Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr10.2310 Acer truncatum HOM05D005176 ORTHO05D006482 1.1e-196 689.9 360 100.0
COL.COLO4_31852 Corchorus olitorius HOM05D005176 ORTHO05D006482 2.0e-131 473.0 330 73.6
Cpa.g.sc152.62 Carica papaya HOM05D005176 ORTHO05D006482 1.7e-130 469.9 328 73.5
Thecc.06G230100 Theobroma cacao HOM05D005176 ORTHO05D006482 1.1e-129 467.2 332 72.3
CSS0003829 Camellia sinensis var. sinensis HOM05D005176 ORTHO05D006482 4.2e-129 465.3 335 71.9
Hma1.2p1_0660F.1_g197450 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 1.6e-128 463.4 331 72.5
Dinv20117 Davidia involucrata HOM05D005176 ORTHO05D006482 2.7e-128 462.6 336 70.5
Rhsim13G0148600 Rhododendron simsii HOM05D005176 ORTHO05D006482 2.7e-128 462.6 331 72.5
Cfa000134 Carpinus fangiana HOM05D005176 ORTHO05D006482 4.0e-127 458.8 330 71.8
Gohir.A05G173800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 1.2e-126 457.2 332 70.5
Gorai.009G182200 Gossypium raimondii HOM05D005176 ORTHO05D006482 2.6e-126 456.1 332 70.5
Ciclev10015546m.g Citrus clementina HOM05D005176 ORTHO05D006482 5.7e-126 454.9 336 69.6
TAR626G1813 Trochodendron aralioides HOM05D005176 ORTHO05D006482 7.5e-126 454.5 342 68.7
TWI38G1933 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 2.2e-125 453.0 337 69.4
Actinidia26877 Actinidia chinensis HOM05D005176 ORTHO05D006482 3.7e-125 452.2 328 71.0
TWI63G1683 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 6.3e-125 451.4 340 69.1
MD10G1328600 Malus domestica HOM05D005176 ORTHO05D006482 1.1e-124 450.7 338 68.6
Lj1A1237T47 Lonicera japonica HOM05D005176 ORTHO05D006482 1.4e-124 450.3 329 70.5
Sabra11G0011400 Salix brachista HOM05D005176 ORTHO05D006482 1.4e-124 450.3 332 68.7
Sabra11G0013200 Salix brachista HOM05D005176 ORTHO05D006482 1.4e-124 450.3 332 68.7
PGSC0003DMG400013335 Solanum tuberosum HOM05D005176 ORTHO05D006482 1.8e-124 449.9 337 68.8
Oeu002752.3 Olea europaea HOM05D005176 ORTHO05D006482 3.1e-124 449.1 285 75.8
QL03p008214 Quercus lobata HOM05D005176 ORTHO05D006482 3.1e-124 449.1 335 68.1
Haze_06890 Corylus avellana HOM05D005176 ORTHO05D006482 4.1e-124 448.7 329 70.8
AUR62012769 Chenopodium quinoa HOM05D005176 ORTHO05D006482 5.4e-124 448.4 325 71.1
RcHm_v2.0_Chr5g0001781 Rosa chinensis HOM05D005176 ORTHO05D006482 9.1e-124 447.6 348 67.8
QL05p070074 Quercus lobata HOM05D005176 ORTHO05D006482 1.2e-123 447.2 335 67.8
arahy.Tifrunner.gnm1.ann1.8PRB68 Arachis hypogaea HOM05D005176 ORTHO05D006482 2.0e-123 446.4 273 78.8
EL10Ac8g20147 Beta vulgaris HOM05D005176 ORTHO05D006482 2.0e-123 446.4 340 67.6
Prupe.4G013400 Prunus persica HOM05D005176 ORTHO05D006482 2.0e-123 446.4 340 68.8
CAN.G1186.9 Capsicum annuum HOM05D005176 ORTHO05D006482 2.7e-123 446.0 284 77.1
Sc05g0009510 Simmondsia chinensis HOM05D005176 ORTHO05D006482 2.7e-123 446.0 287 75.3
CiPaw.09G100100 Carya illinoinensis HOM05D005176 ORTHO05D006482 3.5e-123 445.7 330 70.9
Aqoxy1G04164 Aquilegia oxysepala HOM05D005176 ORTHO05D006482 1.0e-122 444.1 342 67.3
arahy.Tifrunner.gnm1.ann1.E5J967 Arachis hypogaea HOM05D005176 ORTHO05D006482 2.2e-122 443.0 328 69.8
Solyc11g011990.2 Solanum lycopersicum HOM05D005176 ORTHO05D006482 6.5e-122 441.4 336 67.9
Potri.011G021800 Populus trichocarpa HOM05D005176 ORTHO05D006482 1.1e-121 440.7 333 68.8
vmacro03656 Vaccinium macrocarpon HOM05D005176 ORTHO05D006482 1.5e-121 440.3 341 69.2
Gohir.D05G176800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 3.2e-121 439.1 332 69.0
SalBow8G4341 Salvia bowleyana HOM05D005176 ORTHO05D006482 3.2e-121 439.1 307 71.7
Sopen11g006800 Solanum pennellii HOM05D005176 ORTHO05D006482 5.5e-121 438.3 336 67.9
Manes.16G002000 Manihot esculenta HOM05D005176 ORTHO05D006482 7.2e-121 438.0 311 70.1
MELO3C021713.2 Cucumis melo HOM05D005176 ORTHO05D006482 9.4e-121 437.6 331 67.7
FvH4_3g01250 Fragaria vesca HOM05D005176 ORTHO05D006482 9.4e-121 437.6 340 68.5
Migut.M01360 Erythranthe guttata HOM05D005176 ORTHO05D006482 1.2e-120 437.2 325 68.3
CANSAT56G2407 Cannabis sativa HOM05D005176 ORTHO05D006482 2.1e-120 436.4 332 67.8
Phvul.006G144800 Phaseolus vulgaris HOM05D005176 ORTHO05D006482 3.6e-120 435.6 287 73.9
Psat1g177440 Pisum sativum HOM05D005176 ORTHO05D006482 4.7e-120 435.3 328 67.7
Glyma.15G112900 Glycine max HOM05D005176 ORTHO05D006482 6.1e-120 434.9 288 73.6
VMungo0540G1825 Vigna mungo HOM05D005176 ORTHO05D006482 1.0e-119 434.1 283 74.9
TPR.G13024 Trifolium pratense HOM05D005176 ORTHO05D006482 1.4e-119 433.7 286 73.4
AL7G31370 Arabidopsis lyrata HOM05D005176 ORTHO05D006482 1.8e-119 433.3 301 70.4
Glyma.09G008500 Glycine max HOM05D005176 ORTHO05D006482 3.0e-119 432.6 288 72.9
Carub.0007s1906 Capsella rubella HOM05D005176 ORTHO05D006482 4.0e-119 432.2 306 69.0
CARHR229150 Cardamine hirsuta HOM05D005176 ORTHO05D006482 4.0e-119 432.2 331 65.6
FAN25G2381 Fragaria x ananassa HOM05D005176 ORTHO05D006482 6.8e-119 431.4 348 67.0
Cc09_g01070 Coffea canephora HOM05D005176 ORTHO05D006482 8.8e-119 431.0 344 65.4
Eucgr.E03960 Eucalyptus grandis HOM05D005176 ORTHO05D006482 8.8e-119 431.0 324 67.9
CsaV3_1G045890 Cucumis sativus L. HOM05D005176 ORTHO05D006482 1.2e-118 430.6 334 67.7
Thhalv10025624m.g Eutrema salsugineum HOM05D005176 ORTHO05D006482 2.0e-118 429.9 282 73.4
Lsat_1_v5_gn_7_14460 Lactuca sativa HOM05D005176 ORTHO05D006482 2.6e-118 429.5 323 68.4
Medtr2g025140 Medicago truncatula HOM05D005176 ORTHO05D006482 2.6e-118 429.5 331 66.2
Sp7g20380 Schrenkiella parvula HOM05D005176 ORTHO05D006482 2.6e-118 429.5 316 67.7
Potri.004G002600 Populus trichocarpa HOM05D005176 ORTHO05D006482 3.4e-118 429.1 292 72.6
Ca_00707_v3 Cicer arietinum L. HOM05D005176 ORTHO05D006482 5.7e-118 428.3 337 67.4
PSO832G1336 Papaver somniferum HOM05D005176 ORTHO05D006482 7.5e-118 427.9 303 71.0
DCAR_004870 Daucus carota HOM05D005176 ORTHO05D006482 9.8e-118 427.6 303 70.6
Lalb_Chr15g0087861 Lupinus albus HOM05D005176 ORTHO05D006482 2.2e-117 426.4 325 67.4
Lj6g0018145 Lotus japonicus HOM05D005176 ORTHO05D006482 3.7e-117 425.6 311 68.5
Hund21443 Selenicereus undatus HOM05D005176 ORTHO05D006482 6.3e-117 424.9 308 69.2
Nn1g03357 Nelumbo nucifera HOM05D005176 ORTHO05D006482 1.8e-116 423.3 276 74.6
PGR042G2916 Punica granatum HOM05D005176 ORTHO05D006482 4.1e-116 422.2 334 65.0
BcaNung03749 Brassica carinata HOM05D005176 ORTHO05D006482 7.0e-116 421.4 328 66.5
THA.LOC104812984 Tarenaya hassleriana HOM05D005176 ORTHO05D006482 1.2e-115 420.6 333 63.7
BcaC09g51146 Brassica carinata HOM05D005176 ORTHO05D006482 2.7e-115 419.5 339 64.3
C01p16510 Brassica napus HOM05D005176 ORTHO05D006482 2.7e-115 419.5 339 64.3
BolC1t01601H Brassica oleracea HOM05D005176 ORTHO05D006482 4.5e-115 418.7 339 64.6
Sabra04G0001100 Salix brachista HOM05D005176 ORTHO05D006482 5.9e-115 418.3 333 66.4
MSTRG.16005 Avicennia marina HOM05D005176 ORTHO05D006482 1.3e-114 417.2 332 63.9
HanXRQChr05g0129171 Helianthus annuus HOM05D005176 ORTHO05D006482 3.8e-114 415.6 275 74.2
BraA01t01306Z Brassica rapa HOM05D005176 ORTHO05D006482 8.6e-114 414.5 295 69.2
AT4G22260 Arabidopsis thaliana HOM05D005176 ORTHO05D006482 1.9e-113 413.3 270 73.3
Aa31LG6G4370 Aethionema arabicum HOM05D005176 ORTHO05D006482 3.3e-113 412.5 366 60.9
A01p13630 Brassica napus HOM05D005176 ORTHO05D006482 7.2e-113 411.4 340 62.6
Sed0020812 Sechium edule HOM05D005176 ORTHO05D006482 1.2e-112 410.6 325 64.6
PSO210G5061 Papaver somniferum HOM05D005176 ORTHO05D006482 8.3e-109 397.9 314 66.2
Ah.09g234400 Amaranthus hybridus HOM05D005176 ORTHO05D006482 1.1e-108 397.5 333 63.4
unitig_748.g7945 Utricularia gibba HOM05D005176 ORTHO05D006482 1.1e-108 397.5 279 71.0
Nitab4.5_0000143g0540 Nicotiana tabacum HOM05D005176 ORTHO05D006482 3.2e-108 396.0 336 63.7
SGA_v2.0_scaffold7G03794 Striga asiatica HOM05D005176 ORTHO05D006482 1.3e-106 390.6 319 64.6
TAR624G0457 Trochodendron aralioides HOM05D005176 ORTHO05D006482 2.3e-106 389.8 214 83.6
ATR1128G104 Amborella trichopoda HOM05D005176 ORTHO05D006482 1.9e-105 386.7 293 65.2
CDE04G3552 Ceratophyllum demersum HOM05D005176 ORTHO05D006482 9.5e-105 384.4 364 57.7
MELO3C021708.2 Cucumis melo HOM05D005176 ORTHO05D006482 9.8e-102 374.4 378 55.8
SMO200G0146 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 2.9e-101 372.9 251 70.9
Os04g0668900 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D006482 8.3e-101 371.3 299 63.5
Nitab4.5_0001198g0240 Nicotiana tabacum HOM05D005176 ORTHO05D006482 3.2e-100 369.4 289 66.1
GSVIVG01006689001 Vitis vinifera HOM05D005176 ORTHO05D006482 1.2e-99 367.5 287 65.5
Pp3c1_30120 Physcomitrium patens HOM05D005176 ORTHO05D006482 1.6e-99 367.1 288 64.2
Peaxi162Scf00063g00213 Petunia axillaris HOM05D005176 ORTHO05D006482 4.6e-99 365.5 336 59.8
Eucgr.E03967 Eucalyptus grandis HOM05D005176 ORTHO05D006482 4.7e-96 355.5 283 64.3
Zm00001eb066910 Zea mays HOM05D005176 ORTHO05D006482 6.2e-96 355.1 281 61.9
MBI16_g26179_MAGBIO Magnolia biondii HOM05D005176 ORTHO05D006482 1.4e-95 354.0 354 54.8
MD05G1354300 Malus domestica HOM05D005176 ORTHO05D006482 1.4e-95 354.0 340 58.5
Pp3c2_11230 Physcomitrium patens HOM05D005176 ORTHO05D006482 1.2e-94 350.9 264 66.7
CBR_g16017 Chara braunii HOM05D005176 ORTHO05D006482 1.3e-93 347.4 227 70.9
Mapoly0050s0020 Marchantia polymorpha HOM05D005176 ORTHO05D006482 2.9e-93 346.3 228 69.7
FAN21G2852 Fragaria x ananassa HOM05D005176 ORTHO05D006482 2.4e-92 343.2 267 66.7
PSO675G3403 Papaver somniferum HOM05D005176 ORTHO05D006482 1.1e-84 317.8 247 64.4
ClCG01G009770 Citrullus lanatus HOM05D005176 ORTHO05D006482 7.1e-84 315.1 322 55.3
Hma1.2p1_2753F.1_g327930 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 1.2e-78 297.7 275 60.0
Duzib160G0919 Durio zibethinus HOM05D005176 ORTHO05D006482 6.4e-77 292.0 334 53.6
Dinv13952 Davidia involucrata HOM05D005176 ORTHO05D006482 1.4e-71 274.2 238 63.9
Zm00001eb066920 Zea mays HOM05D005176 ORTHO05D006482 1.7e-69 267.3 273 53.8
MCO02G133 Micromonas commoda HOM05D005176 ORTHO05D006482 4.9e-69 265.8 214 60.3
PRCOL_00003826 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 4.9e-69 265.8 237 55.7
FAN21G2340 Fragaria x ananassa HOM05D005176 ORTHO05D006482 7.9e-67 258.5 241 62.7
HPP92_004745 Vanilla planifolia HOM05D005176 ORTHO05D006482 1.1e-65 254.6 241 58.9
SMO147G0375 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 2.2e-61 240.4 205 54.6
Pp3c27_6780 Physcomitrium patens HOM05D005176 ORTHO05D006482 2.9e-61 240.0 201 56.7
AagrBONN_evm.TU.Sc2ySwM_362.2521 Anthoceros agrestis HOM05D005176 ORTHO05D006482 1.6e-59 234.2 200 56.0
Cre07.g350750 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 7.9e-59 231.9 195 56.9
Mapoly0003s0157 Marchantia polymorpha HOM05D005176 ORTHO05D006482 7.9e-59 231.9 190 57.9
Cre03.g172500 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 6.2e-56 222.2 196 56.6
MCO02G403 Micromonas commoda HOM05D005176 ORTHO05D006482 3.0e-50 203.4 190 52.6
Duzib235G1273 Durio zibethinus HOM05D005176 ORTHO05D006482 1.2e-46 191.4 120 75.0
AUR62021889 Chenopodium quinoa HOM05D005176 ORTHO05D006482 5.5e-44 182.6 317 40.4
GSVIVG01007272001 Vitis vinifera HOM05D005176 ORTHO05D006482 6.3e-40 169.1 282 41.5
Hma1.2p1_0298F.1_g117340 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 6.9e-39 165.6 114 74.6
PRCOL_00006497 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 7.2e-36 155.6 141 51.8
AagrBONN_evm.TU.Sc2ySwM_344.415 Anthoceros agrestis HOM05D005176 ORTHO05D006482 2.5e-33 147.1 104 60.6
SEGI_26802 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 5.0e-29 132.9 75 80.0
SEGI_01990 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 7.2e-28 129.0 68 83.8
HPP92_004744 Vanilla planifolia HOM05D005176 ORTHO05D006482 1.5e-25 121.3 75 74.7
QL03p008204 Quercus lobata HOM05D005176 ORTHO05D006482 5.0e-21 106.3 89 59.6
arahy.Tifrunner.gnm1.ann1.E0HWS1 Arachis hypogaea HOM05D005176 ORTHO05D038931 4.7e-19 99.8 94 60.6
A03p53390 Brassica napus HOM05D005176 ORTHO05D006482 8.8e-18 95.5 70 67.1
CBR_g12323 Chara braunii HOM05D005176 ORTHO05D006482 1.1e-15 88.6 65 58.5
BraA03t14406Z Brassica rapa HOM05D005176 ORTHO05D006482 1.0e-13 82.0 56 73.2
Os03g0847500 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D038931 5.0e-13 79.7 107 48.6
Lj3g0010948 Lotus japonicus HOM05D005176 ORTHO05D006482 8.5e-13 79.0 37 89.2
CBR_g12320 Chara braunii HOM05D000019 ORTHO05D009492 4.2e-12 76.6 81 46.9
Prupe.1G061900 Prunus persica HOM05D001659 ORTHO05D001659 1.4e-07 61.6 191 27.2
Nn3g19263 Nelumbo nucifera HOM05D001659 ORTHO05D001659 1.6e-06 58.2 181 26.5
CBR_g12318 Chara braunii HOM05D000019 ORTHO05D008477 2.7e-06 57.4 40 57.5
PRCOL_00006496 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 3.5e-06 57.0 53 56.6


User provided reference genes

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