Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr10.2199 Acer truncatum HOM05D005165 ORTHO05D006361 0.0e+00 2551.5 1367 100.0
Ciclev10014034m.g Citrus clementina HOM05D005165 ORTHO05D006361 0.0e+00 1357.0 1484 52.8
Cfa000241 Carpinus fangiana HOM05D005165 ORTHO05D006361 0.0e+00 1198.7 1520 48.4
Potri.004G017500 Populus trichocarpa HOM05D005165 ORTHO05D006361 0.0e+00 1192.6 1537 48.2
Duzib235G1549 Durio zibethinus HOM05D005165 ORTHO05D006361 0.0e+00 1188.3 1487 50.4
Sabra04G0009600 Salix brachista HOM05D005165 ORTHO05D006361 0.0e+00 1186.8 1554 49.2
QL05p073800 Quercus lobata HOM05D005165 ORTHO05D006361 0.0e+00 1185.6 1510 50.5
Dinv13878 Davidia involucrata HOM05D005165 ORTHO05D006361 0.0e+00 1185.2 1569 47.1
TWI63G0677 Tripterygium wilfordii HOM05D005165 ORTHO05D006361 0.0e+00 1161.4 1596 47.1
Thecc.06G218200 Theobroma cacao HOM05D005165 ORTHO05D006361 0.0e+00 1134.4 1486 48.9
Glyma.17G014900 Glycine max HOM05D005165 ORTHO05D006361 0.0e+00 1123.2 1606 44.7
RcHm_v2.0_Chr5g0003561 Rosa chinensis HOM05D005165 ORTHO05D006361 0.0e+00 1120.5 1529 48.5
Haze_06780 Corylus avellana HOM05D005165 ORTHO05D006361 0.0e+00 1119.4 1542 46.1
Manes.17G037700 Manihot esculenta HOM05D005165 ORTHO05D006361 0.0e+00 1117.8 1483 46.8
Gohir.D10G013600 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1117.4 1791 43.7
Phvul.003G077600 Phaseolus vulgaris HOM05D005165 ORTHO05D006361 0.0e+00 1116.7 1604 44.3
Prupe.4G023200 Prunus persica HOM05D005165 ORTHO05D006361 0.0e+00 1115.9 1500 47.0
vmacro03694 Vaccinium macrocarpon HOM05D005165 ORTHO05D006361 0.0e+00 1096.3 1496 46.6
CANSAT56G1527 Cannabis sativa HOM05D005165 ORTHO05D006361 0.0e+00 1092.8 1506 48.1
Nn1g03565 Nelumbo nucifera HOM05D005165 ORTHO05D006361 0.0e+00 1085.1 1485 45.1
arahy.Tifrunner.gnm1.ann1.FU33AK Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1083.6 1564 45.7
Medtr4g131940 Medicago truncatula HOM05D005165 ORTHO05D006361 0.0e+00 1082.0 1545 46.6
CSS0001066 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1079.7 1559 47.0
arahy.Tifrunner.gnm1.ann1.K6JFDD Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1078.5 1564 45.9
Lalb_Chr01g0014921 Lupinus albus HOM05D005165 ORTHO05D006361 3.5e-309 1065.4 1524 44.8
Glyma.07G259400 Glycine max HOM05D005165 ORTHO05D006361 1.6e-306 1056.6 1596 44.4
CSS0020297 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.5e-304 1050.0 1436 47.5
TPR.G37081 Trifolium pratense HOM05D005165 ORTHO05D006361 2.0e-304 1049.7 1652 43.2
arahy.Tifrunner.gnm1.ann1.QZ1TNI Arachis hypogaea HOM05D005165 ORTHO05D006361 2.9e-303 1045.8 1557 43.9
COL.COLO4_31753 Corchorus olitorius HOM05D005165 ORTHO05D006361 2.9e-303 1045.8 1464 47.6
Gorai.010G179700 Gossypium raimondii HOM05D005165 ORTHO05D006361 3.5e-301 1038.9 1487 44.7
Psat4g007280 Pisum sativum HOM05D005165 ORTHO05D006361 3.9e-300 1035.4 1533 44.3
Lj2C270G14 Lonicera japonica HOM05D005165 ORTHO05D006361 4.8e-298 1028.5 1475 43.9
Lj4g0017916 Lotus japonicus HOM05D005165 ORTHO05D006361 6.9e-297 1024.6 1506 44.0
Gohir.D06G153700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 2.6e-296 1022.7 1487 44.7
TAR627G0931 Trochodendron aralioides HOM05D005165 ORTHO05D006361 5.8e-296 1021.5 1489 44.3
Sed0027912 Sechium edule HOM05D005165 ORTHO05D006361 6.4e-295 1018.1 1475 43.7
ClCG03G004830 Citrullus lanatus HOM05D005165 ORTHO05D006361 1.4e-294 1016.9 1498 46.0
CsaV3_1G010870 Cucumis sativus L. HOM05D005165 ORTHO05D006361 1.6e-293 1013.4 1493 46.2
Migut.M01303 Erythranthe guttata HOM05D005165 ORTHO05D006361 6.0e-293 1011.5 1494 43.9
MD10G1319300 Malus domestica HOM05D005165 ORTHO05D006361 4.3e-291 1005.4 1555 44.0
Ca_30199_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 1.4e-286 990.3 1500 42.6
Ca_21091_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 3.2e-286 989.2 1499 42.8
Rhsim13G0155600 Rhododendron simsii HOM05D005165 ORTHO05D006361 1.3e-282 977.2 1486 44.7
Nitab4.5_0003254g0110 Nicotiana tabacum HOM05D005165 ORTHO05D006361 1.4e-281 973.8 1531 44.5
FvH4_3g02340 Fragaria vesca HOM05D005165 ORTHO05D006361 4.5e-280 968.8 1525 45.3
Cc09_g01850 Coffea canephora HOM05D005165 ORTHO05D006361 1.0e-279 967.6 1505 44.7
Nitab4.5_0007482g0050 Nicotiana tabacum HOM05D005165 ORTHO05D006361 1.7e-279 966.8 1486 42.7
Hund23483 Selenicereus undatus HOM05D005165 ORTHO05D006361 6.0e-277 958.4 1478 42.5
Aqoxy1G03259 Aquilegia oxysepala HOM05D005165 ORTHO05D006361 6.5e-271 938.3 1503 44.1
THA.LOC104813036 Tarenaya hassleriana HOM05D005165 ORTHO05D006361 1.2e-269 934.1 1499 43.7
MBI02_g22104_MAGBIO Magnolia biondii HOM05D005165 ORTHO05D006361 2.4e-265 919.8 1512 41.8
SGA_v2.0_scaffold4G01924 Striga asiatica HOM05D005165 ORTHO05D006361 9.1e-265 917.9 1475 42.4
PGR004G2872 Punica granatum HOM05D005165 ORTHO05D006361 5.9e-264 915.2 1476 41.7
BcaNung02250 Brassica carinata HOM05D005165 ORTHO05D006361 5.5e-262 908.7 1511 41.7
Oeu063907.1 Olea europaea HOM05D005165 ORTHO05D006361 9.4e-262 907.9 1533 42.9
PSO675G7058 Papaver somniferum HOM05D005165 ORTHO05D006361 1.2e-261 907.5 1507 41.5
BcaC09g51197 Brassica carinata HOM05D005165 ORTHO05D006361 2.6e-259 899.8 1508 39.9
MELO3C002466.2 Cucumis melo HOM05D005165 ORTHO05D006361 7.4e-259 898.3 1530 42.3
Sopen02g025090 Solanum pennellii HOM05D005165 ORTHO05D006361 1.3e-258 897.5 1555 40.1
Carub.0007s1958 Capsella rubella HOM05D005165 ORTHO05D006361 5.3e-257 892.1 1499 40.0
PSO541G6479 Papaver somniferum HOM05D005165 ORTHO05D006361 1.2e-256 891.0 1507 40.9
AT4G21820 Arabidopsis thaliana HOM05D005165 ORTHO05D006361 2.6e-256 889.8 1500 40.1
C01p15840 Brassica napus HOM05D005165 ORTHO05D006361 2.2e-255 886.7 1535 39.3
DCAR_004209 Daucus carota HOM05D005165 ORTHO05D006361 8.5e-255 884.8 1513 39.1
Sp7g19990 Schrenkiella parvula HOM05D005165 ORTHO05D006361 2.5e-254 883.2 1501 39.9
BolC1t01538H Brassica oleracea HOM05D005165 ORTHO05D006361 3.9e-252 875.9 1524 39.2
Sc17g0007260 Simmondsia chinensis HOM05D005165 ORTHO05D006361 1.1e-251 874.4 1482 43.0
HanXRQChr05g0129591 Helianthus annuus HOM05D005165 ORTHO05D006361 5.7e-251 872.1 1557 41.4
A01p13150 Brassica napus HOM05D005165 ORTHO05D006361 3.1e-249 866.3 1495 39.0
BraA01t01259Z Brassica rapa HOM05D005165 ORTHO05D006361 3.3e-243 846.3 1512 38.6
Peaxi162Scf00262g00611 Petunia axillaris HOM05D005165 ORTHO05D006361 9.1e-241 838.2 1520 41.1
CARHR228530 Cardamine hirsuta HOM05D005165 ORTHO05D006361 6.3e-234 815.5 1493 37.2
FAN21G3214 Fragaria x ananassa HOM05D005165 ORTHO05D006361 7.2e-230 802.0 1522 41.5
Gohir.A06G147800 Gossypium hirsutum HOM05D005165 ORTHO05D006361 9.5e-230 801.6 979 49.5
FAN25G1001 Fragaria x ananassa HOM05D005165 ORTHO05D006361 1.3e-226 791.2 1591 40.4
ECA236G1313 Erigeron canadensis HOM05D005165 ORTHO05D006361 1.8e-225 787.3 1476 39.7
Thhalv10024235m.g Eutrema salsugineum HOM05D005165 ORTHO05D006361 2.4e-225 786.9 1498 37.4
Gohir.A10G013700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 1.0e-220 771.5 1177 47.1
GSVIVG01002377001 Vitis vinifera HOM05D005165 ORTHO05D006361 3.7e-218 763.1 880 50.8
AUR62021974 Chenopodium quinoa HOM05D005165 ORTHO05D006361 3.2e-217 760.0 1474 38.4
CSS0012929 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 7.8e-216 755.4 1341 41.8
AUR62012682 Chenopodium quinoa HOM05D005165 ORTHO05D006361 1.3e-215 754.6 1474 38.1
Ah.09g235020 Amaranthus hybridus HOM05D005165 ORTHO05D006361 4.7e-213 746.1 1406 38.2
Actinidia05522 Actinidia chinensis HOM05D005165 ORTHO05D006361 6.8e-212 742.3 1223 41.7
MSTRG.15978 Avicennia marina HOM05D005165 ORTHO05D006361 8.9e-212 741.9 984 44.3
Aa31LG6G3830 Aethionema arabicum HOM05D005165 ORTHO05D006361 1.1e-204 718.4 1551 37.1
Solyc02g080390.2 Solanum lycopersicum HOM05D005165 ORTHO05D006361 1.4e-204 718.0 1403 37.4
unitig_748.g7100 Utricularia gibba HOM05D005165 ORTHO05D006361 3.4e-203 713.4 1483 36.1
AL7G32110 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 5.8e-203 712.6 1187 39.0
CiPaw.09G089900 Carya illinoinensis HOM05D005165 ORTHO05D006361 8.3e-202 708.8 780 52.7
VMungo1215G1456 Vigna mungo HOM05D005165 ORTHO05D000002 5.8e-195 686.0 2398 28.0
Cpa.g.sc198.37 Carica papaya HOM05D005165 ORTHO05D006361 4.3e-190 669.8 938 45.4
EL10Ac8g20027 Beta vulgaris HOM05D005165 ORTHO05D006361 2.4e-188 664.1 1537 34.9
CDE05G2160 Ceratophyllum demersum HOM05D005165 ORTHO05D006361 4.0e-172 610.1 1451 32.3
Eucgr.D01308 Eucalyptus grandis HOM05D005165 ORTHO05D006361 1.2e-171 608.6 1198 36.3
HPP92_012397 Vanilla planifolia HOM05D005165 ORTHO05D006361 8.4e-162 575.9 1281 34.4
Lsat_1_v5_gn_7_17620 Lactuca sativa HOM05D005165 ORTHO05D006361 2.5e-153 547.7 796 43.5
Zm00001eb322760 Zea mays HOM05D005165 ORTHO05D006361 7.7e-139 499.6 1511 29.8
Cpa.g.sc198.36 Carica papaya HOM05D005165 ORTHO05D006361 3.8e-122 444.1 544 46.7
Gorai.011G015400 Gossypium raimondii HOM05D005165 ORTHO05D006361 8.0e-120 436.4 1343 30.4
ATR0752G018 Amborella trichopoda HOM05D005165 ORTHO05D006361 3.6e-112 411.0 716 37.8
CSS0017164 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 4.5e-107 394.0 476 50.4
HPP92_012319 Vanilla planifolia HOM05D005165 ORTHO05D006361 1.7e-106 392.1 868 33.8
CiPaw.09G090000 Carya illinoinensis HOM05D005165 ORTHO05D006361 3.8e-106 391.0 552 51.4
FAN21G2432 Fragaria x ananassa HOM05D005165 ORTHO05D006361 9.5e-105 386.3 588 45.7
GSVIVG01004517001 Vitis vinifera HOM05D005165 ORTHO05D006361 9.8e-94 349.7 661 44.5
MSTRG.15979 Avicennia marina HOM05D005165 ORTHO05D006361 3.1e-87 328.2 318 61.3
AagrBONN_evm.TU.Sc2ySwM_117.1637__1638 Anthoceros agrestis HOM05D005165 ORTHO05D006361 6.2e-80 303.9 1488 23.7
Lsat_1_v5_gn_7_17640 Lactuca sativa HOM05D005165 ORTHO05D006361 1.5e-70 272.7 346 46.2
QL05p073557 Quercus lobata HOM05D005165 ORTHO05D006361 3.0e-66 258.5 438 38.6
PGSC0003DMG400016486 Solanum tuberosum HOM05D005165 ORTHO05D006361 3.0e-66 258.5 224 62.1
CSS0021361 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 4.3e-65 254.6 317 49.8
Pp3c24_1350 Physcomitrium patens HOM05D005165 ORTHO05D006361 2.8e-64 251.9 1456 24.9
SEGI_30095 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 2.4e-60 238.8 893 26.8
SMO200G0122 Selaginella moellendorffii HOM05D005165 ORTHO05D006361 1.6e-59 236.1 1483 23.5
Mapoly0043s0047 Marchantia polymorpha HOM05D005165 ORTHO05D006361 8.7e-58 230.3 521 31.3
SEGI_17063 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.7e-53 216.1 1133 26.4
SEGI_37992 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 7.1e-52 210.7 456 29.8
GSVIVG01002955001 Vitis vinifera HOM05D005165 ORTHO05D006361 3.5e-51 208.4 151 74.2
SEGI_19133 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 3.1e-47 195.3 542 28.4
ATR0752G007 Amborella trichopoda HOM05D005165 ORTHO05D006361 2.5e-44 185.7 201 58.7
Solyc02g080400.3 Solanum lycopersicum HOM05D005165 ORTHO05D006361 7.9e-43 180.6 152 63.8
CAN.G569.18 Capsicum annuum HOM05D005165 ORTHO05D006361 9.7e-41 173.7 127 70.1
SEGI_29404 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.6e-40 172.9 652 26.2
SGA_v2.0_scaffold186G40236 Striga asiatica HOM05D005165 ORTHO05D006361 3.8e-37 161.8 153 58.2
SEGI_21682 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 9.4e-36 157.1 289 31.5
HPP92_012318 Vanilla planifolia HOM05D005165 ORTHO05D006361 5.1e-34 151.4 207 44.0
AL7G32100 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 3.5e-22 112.1 101 57.4
CBR_g12408 Chara braunii HOM05D000019 ORTHO05D000048 4.2e-20 105.1 312 27.9
SHI14112 Sapria himalayana HOM05D005165 ORTHO05D006361 4.2e-20 105.1 100 53.0
HanXRQChr07g0198521 Helianthus annuus HOM05D005165 ORTHO05D006361 6.1e-19 101.3 74 66.2
PRCOL_00000773 Prasinoderma coloniale HOM05D005165 ORTHO05D006361 3.9e-18 98.6 138 36.2
SHI34979 Sapria himalayana HOM05D005165 ORTHO05D006361 1.7e-16 93.2 133 41.4
MCO03G113 Micromonas commoda HOM05D005165 ORTHO05D006361 6.5e-13 81.3 141 31.2
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 4.2e-12 78.6 61 62.3
RcHm_v2.0_Chr6g0271351 Rosa chinensis HOM05D005165 ORTHO05D006361 2.3e-10 72.8 77 51.9
vmacro07283 Vaccinium macrocarpon HOM05D000340 ORTHO05D012132 5.7e-09 68.2 166 30.7
Os07g0517400 Oryza sativa ssp. japonica HOM05D005165 ORTHO05D006361 7.5e-09 67.8 204 29.4
RcHm_v2.0_Chr5g0054711 Rosa chinensis HOM05D005165 ORTHO05D006361 3.7e-08 65.5 53 60.4
FAN25G2437 Fragaria x ananassa HOM05D005165 ORTHO05D006361 1.1e-07 63.9 146 34.9
CiPaw.02G155600 Carya illinoinensis HOM05D005165 ORTHO05D006361 1.8e-07 63.2 83 47.0
Cfa022813 Carpinus fangiana HOM05D005165 ORTHO05D006361 2.7e-06 59.3 175 27.4


User provided reference genes

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