Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr10.2104 Acer truncatum HOM05D000013 ORTHO05D052508 7.8e-100 367.1 179 100.0
Ciclev10014386m.g Citrus clementina HOM05D000013 ORTHO05D000011 2.9e-30 136.0 308 31.8
Duzib235G1398 Durio zibethinus HOM05D000013 ORTHO05D000011 2.3e-27 126.3 73 74.0
Gohir.A09G070600 Gossypium hirsutum HOM05D000013 ORTHO05D000011 2.6e-26 122.9 76 71.1
Duzib192G0450 Durio zibethinus HOM05D000013 ORTHO05D000011 1.3e-25 120.6 72 70.8
Gohir.D09G070450 Gossypium hirsutum HOM05D000013 ORTHO05D000011 1.6e-23 113.6 162 43.2
Gorai.006G085100 Gossypium raimondii HOM05D000013 ORTHO05D000011 1.6e-23 113.6 162 43.2
THA.LOC104809543 Tarenaya hassleriana HOM05D000013 ORTHO05D000011 3.5e-23 112.5 75 62.7
Thecc.06G203300 Theobroma cacao HOM05D000013 ORTHO05D000011 3.5e-23 112.5 310 27.1
Gohir.D10G018500 Gossypium hirsutum HOM05D000013 ORTHO05D000011 5.9e-23 111.7 75 62.7
Gorai.011G020500 Gossypium raimondii HOM05D000013 ORTHO05D000011 5.9e-23 111.7 75 62.7
Gohir.A10G018200 Gossypium hirsutum HOM05D000013 ORTHO05D000011 7.7e-23 111.3 307 26.4
Aa31LG2G9250 Aethionema arabicum HOM05D000013 ORTHO05D000011 4.2e-21 105.5 75 60.0
C01p38560 Brassica napus HOM05D000013 ORTHO05D000011 7.2e-21 104.8 75 58.7
Thhalv10023270m.g Eutrema salsugineum HOM05D000013 ORTHO05D000011 7.2e-21 104.8 75 58.7
Gorai.010G253800 Gossypium raimondii HOM05D000013 ORTHO05D000011 7.2e-21 104.8 69 66.7
Manes.16G019142 Manihot esculenta HOM05D000013 ORTHO05D000011 2.1e-20 103.2 73 63.0
BolC1t03817H Brassica oleracea HOM05D000013 ORTHO05D000011 3.6e-20 102.4 75 57.3
AL2G14630 Arabidopsis lyrata HOM05D000013 ORTHO05D000011 4.7e-20 102.1 73 56.2
Sp2g02970 Schrenkiella parvula HOM05D000013 ORTHO05D000011 4.7e-20 102.1 74 58.1
Manes.16G019128 Manihot esculenta HOM05D000013 ORTHO05D000011 6.1e-20 101.7 73 61.6
BcaC09g51231 Brassica carinata HOM05D000013 ORTHO05D000011 8.0e-20 101.3 76 59.2
A01p12710 Brassica napus HOM05D000013 ORTHO05D000011 8.0e-20 101.3 76 59.2
C01p15290 Brassica napus HOM05D000013 ORTHO05D000011 8.0e-20 101.3 76 59.2
BolC1t01482H Brassica oleracea HOM05D000013 ORTHO05D000011 8.0e-20 101.3 76 59.2
BcaC02g10556 Brassica carinata HOM05D000013 ORTHO05D000011 1.4e-19 100.5 75 56.0
C04p27470 Brassica napus HOM05D000013 ORTHO05D000011 1.4e-19 100.5 75 56.0
BolC4t24285H Brassica oleracea HOM05D000013 ORTHO05D000011 1.4e-19 100.5 75 56.0
BcaC06g31852 Brassica carinata HOM05D000013 ORTHO05D000011 1.8e-19 100.1 72 59.7
BraA01t01213Z Brassica rapa HOM05D000013 ORTHO05D000011 1.8e-19 100.1 76 57.9
PGR042G3190 Punica granatum HOM05D000013 ORTHO05D000011 2.3e-19 99.8 72 62.5
A03p67070 Brassica napus HOM05D000013 ORTHO05D000011 3.0e-19 99.4 75 54.7
BraA01t02772Z Brassica rapa HOM05D000013 ORTHO05D000011 3.0e-19 99.4 75 54.7
Sabra04G0015800 Salix brachista HOM05D000013 ORTHO05D000011 4.0e-19 99.0 74 56.8
Sp7g19520 Schrenkiella parvula HOM05D000013 ORTHO05D000011 4.0e-19 99.0 76 55.3
AL7G32700 Arabidopsis lyrata HOM05D000013 ORTHO05D000011 5.2e-19 98.6 76 55.3
Aa31LG6G3420 Aethionema arabicum HOM05D000013 ORTHO05D000011 6.8e-19 98.2 76 53.9
AT4G21390 Arabidopsis thaliana HOM05D000013 ORTHO05D000011 8.8e-19 97.8 76 55.3
BcaB04g20346 Brassica carinata HOM05D000013 ORTHO05D000011 8.8e-19 97.8 72 58.3
CARHR227990 Cardamine hirsuta HOM05D000013 ORTHO05D000011 8.8e-19 97.8 76 53.9
Potri.004G027800 Populus trichocarpa HOM05D000013 ORTHO05D000011 1.2e-18 97.4 73 54.8
Gohir.D06G212300 Gossypium hirsutum HOM05D000013 ORTHO05D000011 1.5e-18 97.1 97 49.5
A01p30360 Brassica napus HOM05D000013 ORTHO05D000011 2.0e-18 96.7 75 54.7
BraA01t03170Z Brassica rapa HOM05D000013 ORTHO05D000011 2.0e-18 96.7 75 54.7
AUR62014663 Chenopodium quinoa HOM05D000013 ORTHO05D000011 2.0e-18 96.7 77 54.5
Potri.004G027900 Populus trichocarpa HOM05D000013 ORTHO05D000011 2.0e-18 96.7 73 56.2
Potri.011G037300 Populus trichocarpa HOM05D000013 ORTHO05D000011 2.0e-18 96.7 73 54.8
AUR62012532 Chenopodium quinoa HOM05D000013 ORTHO05D000011 3.4e-18 95.9 74 55.4
BcaC06g31853 Brassica carinata HOM05D000013 ORTHO05D000011 4.4e-18 95.5 75 54.7
Carub.0002s0358 Capsella rubella HOM05D000013 ORTHO05D000011 5.7e-18 95.1 73 54.8
CARHR050770 Cardamine hirsuta HOM05D000013 ORTHO05D000011 5.7e-18 95.1 75 54.7
Dinv18973 Davidia involucrata HOM05D000013 ORTHO05D000011 5.7e-18 95.1 75 56.0
QL05p079456 Quercus lobata HOM05D000013 ORTHO05D000011 7.5e-18 94.7 74 59.5
AT1G61610 Arabidopsis thaliana HOM05D000013 ORTHO05D000011 9.8e-18 94.4 71 56.3
Potri.011G037600 Populus trichocarpa HOM05D000013 ORTHO05D000011 1.3e-17 94.0 73 53.4
TAR627G1169 Trochodendron aralioides HOM05D000013 ORTHO05D000011 1.7e-17 93.6 73 58.9
COL.COLO4_31645 Corchorus olitorius HOM05D000013 ORTHO05D000011 3.7e-17 92.4 266 26.7
Oeu024222.1 Olea europaea HOM05D000013 ORTHO05D000011 4.8e-17 92.0 72 55.6
Prupe.4G033200 Prunus persica HOM05D000013 ORTHO05D000011 4.8e-17 92.0 69 59.4
Hund23573 Selenicereus undatus HOM05D000013 ORTHO05D000011 4.8e-17 92.0 74 55.4
Sc05g0008230 Simmondsia chinensis HOM05D000013 ORTHO05D000011 4.8e-17 92.0 76 52.6
EL10Ac8g19962 Beta vulgaris HOM05D000013 ORTHO05D000011 6.3e-17 91.7 75 52.0
Eucgr.E03662 Eucalyptus grandis HOM05D000013 ORTHO05D000011 6.3e-17 91.7 71 59.2
Eucgr.E03659 Eucalyptus grandis HOM05D000013 ORTHO05D000011 1.8e-16 90.1 71 56.3
Gorai.010G147500 Gossypium raimondii HOM05D000013 ORTHO05D000011 2.4e-16 89.7 74 52.7
TWI38G1960 Tripterygium wilfordii HOM05D000013 ORTHO05D000011 3.1e-16 89.4 74 54.1
BolC1t03818H Brassica oleracea HOM05D000013 ORTHO05D000011 4.1e-16 89.0 75 49.3
Gohir.D06G126500 Gossypium hirsutum HOM05D000013 ORTHO05D000011 4.1e-16 89.0 73 53.4
CiPaw.10G114200 Carya illinoinensis HOM05D000013 ORTHO05D000011 5.4e-16 88.6 71 57.7
Gohir.A06G208800 Gossypium hirsutum HOM05D000013 ORTHO05D000011 9.1e-16 87.8 69 55.1
Lj1A1217G69 Lonicera japonica HOM05D000013 ORTHO05D000011 9.1e-16 87.8 70 58.6
Sabra11G0026800 Salix brachista HOM05D000013 ORTHO05D000011 9.1e-16 87.8 69 52.2
Eucgr.E03667 Eucalyptus grandis HOM05D000013 ORTHO05D000011 1.2e-15 87.4 69 55.1
Lj2C278G7 Lonicera japonica HOM05D000013 ORTHO05D000011 1.2e-15 87.4 73 54.8
THA.LOC104806264 Tarenaya hassleriana HOM05D000013 ORTHO05D000011 1.2e-15 87.4 76 51.3
vmacro03767 Vaccinium macrocarpon HOM05D000013 ORTHO05D000011 1.2e-15 87.4 72 52.8
Eucgr.E03663 Eucalyptus grandis HOM05D000013 ORTHO05D000011 1.6e-15 87.0 69 55.1
Eucgr.E03666 Eucalyptus grandis HOM05D000013 ORTHO05D000011 2.0e-15 86.7 71 54.9
MD10G1306600 Malus domestica HOM05D000013 ORTHO05D000011 2.0e-15 86.7 70 58.6
Eucgr.E03671 Eucalyptus grandis HOM05D000013 ORTHO05D000011 2.7e-15 86.3 70 57.1
Eucgr.E03669 Eucalyptus grandis HOM05D000013 ORTHO05D000011 3.5e-15 85.9 70 57.1
Eucgr.E03670 Eucalyptus grandis HOM05D000013 ORTHO05D000011 3.5e-15 85.9 70 57.1
Nn1g06865 Nelumbo nucifera HOM05D000013 ORTHO05D000011 7.7e-15 84.7 73 49.3
Ca_18470_v3 Cicer arietinum L. HOM05D000013 ORTHO05D000011 1.3e-14 84.0 99 42.4
Ca_30069_v3 Cicer arietinum L. HOM05D000013 ORTHO05D000011 1.3e-14 84.0 99 42.4
Cc02_g12130 Coffea canephora HOM05D000013 ORTHO05D000011 1.7e-14 83.6 74 50.0
Aqoxy1G03253 Aquilegia oxysepala HOM05D000013 ORTHO05D000011 1.1e-13 80.9 71 50.7
Dinv40455 Davidia involucrata HOM05D000013 ORTHO05D000011 1.9e-13 80.1 74 45.9
MBI18_g25947_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D000011 1.9e-13 80.1 72 48.6
Phvul.006G194500 Phaseolus vulgaris HOM05D000013 ORTHO05D000011 2.5e-13 79.7 74 48.6
vmacro15850 Vaccinium macrocarpon HOM05D000013 ORTHO05D000011 2.5e-13 79.7 76 52.6
Lj1A1217T70 Lonicera japonica HOM05D000013 ORTHO05D000011 3.2e-13 79.3 68 55.9
MD05G1329600 Malus domestica HOM05D000013 ORTHO05D000011 5.5e-13 78.6 70 51.4
TPR.G15379 Trifolium pratense HOM05D000013 ORTHO05D000011 5.5e-13 78.6 164 32.3
RcHm_v2.0_Chr5g0005641 Rosa chinensis HOM05D000013 ORTHO05D000011 7.2e-13 78.2 71 52.1
DCAR_024882 Daucus carota HOM05D000013 ORTHO05D000011 9.4e-13 77.8 72 47.2
Glyma.13G248800 Glycine max HOM05D000013 ORTHO05D000011 1.2e-12 77.4 73 49.3
Glyma.15G065200 Glycine max HOM05D000013 ORTHO05D000011 1.2e-12 77.4 73 49.3
Manes.17G032400 Manihot esculenta HOM05D000013 ORTHO05D000011 1.2e-12 77.4 71 50.7
Psat7g107240 Pisum sativum HOM05D000013 ORTHO05D000011 1.2e-12 77.4 99 38.4
Lalb_Chr20g0122501 Lupinus albus HOM05D000013 ORTHO05D000011 1.6e-12 77.0 74 48.6
FvH4_3g03590 Fragaria vesca HOM05D000013 ORTHO05D000011 2.1e-12 76.6 69 50.7
FAN21G0614 Fragaria x ananassa HOM05D000013 ORTHO05D000011 3.6e-12 75.9 69 49.3
arahy.Tifrunner.gnm1.ann1.NVX4NR Arachis hypogaea HOM05D000013 ORTHO05D000011 4.7e-12 75.5 74 45.9
ECA248G1072 Erigeron canadensis HOM05D000013 ORTHO05D000011 4.7e-12 75.5 67 47.8
arahy.Tifrunner.gnm1.ann1.YL5GR7 Arachis hypogaea HOM05D000013 ORTHO05D000011 8.0e-12 74.7 74 45.9
FAN16G0353 Fragaria x ananassa HOM05D000013 ORTHO05D000011 8.0e-12 74.7 69 49.3
CiPaw.09G155500 Carya illinoinensis HOM05D000013 ORTHO05D000011 1.0e-11 74.3 71 53.5
Medtr4g091570 Medicago truncatula HOM05D000013 ORTHO05D000011 1.4e-11 73.9 73 46.6
HanXRQChr16g0517111 Helianthus annuus HOM05D000013 ORTHO05D000011 1.8e-11 73.6 70 51.4
Medtr2g011190 Medicago truncatula HOM05D000013 ORTHO05D000011 2.3e-11 73.2 77 49.4
Cpa.g.sc27.172 Carica papaya HOM05D000013 ORTHO05D000011 3.0e-11 72.8 83 49.4
Medtr4g040480 Medicago truncatula HOM05D000013 ORTHO05D000011 5.2e-11 72.0 77 46.8
DCAR_008098 Daucus carota HOM05D000013 ORTHO05D000011 6.8e-11 71.6 71 47.9
HanXRQChr01g0003751 Helianthus annuus HOM05D000013 ORTHO05D000011 1.2e-10 70.9 70 45.7
Lsat_1_v5_gn_1_122540 Lactuca sativa HOM05D000013 ORTHO05D000011 1.2e-10 70.9 78 43.6
PSO541G5011 Papaver somniferum HOM05D000013 ORTHO05D000011 1.2e-10 70.9 73 49.3
Migut.M01240 Erythranthe guttata HOM05D000013 ORTHO05D000011 1.5e-10 70.5 69 49.3
Oeu016140.2 Olea europaea HOM05D000013 ORTHO05D000011 1.5e-10 70.5 55 58.2
CANSAT56G3069 Cannabis sativa HOM05D000013 ORTHO05D000011 2.0e-10 70.1 74 45.9
VMungo0540G1533 Vigna mungo HOM05D000013 ORTHO05D000011 2.6e-10 69.7 74 44.6
Dinv40454 Davidia involucrata HOM05D000013 ORTHO05D000011 3.4e-10 69.3 76 46.1
Glyma.07G188800 Glycine max HOM05D000013 ORTHO05D000011 4.4e-10 68.9 74 41.9
Sed0020717 Sechium edule HOM05D000013 ORTHO05D000011 5.7e-10 68.6 74 41.9
Ca_00221_v3 Cicer arietinum L. HOM05D000013 ORTHO05D000011 1.7e-09 67.0 73 43.8
Solyc10g005440.3 Solanum lycopersicum HOM05D000013 ORTHO05D000011 1.7e-09 67.0 75 44.0
Sopen10g001420 Solanum pennellii HOM05D000013 ORTHO05D000011 1.7e-09 67.0 75 44.0
SGA_v2.0_scaffold7G03904 Striga asiatica HOM05D000013 ORTHO05D000011 6.3e-09 65.1 72 43.1
Psat1g210480 Pisum sativum HOM05D000013 ORTHO05D000011 8.3e-09 64.7 76 44.7
Medtr2g011210 Medicago truncatula HOM05D000013 ORTHO05D000011 1.1e-08 64.3 161 33.5
HPP92_009402 Vanilla planifolia HOM05D000013 ORTHO05D000011 1.8e-08 63.5 67 44.8
PSO063G2429 Papaver somniferum HOM05D000013 ORTHO05D000011 3.1e-08 62.8 71 40.8
Aqoxy4G03202 Aquilegia oxysepala HOM05D000013 ORTHO05D000011 4.1e-08 62.4 69 43.5
PGSC0003DMG400011251 Solanum tuberosum HOM05D000013 ORTHO05D000011 4.1e-08 62.4 70 45.7
Lj6g0011332 Lotus japonicus HOM05D000013 ORTHO05D000011 5.4e-08 62.0 69 47.8
Sed0017130 Sechium edule HOM05D000013 ORTHO05D000011 5.4e-08 62.0 74 39.2
Cpa.g.sc27.173 Carica papaya HOM05D000013 ORTHO05D000011 7.0e-08 61.6 69 44.9
Glyma.08G060500 Glycine max HOM05D000013 ORTHO05D000011 7.0e-08 61.6 74 39.2
VMungo1383G3482 Vigna mungo HOM05D000013 ORTHO05D000011 7.0e-08 61.6 68 42.6
Nn1g09896 Nelumbo nucifera HOM05D000013 ORTHO05D000011 2.7e-07 59.7 75 36.0
CAN.G424.68 Capsicum annuum HOM05D000013 ORTHO05D000011 3.5e-07 59.3 70 44.3
CDE01G0831 Ceratophyllum demersum HOM05D000013 ORTHO05D000011 3.5e-07 59.3 76 36.8
Lalb_Chr20g0122471 Lupinus albus HOM05D000013 ORTHO05D000011 3.5e-07 59.3 66 34.8
HPP92_028155 Vanilla planifolia HOM05D000013 ORTHO05D000011 3.5e-07 59.3 69 40.6
MBI02_g03989_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D000011 4.5e-07 58.9 73 39.7
TAR629G3268 Trochodendron aralioides HOM05D000013 ORTHO05D000011 5.9e-07 58.5 71 39.4
Lalb_Chr20g0122461 Lupinus albus HOM05D000013 ORTHO05D000011 1.0e-06 57.8 71 38.0
Lj6g0027502 Lotus japonicus HOM05D000013 ORTHO05D000011 1.3e-06 57.4 68 38.2
MBI18_g24173_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D000011 1.3e-06 57.4 127 30.7
CSS0018809 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 1.7e-06 57.0 72 37.5
Nn1g09898 Nelumbo nucifera HOM05D000013 ORTHO05D000011 1.7e-06 57.0 71 35.2
Nitab4.5_0001223g0090 Nicotiana tabacum HOM05D000013 ORTHO05D000011 1.7e-06 57.0 71 40.8
VMungo0251G2673 Vigna mungo HOM05D000013 ORTHO05D000011 1.7e-06 57.0 70 42.9
Nitab4.5_0015544g0010 Nicotiana tabacum HOM05D000013 ORTHO05D000011 2.3e-06 56.6 70 41.4
Peaxi162Scf00537g00419 Petunia axillaris HOM05D000013 ORTHO05D000011 2.3e-06 56.6 71 40.8
arahy.Tifrunner.gnm1.ann1.QG99LK Arachis hypogaea HOM05D000013 ORTHO05D000011 2.9e-06 56.2 67 38.8
CSS0024661 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 2.9e-06 56.2 72 38.9
CiPaw.10G115100 Carya illinoinensis HOM05D000013 ORTHO05D000011 2.9e-06 56.2 66 42.4
PGSC0003DMG400013886 Solanum tuberosum HOM05D000013 ORTHO05D000011 2.9e-06 56.2 71 39.4
Eucgr.E00546 Eucalyptus grandis HOM05D000013 ORTHO05D000011 3.8e-06 55.8 67 40.3
Eucgr.E00549 Eucalyptus grandis HOM05D000013 ORTHO05D000011 3.8e-06 55.8 67 40.3
Solyc02g079570.4 Solanum lycopersicum HOM05D000013 ORTHO05D000011 3.8e-06 55.8 71 39.4
Sopen02g024390 Solanum pennellii HOM05D000013 ORTHO05D000011 3.8e-06 55.8 71 39.4
Thecc.06G203600 Theobroma cacao HOM05D000013 ORTHO05D000011 5.0e-06 55.5 71 36.6
Phvul.005G110400 Phaseolus vulgaris HOM05D000038 ORTHO05D000689 6.6e-06 55.1 72 40.3
Sabra05G0024600 Salix brachista HOM05D000013 ORTHO05D001595 6.6e-06 55.1 71 39.4
arahy.Tifrunner.gnm1.ann1.F8EDYM Arachis hypogaea HOM05D000038 ORTHO05D000689 8.6e-06 54.7 66 42.4
COL.COLO4_10259 Corchorus olitorius HOM05D000013 ORTHO05D000011 8.6e-06 54.7 70 45.7


User provided reference genes

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