Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr10.2236 Acer truncatum HOM05D007037 ORTHO05D006691 1.7e-35 152.1 78 100.0
Manes.16G006400 Manihot esculenta HOM05D007037 ORTHO05D006691 4.1e-21 104.4 76 71.1
Manes.01G159201 Manihot esculenta HOM05D007037 ORTHO05D006691 2.0e-20 102.1 76 69.7
QL05p073032 Quercus lobata HOM05D007037 ORTHO05D006691 2.7e-20 101.7 76 68.4
Potri.004G013601 Populus trichocarpa HOM05D007037 ORTHO05D006691 3.5e-20 101.3 76 68.4
Potri.011G004400 Populus trichocarpa HOM05D007037 ORTHO05D006691 7.7e-20 100.1 76 65.8
Thecc.06G221700 Theobroma cacao HOM05D007037 ORTHO05D006691 1.7e-19 99.0 76 67.1
CiPaw.09G092600 Carya illinoinensis HOM05D007037 ORTHO05D006691 1.1e-18 96.3 76 68.4
MD05G1347800 Malus domestica HOM05D007037 ORTHO05D006691 1.5e-18 95.9 77 62.3
RcHm_v2.0_Chr5g0002881 Rosa chinensis HOM05D007037 ORTHO05D006691 1.9e-18 95.5 77 62.3
Duzib192G0147 Durio zibethinus HOM05D007037 ORTHO05D006691 2.5e-18 95.1 76 65.8
MD10G1322200 Malus domestica HOM05D007037 ORTHO05D006691 3.3e-18 94.7 77 61.0
Gohir.A05G170900 Gossypium hirsutum HOM05D007037 ORTHO05D006691 5.5e-18 94.0 76 64.5
Prupe.4G019700 Prunus persica HOM05D007037 ORTHO05D006691 5.5e-18 94.0 78 64.1
FAN25G2740 Fragaria x ananassa HOM05D007037 ORTHO05D006691 1.2e-17 92.8 77 61.0
FAN21G2981 Fragaria x ananassa HOM05D001191 ORTHO05D000979 2.8e-17 91.7 77 61.0
CSS0006945 Camellia sinensis var. sinensis HOM05D007037 ORTHO05D006691 1.0e-16 89.7 79 63.3
Oeu025269.1 Olea europaea HOM05D007037 ORTHO05D006691 1.0e-16 89.7 77 63.6
TAR624G1029 Trochodendron aralioides HOM05D007037 ORTHO05D006691 2.3e-16 88.6 81 61.7
COL.COLO4_00342 Corchorus olitorius HOM05D007037 ORTHO05D006691 4.0e-16 87.8 76 59.2
Gorai.009G179200 Gossypium raimondii HOM05D007037 ORTHO05D006691 5.2e-16 87.4 76 60.5
Eucgr.E04050 Eucalyptus grandis HOM05D007037 ORTHO05D006691 8.9e-16 86.7 77 59.7
Dinv13899 Davidia involucrata HOM05D001191 ORTHO05D000979 2.6e-15 85.1 79 60.8
Gohir.D05G173900 Gossypium hirsutum HOM05D007037 ORTHO05D006691 2.6e-15 85.1 76 59.2
Lsat_1_v5_gn_4_60821 Lactuca sativa HOM05D007037 ORTHO05D006691 2.6e-15 85.1 76 57.9
ECA234G0681 Erigeron canadensis HOM05D007037 ORTHO05D006691 7.5e-15 83.6 76 57.9
Hma1.2p1_0749F.1_g212630 Hydrangea macrophylla HOM05D007037 ORTHO05D006691 7.5e-15 83.6 80 62.5
Hma1.2p1_0749F.1_g212635 Hydrangea macrophylla HOM05D007037 ORTHO05D006691 7.5e-15 83.6 80 62.5
Nitab4.5_0000005g0340 Nicotiana tabacum HOM05D007037 ORTHO05D006691 9.8e-15 83.2 76 55.3
CSS0026389 Camellia sinensis var. sinensis HOM05D007037 ORTHO05D006691 1.7e-14 82.4 80 56.2
Nitab4.5_0009030g0010 Nicotiana tabacum HOM05D007037 ORTHO05D006691 2.2e-14 82.0 76 53.9
Cc09_g01610 Coffea canephora HOM05D007037 ORTHO05D006691 2.9e-14 81.6 78 59.0
Sed0008683 Sechium edule HOM05D007037 ORTHO05D006691 4.9e-14 80.9 76 59.2
ClCG01G021940 Citrullus lanatus HOM05D007037 ORTHO05D006691 1.8e-13 79.0 76 61.8
CsaV3_6G049020 Cucumis sativus L. HOM05D007037 ORTHO05D006691 2.4e-13 78.6 76 60.5
DCAR_008156 Daucus carota HOM05D007037 ORTHO05D006691 4.1e-13 77.8 79 54.4
FvH4_3g01970 Fragaria vesca HOM05D007037 ORTHO05D006691 7.0e-13 77.0 77 54.5
Sabra11G0003500 Salix brachista HOM05D007037 ORTHO05D006691 7.0e-13 77.0 71 54.9
TPR.G13436 Trifolium pratense HOM05D007037 ORTHO05D006691 9.2e-13 76.6 78 56.4
Medtr2g023440 Medicago truncatula HOM05D007037 ORTHO05D006691 2.0e-12 75.5 78 55.1
Peaxi162Scf00331g00119 Petunia axillaris HOM05D007037 ORTHO05D006691 2.0e-12 75.5 77 54.5
Aqoxy1G02111 Aquilegia oxysepala HOM05D007037 ORTHO05D006691 1.3e-11 72.8 73 54.8
Ca_26471_v3 Cicer arietinum L. HOM05D007037 ORTHO05D006691 1.3e-11 72.8 84 51.2
Sed0010286 Sechium edule HOM05D007037 ORTHO05D006691 1.7e-11 72.4 76 57.9
Sopen02g011150 Solanum pennellii HOM05D007037 ORTHO05D006691 3.9e-11 71.2 76 50.0
PGSC0003DMG400016450 Solanum tuberosum HOM05D007037 ORTHO05D006691 5.0e-11 70.9 79 48.1
Nitab4.5_0005074g0010 Nicotiana tabacum HOM05D007037 ORTHO05D006691 8.6e-11 70.1 78 52.6
Nitab4.5_0002827g0030 Nicotiana tabacum HOM05D007037 ORTHO05D006691 1.1e-10 69.7 78 52.6
Psat4g006560 Pisum sativum HOM05D007037 ORTHO05D006691 1.1e-10 69.7 76 50.0
Ciclev10018055m.g Citrus clementina HOM05D007037 ORTHO05D006691 1.9e-10 68.9 76 53.9
Sabra04G0006400 Salix brachista HOM05D007037 ORTHO05D006691 3.3e-10 68.2 76 50.0
Sopen02g025300 Solanum pennellii HOM05D007037 ORTHO05D006691 3.3e-10 68.2 79 48.1
Ca_21080_v3 Cicer arietinum L. HOM05D007037 ORTHO05D006691 4.3e-10 67.8 77 53.2
Glyma.17G012900 Glycine max HOM05D007037 ORTHO05D006691 9.5e-10 66.6 76 50.0
TPR.G37004 Trifolium pratense HOM05D007037 ORTHO05D006691 1.6e-09 65.9 77 50.6
vmacro23211 Vaccinium macrocarpon HOM05D007037 ORTHO05D006691 3.6e-09 64.7 77 51.9
Phvul.003G079400 Phaseolus vulgaris HOM05D007037 ORTHO05D006691 4.7e-09 64.3 76 50.0
SalBow8G3366 Salvia bowleyana HOM05D007037 ORTHO05D006691 4.7e-09 64.3 68 54.4
Thhalv10009555m.g Eutrema salsugineum HOM05D001191 ORTHO05D000979 6.2e-09 63.9 78 47.4
PGSC0003DMG400019869 Solanum tuberosum HOM05D007037 ORTHO05D006691 6.2e-09 63.9 75 52.0
arahy.Tifrunner.gnm1.ann1.98H95S Arachis hypogaea HOM05D007037 ORTHO05D006691 1.8e-08 62.4 79 49.4
A06p08290 Brassica napus HOM05D007037 ORTHO05D006691 2.3e-08 62.0 78 46.2
Glyma.07G261100 Glycine max HOM05D007037 ORTHO05D006691 2.3e-08 62.0 76 47.4
Lj4g0019440 Lotus japonicus HOM05D007037 ORTHO05D006691 4.0e-08 61.2 76 48.7
Gorai.013G189700 Gossypium raimondii HOM05D007037 ORTHO05D006691 5.2e-08 60.8 77 45.5
arahy.Tifrunner.gnm1.ann1.CZMF37 Arachis hypogaea HOM05D007037 ORTHO05D006691 6.8e-08 60.5 76 47.4
EL10Ac8g20067 Beta vulgaris HOM05D007037 ORTHO05D006691 6.8e-08 60.5 76 50.0
Gohir.D11G101450 Gossypium hirsutum HOM05D007037 ORTHO05D006691 6.8e-08 60.5 76 46.1
Gohir.D13G171150 Gossypium hirsutum HOM05D007037 ORTHO05D006691 6.8e-08 60.5 77 48.1
Gorai.007G108200 Gossypium raimondii HOM05D007037 ORTHO05D006691 6.8e-08 60.5 76 46.1
Sp1g10350 Schrenkiella parvula HOM05D001191 ORTHO05D000979 6.8e-08 60.5 78 44.9
AL1G22910 Arabidopsis lyrata HOM05D001191 ORTHO05D000979 8.9e-08 60.1 77 45.5
Cfa000214 Carpinus fangiana HOM05D007037 ORTHO05D006691 8.9e-08 60.1 76 46.1
vmacro15807 Vaccinium macrocarpon HOM05D007037 ORTHO05D006691 8.9e-08 60.1 88 42.0
HanXRQChr16g0506491 Helianthus annuus HOM05D007037 ORTHO05D006691 1.2e-07 59.7 83 42.2
CARHR012050 Cardamine hirsuta HOM05D007037 ORTHO05D006691 1.5e-07 59.3 77 44.2
Aa31LG1G3030 Aethionema arabicum HOM05D007037 ORTHO05D006691 2.0e-07 58.9 78 44.9
C05p09860 Brassica napus HOM05D007037 ORTHO05D006691 2.0e-07 58.9 78 44.9
Carub.0001s1138 Capsella rubella HOM05D007037 ORTHO05D006691 2.0e-07 58.9 77 44.2
Gohir.D13G171533 Gossypium hirsutum HOM05D007037 ORTHO05D006691 2.0e-07 58.9 77 44.2
AT1G11740 Arabidopsis thaliana HOM05D001191 ORTHO05D000979 2.6e-07 58.5 77 44.2
Cc05_g04380 Coffea canephora HOM05D007037 ORTHO05D006691 2.6e-07 58.5 81 45.7
Haze_06807 Corylus avellana HOM05D007037 ORTHO05D006691 2.6e-07 58.5 76 44.7
BcaC05g25043 Brassica carinata HOM05D001191 ORTHO05D000979 3.4e-07 58.2 78 44.9
CiPaw.10G071700 Carya illinoinensis HOM05D007037 ORTHO05D006691 4.4e-07 57.8 76 40.8
Zm00001eb048920 Zea mays HOM05D007037 ORTHO05D006691 4.4e-07 57.8 75 46.7
Actinidia09718 Actinidia chinensis HOM05D007037 ORTHO05D006691 7.5e-07 57.0 89 40.4
Migut.M01325 Erythranthe guttata HOM05D007037 ORTHO05D006691 7.5e-07 57.0 76 43.4
Glyma.09G004000 Glycine max HOM05D007037 ORTHO05D006691 7.5e-07 57.0 75 44.0
Gohir.A11G096766 Gossypium hirsutum HOM05D007037 ORTHO05D006691 1.3e-06 56.2 76 43.4
Lj6g0006723 Lotus japonicus HOM05D007037 ORTHO05D006691 1.3e-06 56.2 77 45.5
THA.LOC104823525 Tarenaya hassleriana HOM05D007037 ORTHO05D006691 1.3e-06 56.2 78 44.9
Medtr4g132230 Medicago truncatula HOM05D007037 ORTHO05D006691 1.7e-06 55.8 76 44.7
Hund23465 Selenicereus undatus HOM05D007037 ORTHO05D006691 3.7e-06 54.7 77 48.1
Lalb_Chr13g0304241 Lupinus albus HOM05D007037 ORTHO05D006691 6.4e-06 53.9 76 44.7
Os03g0574600 Oryza sativa ssp. japonica HOM05D007037 ORTHO05D006691 6.4e-06 53.9 80 45.0


User provided reference genes

Program Settings