004184 4.9e-25 118.2 107 66.4
Gohir.A12G105000 Gossypium hirsutum HOM05D001826 ORTHO05D004184 4.9e-25 118.2 113 61.9
Nn6g33530 Nelumbo nucifera HOM05D001826 ORTHO05D004184 4.9e-25 118.2 115 58.3
Aa31LG5G380 Aethionema arabicum HOM05D001826 ORTHO05D004184 6.4e-25 117.9 113 65.5
Nitab4.5_0003111g0100 Nicotiana tabacum HOM05D001826 ORTHO05D004184 8.4e-25 117.5 107 63.6
AL1G10550 Arabidopsis lyrata HOM05D001826 ORTHO05D004184 1.1e-24 117.1 137 56.2
BcaB03g13614 Brassica carinata HOM05D001826 ORTHO05D018157 1.4e-24 116.7 119 60.5
DCAR_006915 Daucus carota HOM05D001826 ORTHO05D004184 1.4e-24 116.7 147 52.4
A10p00260 Brassica napus HOM05D001826 ORTHO05D004184 1.9e-24 116.3 130 56.2
Aa31LG1G11160 Aethionema arabicum HOM05D001826 ORTHO05D004184 2.4e-24 115.9 116 62.9
CANSAT56G1923 Cannabis sativa HOM05D001826 ORTHO05D004184 2.4e-24 115.9 106 66.0
CSS0034842 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D004184 4.1e-24 115.2 123 57.7
RcHm_v2.0_Chr1g0353741 Rosa chinensis HOM05D001826 ORTHO05D004184 4.1e-24 115.2 128 55.5
Thhalv10006607m.g Eutrema salsugineum HOM05D001826 ORTHO05D004184 5.4e-24 114.8 119 63.0
TAR374G0002 Trochodendron aralioides HOM05D001826 ORTHO05D004184 5.4e-24 114.8 123 57.7
Sabra14G0058600 Salix brachista HOM05D001826 ORTHO05D004184 9.2e-24 114.0 112 59.8
TAR375G0082 Trochodendron aralioides HOM05D001826 ORTHO05D004184 9.2e-24 114.0 114 58.8
BcaB03g13616 Brassica carinata HOM05D001826 ORTHO05D004184 1.2e-23 113.6 151 51.0
BraA10t42302Z Brassica rapa HOM05D001826 ORTHO05D004184 1.2e-23 113.6 119 58.8
ECA236G3271 Erigeron canadensis HOM05D001826 ORTHO05D004184 1.2e-23 113.6 123 56.9
C05p00270 Brassica napus HOM05D001826 ORTHO05D004184 1.6e-23 113.2 121 57.9
BolC5t28817H Brassica oleracea HOM05D001826 ORTHO05D004184 1.6e-23 113.2 121 57.9
Thhalv10006595m.g Eutrema salsugineum HOM05D001826 ORTHO05D004184 1.6e-23 113.2 131 57.3
Psat4g153760 Pisum sativum HOM05D001826 ORTHO05D004184 1.6e-23 113.2 113 58.4
Sc18g0003430 Simmondsia chinensis HOM05D001826 ORTHO05D004184 1.6e-23 113.2 104 63.5
Solyc01g094290.3 Solanum lycopersicum HOM05D001826 ORTHO05D004184 1.6e-23 113.2 121 57.9
Sopen01g038090 Solanum pennellii HOM05D001826 ORTHO05D004184 1.6e-23 113.2 121 57.9
Sp1g00500 Schrenkiella parvula HOM05D001826 ORTHO05D004184 2.1e-23 112.8 120 61.7
CDE06G2718 Ceratophyllum demersum HOM05D001826 ORTHO05D018157 2.7e-23 112.5 138 51.4
Ca_23666_v3 Cicer arietinum L. HOM05D001826 ORTHO05D004184 2.7e-23 112.5 106 60.4
Lj7A516T61 Lonicera japonica HOM05D001826 ORTHO05D004184 2.7e-23 112.5 122 55.7
Lj9C580G11 Lonicera japonica HOM05D001826 ORTHO05D004184 2.7e-23 112.5 116 60.3
Lsat_1_v5_gn_7_5161 Lactuca sativa HOM05D001826 ORTHO05D004184 3.5e-23 112.1 103 64.1
SalBow3G1103 Salvia bowleyana HOM05D001826 ORTHO05D004184 3.5e-23 112.1 116 55.2
arahy.Tifrunner.gnm1.ann1.8F4Z70 Arachis hypogaea HOM05D001826 ORTHO05D004184 4.6e-23 111.7 119 57.1
arahy.Tifrunner.gnm1.ann1.SLD8LW Arachis hypogaea HOM05D001826 ORTHO05D004184 4.6e-23 111.7 119 57.1
CAN.G78.31 Capsicum annuum HOM05D001826 ORTHO05D004184 4.6e-23 111.7 108 59.3
ECA240G3725 Erigeron canadensis HOM05D001826 ORTHO05D004184 4.6e-23 111.7 104 63.5
Potri.002G157200 Populus trichocarpa HOM05D001826 ORTHO05D004184 6.0e-23 111.3 114 59.6
EL10Ac1g00529 Beta vulgaris HOM05D001826 ORTHO05D004184 1.0e-22 110.5 104 63.5
AUR62033325 Chenopodium quinoa HOM05D001826 ORTHO05D004184 1.0e-22 110.5 135 51.9
AUR62033334 Chenopodium quinoa HOM05D001826 ORTHO05D004184 1.0e-22 110.5 135 51.9
Hma1.2p1_0001F.1_g001660 Hydrangea macrophylla HOM05D001826 ORTHO05D004184 1.3e-22 110.2 113 57.5
Gorai.001G170200 Gossypium raimondii HOM05D001826 ORTHO05D004184 1.7e-22 109.8 113 54.9
HanXRQChr06g0169881 Helianthus annuus HOM05D001826 ORTHO05D004184 1.7e-22 109.8 103 63.1
CDE04G2063 Ceratophyllum demersum HOM05D001826 ORTHO05D004184 2.3e-22 109.4 121 55.4
Actinidia20930 Actinidia chinensis HOM05D001826 ORTHO05D004184 3.0e-22 109.0 138 48.6
AT1G01790 Arabidopsis thaliana HOM05D001826 ORTHO05D004184 3.0e-22 109.0 103 66.0
Medtr8g031550 Medicago truncatula HOM05D001826 ORTHO05D004184 3.0e-22 109.0 113 57.5
A10p00230 Brassica napus HOM05D001826 ORTHO05D004184 3.9e-22 108.6 122 54.9
C05p00260 Brassica napus HOM05D001826 ORTHO05D004184 3.9e-22 108.6 122 55.7
BolC5t28815H Brassica oleracea HOM05D001826 ORTHO05D004184 3.9e-22 108.6 122 55.7
BraA09t42264Z Brassica rapa HOM05D001826 ORTHO05D004184 3.9e-22 108.6 120 58.3
CARHR000530 Cardamine hirsuta HOM05D001826 ORTHO05D004184 3.9e-22 108.6 116 58.6
Glyma.09G262000 Glycine max HOM05D001826 ORTHO05D004184 3.9e-22 108.6 138 50.0
Potri.014G080800 Populus trichocarpa HOM05D001826 ORTHO05D004184 3.9e-22 108.6 100 63.0
Sp1g00490 Schrenkiella parvula HOM05D001826 ORTHO05D004184 5.1e-22 108.2 122 59.8
BcaB03g13615 Brassica carinata HOM05D001826 ORTHO05D004184 6.6e-22 107.8 111 60.4
Duzib133G0016 Durio zibethinus HOM05D001826 ORTHO05D004184 6.6e-22 107.8 140 50.0
Glyma.03G014000 Glycine max HOM05D001826 ORTHO05D004184 8.6e-22 107.5 113 54.9
AUR62004319 Chenopodium quinoa HOM05D001826 ORTHO05D004184 1.1e-21 107.1 135 49.6
Lsat_1_v5_gn_3_136621 Lactuca sativa HOM05D001826 ORTHO05D004184 1.5e-21 106.7 105 58.1
arahy.Tifrunner.gnm1.ann1.42EX8Y Arachis hypogaea HOM05D001826 ORTHO05D004184 1.9e-21 106.3 127 52.8
C08p53870 Brassica napus HOM05D001826 ORTHO05D004184 1.9e-21 106.3 120 58.3
BolC8t52901H Brassica oleracea HOM05D001826 ORTHO05D004184 1.9e-21 106.3 120 58.3
arahy.Tifrunner.gnm1.ann1.253UZ6 Arachis hypogaea HOM05D001826 ORTHO05D004184 2.5e-21 105.9 127 52.8
Sabra02G0124800 Salix brachista HOM05D001826 ORTHO05D004184 2.5e-21 105.9 114 56.1
TPR.G4440 Trifolium pratense HOM05D001826 ORTHO05D004184 2.5e-21 105.9 113 55.8
MBI17_g08175_MAGBIO Magnolia biondii HOM05D005566 ORTHO05D004184 4.3e-21 105.1 104 60.6
Lj1g0018622 Lotus japonicus HOM05D001826 ORTHO05D004184 5.6e-21 104.8 120 55.0
Ca_07891_v3 Cicer arietinum L. HOM05D001826 ORTHO05D004184 9.6e-21 104.0 105 59.0
Glyma.07G073700 Glycine max HOM05D001826 ORTHO05D004184 9.6e-21 104.0 100 59.0
HanXRQChr03g0093471 Helianthus annuus HOM05D001826 ORTHO05D004184 1.2e-20 103.6 103 59.2
SalBow5G0163 Salvia bowleyana HOM05D001826 ORTHO05D004184 1.2e-20 103.6 97 59.8
Rhsim07G0018000 Rhododendron simsii HOM05D001826 ORTHO05D004184 1.6e-20 103.2 123 54.5
SalBow5G2532 Salvia bowleyana HOM05D001826 ORTHO05D004184 2.1e-20 102.8 97 59.8
Ah.05g176450 Amaranthus hybridus HOM05D001826 ORTHO05D004184 2.8e-20 102.4 118 55.1
ATR0680G345 Amborella trichopoda HOM05D001826 ORTHO05D004184 2.8e-20 102.4 96 61.5
Lj3g0020333 Lotus japonicus HOM05D001826 ORTHO05D004184 3.6e-20 102.1 111 55.9
Gohir.A08G130000 Gossypium hirsutum HOM05D001826 ORTHO05D004184 4.7e-20 101.7 112 58.0
Phvul.010G095600 Phaseolus vulgaris HOM05D001826 ORTHO05D004184 4.7e-20 101.7 106 58.5
VMungo0331G1572 Vigna mungo HOM05D001826 ORTHO05D004184 4.7e-20 101.7 94 63.8
HanXRQChr04g0121631 Helianthus annuus HOM05D001826 ORTHO05D004184 6.2e-20 101.3 107 59.8
FAN10G2518 Fragaria x ananassa HOM05D001826 ORTHO05D018157 8.1e-20 100.9 122 57.4
Phvul.010G095800 Phaseolus vulgaris HOM05D001826 ORTHO05D004184 8.1e-20 100.9 99 60.6
MSTRG.20812 Avicennia marina HOM05D001826 ORTHO05D004184 1.8e-19 99.8 107 55.1
Carub.0001s0042 Capsella rubella HOM05D001826 ORTHO05D004184 1.8e-19 99.8 92 64.1
Glyma.18G230100 Glycine max HOM05D001826 ORTHO05D004184 1.8e-19 99.8 87 66.7
Gorai.004G157200 Gossypium raimondii HOM05D001826 ORTHO05D004184 1.8e-19 99.8 112 57.1
Cc02_g37680 Coffea canephora HOM05D001826 ORTHO05D004184 2.4e-19 99.4 89 67.4
DCAR_015945 Daucus carota HOM05D001826 ORTHO05D004184 2.4e-19 99.4 102 59.8
Migut.B01724 Erythranthe guttata HOM05D001826 ORTHO05D004184 2.4e-19 99.4 103 56.3
vmacro13307 Vaccinium macrocarpon HOM05D001826 ORTHO05D004184 2.4e-19 99.4 139 46.8
vmacro13312 Vaccinium macrocarpon HOM05D001826 ORTHO05D004184 2.4e-19 99.4 120 52.5
Gohir.D08G151300 Gossypium hirsutum HOM05D001826 ORTHO05D004184 4.0e-19 98.6 112 56.2
Lalb_Chr10g0097211 Lupinus albus HOM05D001826 ORTHO05D004184 4.0e-19 98.6 95 61.1
Hund16940 Selenicereus undatus HOM05D001826 ORTHO05D004184 6.8e-19 97.8 121 52.1
PSO063G0747 Papaver somniferum HOM05D001826 ORTHO05D004184 8.9e-19 97.4 96 60.4
PSO782G0182 Papaver somniferum HOM05D001826 ORTHO05D004184 8.9e-19 97.4 98 59.2
Psat3g110880 Pisum sativum HOM05D001826 ORTHO05D004184 1.2e-18 97.1 122 51.6
TPR.G37729 Trifolium pratense HOM05D001826 ORTHO05D004184 1.2e-18 97.1 102 58.8
Aqoxy5G04023 Aquilegia oxysepala HOM05D001826 ORTHO05D004184 2.0e-18 96.3 100 55.0
Lalb_Chr19g0127041 Lupinus albus HOM05D001826 ORTHO05D004184 2.0e-18 96.3 103 56.3
HanXRQChr13g0426341 Helianthus annuus HOM05D001826 ORTHO05D004184 3.4e-18 95.5 100 58.0
Phvul.008G067800 Phaseolus vulgaris HOM05D001826 ORTHO05D004184 3.4e-18 95.5 94 60.6
Hund27301 Selenicereus undatus HOM05D001826 ORTHO05D004184 4.4e-18 95.1 110 54.5
Zm00001eb433980 Zea mays HOM05D001826 ORTHO05D004184 5.8e-18 94.7 115 52.2
DCAR_025143 Daucus carota HOM05D001826 ORTHO05D004184 1.3e-17 93.6 102 56.9
Zm00001eb065780 Zea mays HOM05D001826 ORTHO05D004184 1.7e-17 93.2 113 53.1
CDE04G1203 Ceratophyllum demersum HOM05D001826 ORTHO05D018157 5.4e-16 88.2 84 61.9
DCAR_008601 Daucus carota HOM05D001826 ORTHO05D004184 5.4e-16 88.2 111 55.0
unitig_8.g3808 Utricularia gibba HOM05D001826 ORTHO05D004184 1.2e-15 87.0 107 50.5
FAN10G2366 Fragaria x ananassa HOM05D001826 ORTHO05D018157 3.4e-10 68.9 72 61.1
Nn1g01434 Nelumbo nucifera HOM05D001826 ORTHO05D018157 1.3e-06 57.0 109 37.6


User provided reference genes

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