Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr10.2227 Acer truncatum HOM05D002890 ORTHO05D005855 0.0e+00 1151.3 625 100.0
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 5.7e-214 748.0 657 68.2
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 5.4e-180 635.2 693 57.7
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 4.2e-177 625.5 685 57.2
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 3.6e-176 622.5 685 57.2
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 6.1e-176 621.7 688 58.9
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 3.0e-175 619.4 685 57.1
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 3.0e-175 619.4 686 57.9
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 1.6e-171 607.1 683 57.4
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 1.9e-169 600.1 692 55.5
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 1.4e-167 594.0 694 56.3
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 1.7e-165 587.0 695 57.4
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 3.7e-165 585.9 693 55.6
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 4.9e-165 585.5 695 57.3
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 5.0e-162 575.5 731 53.6
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 5.6e-161 572.0 668 57.2
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 9.8e-158 561.2 606 57.1
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 1.4e-156 557.4 698 54.3
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 4.1e-156 555.8 696 51.6
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 2.5e-153 546.6 630 55.2
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 9.5e-153 544.7 650 52.3
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 1.8e-151 540.4 598 56.4
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 6.6e-146 521.9 631 51.2
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 1.1e-145 521.2 641 53.7
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 1.5e-145 520.8 643 51.3
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 6.2e-144 515.4 592 54.7
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 1.1e-143 514.6 605 53.4
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 5.2e-143 512.3 662 51.7
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 1.5e-142 510.8 667 51.7
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 2.6e-142 510.0 700 49.4
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 5.8e-142 508.8 592 54.6
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 4.2e-140 502.7 628 53.5
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 7.8e-139 498.4 548 54.9
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 1.7e-138 497.3 652 50.6
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 3.0e-138 496.5 646 51.2
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 3.3e-137 493.0 652 51.1
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 2.1e-136 490.3 655 50.4
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 8.1e-136 488.4 620 53.7
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 3.1e-135 486.5 658 49.5
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 1.2e-134 484.6 572 53.0
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 2.9e-133 479.9 658 49.8
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 9.3e-132 474.9 586 54.3
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 2.7e-131 473.4 599 51.4
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 3.5e-131 473.0 586 53.9
Nn4g25681 Nelumbo nucifera HOM05D002890 ORTHO05D005855 6.0e-131 472.2 680 50.7
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 1.5e-129 467.6 547 52.8
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 1.9e-129 467.2 595 49.4
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 3.3e-129 466.5 492 59.3
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 8.1e-128 461.8 579 54.1
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 8.1e-128 461.8 687 46.3
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 6.9e-127 458.8 666 46.2
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 1.2e-126 458.0 616 51.0
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 7.6e-126 455.3 658 48.9
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 4.9e-125 452.6 619 48.5
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 7.1e-124 448.7 685 46.7
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 2.1e-123 447.2 640 45.0
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 6.0e-123 445.7 642 46.7
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 7.9e-123 445.3 672 47.8
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 7.9e-123 445.3 631 49.6
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 1.3e-122 444.5 645 49.6
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 1.8e-122 444.1 633 46.9
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 5.1e-122 442.6 579 48.0
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 8.7e-122 441.8 620 49.7
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 1.9e-121 440.7 577 49.2
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 3.1e-119 433.3 601 50.4
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 5.3e-119 432.6 616 48.4
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 6.4e-117 425.6 581 48.2
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 1.2e-115 421.4 603 47.8
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 2.5e-113 413.7 621 47.3
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 4.3e-113 412.9 579 50.3
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 8.2e-112 408.7 659 45.1
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 5.3e-111 406.0 699 45.4
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 9.0e-111 405.2 665 44.4
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 3.4e-110 403.3 578 48.1
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 8.4e-109 398.7 487 54.8
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 2.3e-106 390.6 639 42.9
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 6.7e-106 389.0 641 43.8
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 5.7e-105 386.0 617 44.7
Oeu039345.1 Olea europaea HOM05D002890 ORTHO05D005855 7.4e-105 385.6 437 51.7
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 3.7e-104 383.3 551 47.7
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 1.8e-103 380.9 585 46.3
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 9.0e-103 378.6 587 46.7
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 4.2e-100 369.8 629 43.2
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 5.5e-100 369.4 612 45.4
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.2e-99 368.2 607 45.6
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 3.6e-99 366.7 573 45.0
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 1.8e-98 364.4 319 58.9
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 3.0e-98 363.6 574 44.1
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 3.9e-98 363.2 582 45.4
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 1.5e-97 361.3 573 45.7
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 7.4e-97 359.0 576 45.8
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 2.8e-96 357.1 658 39.5
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 3.1e-95 353.6 574 44.4
HPP92_025078 Vanilla planifolia HOM05D002890 ORTHO05D005855 5.0e-93 346.3 598 44.6
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 8.5e-93 345.5 584 43.0
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 1.1e-92 345.1 477 48.8
Lj1P1230T41 Lonicera japonica HOM05D002890 ORTHO05D005855 2.1e-91 340.9 414 52.9
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 5.1e-90 336.3 457 48.4
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 8.2e-88 328.9 579 43.2
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 2.4e-87 327.4 574 43.2
RcHm_v2.0_Chr5g0003091 Rosa chinensis HOM05D002890 ORTHO05D005855 9.1e-87 325.5 305 59.0
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.5e-86 324.7 490 46.3
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 2.0e-86 324.3 574 42.7
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 2.6e-86 323.9 577 42.6
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 1.7e-85 321.2 572 42.5
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 1.7e-85 321.2 572 42.5
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 4.8e-80 303.1 638 38.1
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 2.4e-79 300.8 537 40.4
QL05p073153 Quercus lobata HOM05D002890 ORTHO05D005855 2.8e-72 277.3 557 37.9
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 1.8e-71 274.6 645 34.4
RcHm_v2.0_Chr5g0003031 Rosa chinensis HOM05D002890 ORTHO05D005855 7.0e-71 272.7 270 56.7
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.0e-62 244.6 472 42.4
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 2.2e-56 224.6 379 42.7
Cpa.g.c46709 Carica papaya HOM05D002890 ORTHO05D005855 2.2e-56 224.6 231 55.8
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.1e-51 208.0 173 61.3
CiPaw.10G071000 Carya illinoinensis HOM05D002890 ORTHO05D005855 1.0e-50 205.7 322 53.1
BcaC01g05870 Brassica carinata HOM05D002890 ORTHO05D005855 1.4e-50 205.3 466 35.6
BolC3t14541H Brassica oleracea HOM05D002890 ORTHO05D005855 2.0e-49 201.4 463 34.8
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 5.8e-49 199.9 463 34.8
Duzib160G0022 Durio zibethinus HOM05D002890 ORTHO05D005855 2.9e-48 197.6 281 52.0
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 5.6e-44 183.3 603 33.5
Nitab4.5_0002954g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 9.6e-20 102.8 131 49.6
CBR_g32188 Chara braunii HOM05D002890 ORTHO05D005855 1.6e-19 102.1 770 23.4
Nitab4.5_0002954g0060 Nicotiana tabacum HOM05D002890 ORTHO05D005855 4.2e-15 87.4 107 66.4
SEGI_20102 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 4.6e-14 84.0 63 60.3
MCO05G671 Micromonas commoda HOM05D002890 ORTHO05D005855 1.5e-12 79.0 536 22.9
SEGI_38924 Sequoiadendron giganteum HOM05D009358 ORTHO05D011087 6.9e-10 70.1 53 62.3


User provided reference genes

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