Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr10.2178 Acer truncatum HOM05D003428 ORTHO05D004131 3.1e-184 648.3 314 100.0
Thecc.06G217400 Theobroma cacao HOM05D003428 ORTHO05D004131 5.3e-144 514.6 312 79.8
Ciclev10014053m.g Citrus clementina HOM05D003428 ORTHO05D004131 2.6e-143 512.3 312 78.8
Manes.16G010100 Manihot esculenta HOM05D003428 ORTHO05D004131 2.9e-142 508.8 312 79.5
QL05p074042 Quercus lobata HOM05D003428 ORTHO05D004131 1.4e-141 506.5 312 80.4
Duzib235G0114 Durio zibethinus HOM05D003428 ORTHO05D004131 2.3e-139 499.2 312 77.6
CiPaw.09G089300 Carya illinoinensis HOM05D003428 ORTHO05D004131 5.1e-139 498.0 312 79.2
Gohir.D06G153100 Gossypium hirsutum HOM05D003428 ORTHO05D004131 1.5e-138 496.5 312 76.9
Gorai.010G179100 Gossypium raimondii HOM05D003428 ORTHO05D004131 1.5e-138 496.5 312 76.9
Gohir.A06G147300 Gossypium hirsutum HOM05D003428 ORTHO05D004131 2.0e-138 496.1 312 76.9
Potri.004G018700 Populus trichocarpa HOM05D003428 ORTHO05D004131 2.8e-137 492.3 312 77.2
Potri.011G000200 Populus trichocarpa HOM05D003428 ORTHO05D004131 4.8e-137 491.5 312 76.6
Prupe.4G024000 Prunus persica HOM05D003428 ORTHO05D004131 6.9e-136 487.6 313 77.3
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 1.5e-135 486.5 311 77.5
Dinv20034 Davidia involucrata HOM05D003428 ORTHO05D004131 2.0e-135 486.1 312 76.0
Glyma.07G259000 Glycine max HOM05D003428 ORTHO05D004131 2.6e-135 485.7 311 76.8
Glyma.17G015200 Glycine max HOM05D003428 ORTHO05D004131 4.5e-135 485.0 311 77.2
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 1.3e-134 483.4 346 70.2
Ca_21094_v3 Cicer arietinum L. HOM05D003428 ORTHO05D004131 3.8e-134 481.9 310 75.5
Ca_30202_v3 Cicer arietinum L. HOM05D003428 ORTHO05D004131 3.8e-134 481.9 310 75.5
TWI38G0331 Tripterygium wilfordii HOM05D003428 ORTHO05D004131 3.8e-134 481.9 312 76.0
Dinv13872 Davidia involucrata HOM05D003428 ORTHO05D004131 6.5e-134 481.1 312 76.6
CSS0004273 Camellia sinensis var. sinensis HOM05D003428 ORTHO05D004131 1.4e-133 479.9 314 74.5
CSS0019319 Camellia sinensis var. sinensis HOM05D003428 ORTHO05D004131 1.4e-133 479.9 314 74.5
Lalb_Chr15g0087431 Lupinus albus HOM05D003428 ORTHO05D004131 1.4e-133 479.9 308 76.3
MD10G1317800 Malus domestica HOM05D003428 ORTHO05D004131 2.5e-133 479.2 312 76.0
MD05G1342900 Malus domestica HOM05D003428 ORTHO05D004131 3.2e-133 478.8 306 76.5
ClCG03G004880 Citrullus lanatus HOM05D003428 ORTHO05D004131 4.2e-133 478.4 312 74.4
Peaxi162Scf00262g00059 Petunia axillaris HOM05D003428 ORTHO05D004131 1.2e-132 476.9 312 74.4
TAR624G0497 Trochodendron aralioides HOM05D003428 ORTHO05D004131 1.6e-132 476.5 314 75.8
MELO3C002470.2 Cucumis melo HOM05D003428 ORTHO05D004131 3.6e-132 475.3 312 74.0
VMungo1215G2587 Vigna mungo HOM05D003428 ORTHO05D004131 3.6e-132 475.3 311 74.9
CSS0033465 Camellia sinensis var. sinensis HOM05D003428 ORTHO05D004131 4.7e-132 474.9 308 75.6
CiPaw.10G069400 Carya illinoinensis HOM05D003428 ORTHO05D004131 4.7e-132 474.9 312 75.6
Lj4g0005527 Lotus japonicus HOM05D003428 ORTHO05D004131 6.1e-132 474.6 309 74.8
Nn1g03583 Nelumbo nucifera HOM05D003428 ORTHO05D004131 6.1e-132 474.6 313 74.1
Phvul.003G077100 Phaseolus vulgaris HOM05D003428 ORTHO05D004131 6.1e-132 474.6 311 74.9
Psat4g063040 Pisum sativum HOM05D003428 ORTHO05D004131 6.1e-132 474.6 310 75.2
TPR.G37012 Trifolium pratense HOM05D003428 ORTHO05D004131 1.4e-131 473.4 310 74.8
Cfa000250 Carpinus fangiana HOM05D003428 ORTHO05D004131 2.3e-131 472.6 302 77.5
Medtr4g131850 Medicago truncatula HOM05D003428 ORTHO05D004131 2.3e-131 472.6 310 75.2
Sed0007172 Sechium edule HOM05D003428 ORTHO05D004131 2.3e-131 472.6 312 74.0
GSVIVG01012655001 Vitis vinifera HOM05D003428 ORTHO05D004131 2.3e-131 472.6 312 76.3
CsaV3_1G010910 Cucumis sativus L. HOM05D003428 ORTHO05D004131 3.0e-131 472.2 312 73.4
FvH4_3g02460 Fragaria vesca HOM05D003428 ORTHO05D004131 1.5e-130 469.9 309 74.4
THA.LOC104809511 Tarenaya hassleriana HOM05D003428 ORTHO05D004131 2.0e-130 469.5 317 73.2
Solyc02g080340.3 Solanum lycopersicum HOM05D003428 ORTHO05D004131 2.6e-130 469.2 311 73.3
Sopen02g025040 Solanum pennellii HOM05D003428 ORTHO05D004131 2.6e-130 469.2 311 73.3
RcHm_v2.0_Chr5g0003711 Rosa chinensis HOM05D003428 ORTHO05D004131 3.3e-130 468.8 310 74.2
PGSC0003DMG400002079 Solanum tuberosum HOM05D003428 ORTHO05D004131 7.4e-130 467.6 311 73.3
FAN25G3463 Fragaria x ananassa HOM05D003428 ORTHO05D004131 2.8e-129 465.7 309 74.1
Rhsim02G0110400 Rhododendron simsii HOM05D003428 ORTHO05D004131 3.7e-129 465.3 313 73.5
CARHR050470 Cardamine hirsuta HOM05D003428 ORTHO05D004131 4.8e-129 464.9 311 72.7
CAN.G569.22 Capsicum annuum HOM05D003428 ORTHO05D004131 6.3e-129 464.5 312 72.8
Actinidia11848 Actinidia chinensis HOM05D003428 ORTHO05D004131 8.2e-129 464.2 309 74.8
arahy.Tifrunner.gnm1.ann1.YW42SM Arachis hypogaea HOM05D003428 ORTHO05D004131 8.2e-129 464.2 311 74.0
BolC9t54926H Brassica oleracea HOM05D003428 ORTHO05D004131 1.1e-128 463.8 314 72.3
arahy.Tifrunner.gnm1.ann1.D341M5 Arachis hypogaea HOM05D003428 ORTHO05D004131 1.4e-128 463.4 311 74.0
Eucgr.E04091 Eucalyptus grandis HOM05D003428 ORTHO05D004131 1.4e-128 463.4 314 72.9
Thhalv10023219m.g Eutrema salsugineum HOM05D003428 ORTHO05D004131 2.4e-128 462.6 313 71.9
vmacro15816 Vaccinium macrocarpon HOM05D003428 ORTHO05D004131 3.1e-128 462.2 313 73.2
BcaB07g31289 Brassica carinata HOM05D003428 ORTHO05D004131 4.1e-128 461.8 314 72.0
BcaC04g22357 Brassica carinata HOM05D003428 ORTHO05D004131 4.1e-128 461.8 314 72.0
A09p16630 Brassica napus HOM05D003428 ORTHO05D004131 4.1e-128 461.8 314 72.0
C09p20200 Brassica napus HOM05D003428 ORTHO05D004131 4.1e-128 461.8 314 72.0
BraA09t37300Z Brassica rapa HOM05D003428 ORTHO05D004131 4.1e-128 461.8 314 72.0
Sp2g02690 Schrenkiella parvula HOM05D003428 ORTHO05D004131 9.1e-128 460.7 314 71.3
Carub.0002s0319 Capsella rubella HOM05D003428 ORTHO05D004131 5.9e-127 458.0 315 71.4
AT1G61850 Arabidopsis thaliana HOM05D003428 ORTHO05D004131 1.0e-126 457.2 316 71.2
DCAR_004205 Daucus carota HOM05D003428 ORTHO05D004131 1.0e-126 457.2 307 72.6
Nitab4.5_0010096g0010 Nicotiana tabacum HOM05D003428 ORTHO05D004131 1.0e-126 457.2 312 71.5
Gohir.A05G168700 Gossypium hirsutum HOM05D003428 ORTHO05D004131 6.5e-126 454.5 314 72.0
Migut.M01297 Erythranthe guttata HOM05D003428 ORTHO05D004131 8.5e-126 454.1 311 72.7
Gohir.D10G014100 Gossypium hirsutum HOM05D003428 ORTHO05D004131 4.2e-125 451.8 312 71.2
AL2G14210 Arabidopsis lyrata HOM05D003428 ORTHO05D004131 5.5e-125 451.4 316 69.9
Gohir.D05G171900 Gossypium hirsutum HOM05D003428 ORTHO05D004131 5.5e-125 451.4 314 71.7
Gorai.009G177000 Gossypium raimondii HOM05D003428 ORTHO05D004131 7.2e-125 451.1 314 71.7
PGR042G0159 Punica granatum HOM05D003428 ORTHO05D004131 9.4e-125 450.7 317 70.7
Aa31LG1G3130 Aethionema arabicum HOM05D003428 ORTHO05D004131 1.2e-124 450.3 312 69.9
Aa31LG2G8980 Aethionema arabicum HOM05D003428 ORTHO05D004131 1.4e-123 446.8 310 70.6
TWI38G0316 Tripterygium wilfordii HOM05D003428 ORTHO05D004131 1.4e-123 446.8 311 71.4
Gorai.011G015900 Gossypium raimondii HOM05D003428 ORTHO05D004131 1.1e-122 443.7 314 70.4
Gohir.A10G014100 Gossypium hirsutum HOM05D003428 ORTHO05D004131 2.0e-122 443.0 314 70.1
Manes.17G037100 Manihot esculenta HOM05D003428 ORTHO05D004131 2.0e-122 443.0 312 71.2
SGA_v2.0_scaffold7G03871 Striga asiatica HOM05D003428 ORTHO05D004131 2.0e-122 443.0 309 68.9
Cc09_g01930 Coffea canephora HOM05D003428 ORTHO05D004131 1.7e-121 439.9 312 69.2
SalBow3G0064 Salvia bowleyana HOM05D003428 ORTHO05D004131 2.2e-121 439.5 310 69.7
MBI02_g28339_MAGBIO Magnolia biondii HOM05D003428 ORTHO05D004131 3.7e-121 438.7 314 69.4
SalBow3G1270 Salvia bowleyana HOM05D003428 ORTHO05D004131 6.3e-121 438.0 310 69.4
Hund23486 Selenicereus undatus HOM05D003428 ORTHO05D004131 2.4e-120 436.0 310 69.4
Aqoxy7G03064 Aquilegia oxysepala HOM05D003428 ORTHO05D004131 5.3e-120 434.9 314 69.1
AUR62012675 Chenopodium quinoa HOM05D003428 ORTHO05D004131 2.0e-119 433.0 311 68.5
Oeu063903.1 Olea europaea HOM05D003428 ORTHO05D004131 2.0e-119 433.0 313 69.6
PSO832G0075 Papaver somniferum HOM05D003428 ORTHO05D004131 2.6e-119 432.6 314 69.4
AUR62021981 Chenopodium quinoa HOM05D003428 ORTHO05D004131 5.9e-119 431.4 311 68.2
Zm00001eb322860 Zea mays HOM05D003428 ORTHO05D004131 2.9e-118 429.1 316 69.6
ECA236G4773 Erigeron canadensis HOM05D003428 ORTHO05D004131 3.8e-118 428.7 312 70.5
PSO210G3795 Papaver somniferum HOM05D003428 ORTHO05D004131 3.8e-118 428.7 314 68.8
Sc17g0007210 Simmondsia chinensis HOM05D003428 ORTHO05D004131 3.8e-118 428.7 311 68.8
Os07g0520900 Oryza sativa ssp. japonica HOM05D003428 ORTHO05D004131 2.5e-117 426.0 314 68.5
HanXRQChr05g0129871 Helianthus annuus HOM05D003428 ORTHO05D004131 9.4e-117 424.1 313 69.0
arahy.Tifrunner.gnm1.ann1.IL23TX Arachis hypogaea HOM05D003428 ORTHO05D004131 1.2e-116 423.7 311 69.5
EL10Ac8g20020 Beta vulgaris HOM05D003428 ORTHO05D004131 1.6e-116 423.3 311 66.6
arahy.Tifrunner.gnm1.ann1.FVAC65 Arachis hypogaea HOM05D003428 ORTHO05D004131 3.6e-116 422.2 311 69.1
HanXRQChr15g0471381 Helianthus annuus HOM05D003428 ORTHO05D004131 6.1e-116 421.4 305 68.5
FAN21G0107 Fragaria x ananassa HOM05D003428 ORTHO05D004131 3.0e-115 419.1 313 68.7
ATR0752G216 Amborella trichopoda HOM05D003428 ORTHO05D004131 5.2e-115 418.3 316 69.0
Lsat_1_v5_gn_7_17340 Lactuca sativa HOM05D003428 ORTHO05D004131 7.5e-114 414.5 308 69.5
HPP92_017608 Vanilla planifolia HOM05D003428 ORTHO05D004131 6.3e-113 411.4 313 66.8
Lj2C271T3 Lonicera japonica HOM05D003428 ORTHO05D004131 2.7e-108 396.0 311 66.6
arahy.Tifrunner.gnm1.ann1.0P9V0B Arachis hypogaea HOM05D003428 ORTHO05D004131 1.8e-107 393.3 321 65.4
Ah.14g088090 Amaranthus hybridus HOM05D003428 ORTHO05D004131 6.8e-107 391.3 303 63.7
Ah.09g235070 Amaranthus hybridus HOM05D003428 ORTHO05D004131 8.3e-105 384.4 333 59.2
COL.COLO4_31743 Corchorus olitorius HOM05D003428 ORTHO05D004131 3.5e-103 379.0 280 68.2
CDE05G1926 Ceratophyllum demersum HOM05D003428 ORTHO05D004131 7.7e-103 377.9 313 62.3
Hma1.2p1_3566F.1_g336810 Hydrangea macrophylla HOM05D003428 ORTHO05D004131 3.8e-102 375.6 266 69.2
ECA248G3692 Erigeron canadensis HOM05D003428 ORTHO05D004131 2.2e-97 359.8 310 60.3
HanXRQChr01g0003641 Helianthus annuus HOM05D003428 ORTHO05D004131 8.0e-92 341.3 313 57.8
unitig_748.g7971 Utricularia gibba HOM05D003428 ORTHO05D004131 4.4e-90 335.5 309 58.3
AagrBONN_evm.TU.Sc2ySwM_228.3176 Anthoceros agrestis HOM05D003428 ORTHO05D004131 1.2e-87 327.4 313 54.6
SMO367G0744 Selaginella moellendorffii HOM05D003428 ORTHO05D004131 3.0e-86 322.8 307 54.1
Pp3c14_24720 Physcomitrium patens HOM05D003428 ORTHO05D004131 1.5e-82 310.5 313 52.4
Mapoly0096s0015 Marchantia polymorpha HOM05D003428 ORTHO05D004131 5.8e-82 308.5 316 50.0
Hma1.2p1_1622F.1_g294060 Hydrangea macrophylla HOM05D003428 ORTHO05D004131 3.3e-77 292.7 205 68.8
Duzib192G0759 Durio zibethinus HOM05D003428 ORTHO05D004131 2.9e-73 279.6 149 85.2
Nn7g36944 Nelumbo nucifera HOM05D003428 ORTHO05D004131 3.4e-66 256.1 171 72.5
Gohir.A09G069400 Gossypium hirsutum HOM05D003428 ORTHO05D004131 7.8e-63 245.0 139 77.7
Cpa.g.c44049 Carica papaya HOM05D003428 ORTHO05D004131 1.3e-62 244.2 154 77.3
Gohir.D09G069300 Gossypium hirsutum HOM05D003428 ORTHO05D004131 6.6e-62 241.9 139 77.0
Gorai.006G083500 Gossypium raimondii HOM05D003428 ORTHO05D004131 6.6e-62 241.9 139 77.0
Lsat_1_v5_gn_1_124260 Lactuca sativa HOM05D003428 ORTHO05D004131 2.5e-61 240.0 134 79.1
Gohir.D09G069200 Gossypium hirsutum HOM05D003428 ORTHO05D004131 4.0e-59 232.6 135 75.6
Gorai.006G083400 Gossypium raimondii HOM05D003428 ORTHO05D004131 4.0e-59 232.6 135 75.6
Gohir.A09G069300 Gossypium hirsutum HOM05D003428 ORTHO05D004131 2.6e-58 229.9 135 74.8
Hund21392 Selenicereus undatus HOM05D003428 ORTHO05D004131 4.4e-58 229.2 218 56.0
CBR_g8995 Chara braunii HOM05D003428 ORTHO05D004131 4.9e-57 225.7 203 51.2
CDE05G1211 Ceratophyllum demersum HOM05D003428 ORTHO05D004131 3.0e-54 216.5 166 64.5
Nn1g02123 Nelumbo nucifera HOM05D003428 ORTHO05D004131 4.0e-51 206.1 162 62.3
Lj1A1228G69 Lonicera japonica HOM05D003428 ORTHO05D004131 6.0e-47 192.2 93 93.5
COL.COLO4_18253 Corchorus olitorius HOM05D003428 ORTHO05D004131 1.1e-35 154.8 112 67.9
COL.COLO4_13886 Corchorus olitorius HOM05D003428 ORTHO05D004131 1.4e-35 154.5 111 68.5
MCO07G720 Micromonas commoda HOM05D003428 ORTHO05D004131 5.3e-35 152.5 199 40.7
Cre10.g425100 Chlamydomonas reinhardtii HOM05D003428 ORTHO05D004131 2.6e-34 150.2 142 50.7
COL.COLO4_27539 Corchorus olitorius HOM05D006757 ORTHO05D004651 2.9e-33 146.7 111 65.8
COL.COLO4_07719 Corchorus olitorius HOM05D003428 ORTHO05D004131 1.4e-32 144.4 110 66.4
COL.COLO4_14509 Corchorus olitorius HOM05D000744 ORTHO05D000332 9.3e-32 141.7 117 65.0
Lj1A1228T72 Lonicera japonica HOM05D003428 ORTHO05D004131 1.4e-27 127.9 214 40.7
COL.COLO4_34792 Corchorus olitorius HOM05D003428 ORTHO05D004131 1.8e-27 127.5 116 61.2
COL.COLO4_10528 Corchorus olitorius HOM05D001413 ORTHO05D001385 1.0e-25 121.7 90 64.4
COL.COLO4_09520 Corchorus olitorius HOM05D003428 ORTHO05D004131 3.8e-25 119.8 116 57.8
COL.COLO4_06246 Corchorus olitorius HOM05D003428 ORTHO05D004131 6.3e-20 102.4 63 76.2
Cpa.g.sc198.25 Carica papaya HOM05D003428 ORTHO05D004131 4.1e-19 99.8 49 87.8
Hma1.2p1_2687F.1_g326970 Hydrangea macrophylla HOM05D003428 ORTHO05D004131 5.3e-19 99.4 47 91.5
MSTRG.13150 Avicennia marina HOM05D003428 ORTHO05D004131 2.9e-17 93.6 45 86.7
COL.COLO4_14590 Corchorus olitorius HOM05D003428 ORTHO05D004131 2.9e-17 93.6 69 71.0
COL.COLO4_11116 Corchorus olitorius HOM05D003428 ORTHO05D003450 3.8e-17 93.2 67 73.1
COL.COLO4_06327 Corchorus olitorius HOM05D001098 ORTHO05D002527 3.2e-16 90.1 48 81.2
COL.COLO4_21035 Corchorus olitorius HOM05D002794 ORTHO05D003763 4.2e-16 89.7 67 70.1
COL.COLO4_11467 Corchorus olitorius HOM05D003428 ORTHO05D000332 7.2e-16 89.0 45 88.9
COL.COLO4_14750 Corchorus olitorius HOM05D003428 ORTHO05D004131 7.9e-15 85.5 45 84.4
COL.COLO4_31449 Corchorus olitorius HOM05D001315 ORTHO05D001618 7.9e-15 85.5 53 77.4
VMungo1383G0975 Vigna mungo HOM05D000402 ORTHO05D000263 2.6e-13 80.5 41 82.9
Duzib192G0582 Durio zibethinus HOM05D003428 ORTHO05D004131 4.8e-12 76.3 55 78.2
COL.COLO4_04150 Corchorus olitorius HOM05D003986 ORTHO05D004916 3.5e-10 70.1 36 91.7
Lsat_1_v5_gn_8_26380 Lactuca sativa HOM05D003428 ORTHO05D004131 5.9e-10 69.3 44 68.2
MCO05G170 Micromonas commoda HOM05D003428 ORTHO05D268702 3.8e-09 66.6 130 32.3
COL.COLO4_18537 Corchorus olitorius HOM05D003428 ORTHO05D004131 3.2e-08 63.5 35 82.9
Cpa.g.sc198.26 Carica papaya HOM05D003428 ORTHO05D004131 2.1e-07 60.8 34 85.3
COL.COLO4_31307 Corchorus olitorius HOM05D003428 ORTHO05D004651 6.7e-06 55.8 55 49.1


User provided reference genes

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