Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr10.2052 Acer truncatum HOM05D005126 ORTHO05D006169 2.0e-256 888.6 472 100.0
Ciclev10007263m.g Citrus clementina HOM05D005126 ORTHO05D006169 1.0e-138 497.7 482 60.2
Duzib192G0985 Durio zibethinus HOM05D005126 ORTHO05D006169 2.9e-122 443.0 507 55.8
Thecc.06G207200 Theobroma cacao HOM05D005126 ORTHO05D006169 4.0e-119 432.6 507 55.4
Potri.004G030500 Populus trichocarpa HOM05D005126 ORTHO05D006169 1.5e-118 430.6 511 52.3
CiPaw.09G152800 Carya illinoinensis HOM05D005126 ORTHO05D006169 3.9e-114 416.0 496 52.0
Haze_06662 Corylus avellana HOM05D005126 ORTHO05D006169 8.6e-114 414.8 513 51.1
Cfa000280 Carpinus fangiana HOM05D005126 ORTHO05D006169 6.2e-112 408.7 511 50.7
COL.COLO4_33008 Corchorus olitorius HOM05D005126 ORTHO05D006169 1.1e-111 407.9 499 53.1
QL05p077365 Quercus lobata HOM05D005126 ORTHO05D006169 2.4e-108 396.7 515 51.5
Dinv17855 Davidia involucrata HOM05D005126 ORTHO05D006169 6.0e-107 392.1 501 51.7
Potri.011G032200 Populus trichocarpa HOM05D005126 ORTHO05D006169 2.3e-103 380.2 512 49.4
Duzib160G0882 Durio zibethinus HOM05D005126 ORTHO05D006169 3.7e-101 372.9 507 51.9
TWI63G0986 Tripterygium wilfordii HOM05D005126 ORTHO05D006169 3.2e-100 369.8 509 48.7
TAR624G1039 Trochodendron aralioides HOM05D005126 ORTHO05D006169 1.6e-99 367.5 526 45.8
Sabra11G0025300 Salix brachista HOM05D005126 ORTHO05D006169 3.9e-98 362.8 511 47.6
Gohir.A10G017400 Gossypium hirsutum HOM05D005126 ORTHO05D006169 1.1e-97 361.3 467 51.0
Sabra11G0019400 Salix brachista HOM05D005126 ORTHO05D006169 4.0e-95 352.8 512 46.7
Gohir.D06G212500 Gossypium hirsutum HOM05D005126 ORTHO05D006169 4.2e-92 342.8 373 59.0
Gorai.010G253600 Gossypium raimondii HOM05D005126 ORTHO05D006169 6.0e-91 339.0 373 58.4
Prupe.4G030200 Prunus persica HOM05D005126 ORTHO05D006169 1.1e-89 334.7 512 47.3
Glyma.07G187500 Glycine max HOM05D005126 ORTHO05D006169 4.4e-86 322.8 485 45.6
Lalb_Chr09g0327171 Lupinus albus HOM05D005126 ORTHO05D006169 7.6e-86 322.0 486 46.7
MD05G1335200 Malus domestica HOM05D005126 ORTHO05D006169 7.6e-86 322.0 495 47.3
CANSAT35G0768 Cannabis sativa HOM05D005126 ORTHO05D006169 1.9e-84 317.4 468 46.2
MD10G1310700 Malus domestica HOM05D005126 ORTHO05D006169 4.2e-84 316.2 491 47.7
THA.LOC104809525 Tarenaya hassleriana HOM05D005126 ORTHO05D006169 7.8e-83 312.0 484 44.2
Lj4g0001880 Lotus japonicus HOM05D005126 ORTHO05D006169 1.7e-82 310.8 499 43.9
VMungo0251G0970 Vigna mungo HOM05D005126 ORTHO05D006169 3.9e-82 309.7 419 49.4
Nn1g03751 Nelumbo nucifera HOM05D005126 ORTHO05D006169 3.6e-80 303.1 504 43.8
FvH4_3g03041 Fragaria vesca HOM05D005126 ORTHO05D006169 8.1e-80 302.0 343 55.4
Phvul.002G219000 Phaseolus vulgaris HOM05D005126 ORTHO05D006169 8.1e-80 302.0 487 43.1
Gohir.A06G208600 Gossypium hirsutum HOM05D005126 ORTHO05D006169 1.1e-79 301.6 375 54.9
Ca_18455_v3 Cicer arietinum L. HOM05D005126 ORTHO05D006169 1.8e-79 300.8 490 44.3
RcHm_v2.0_Chr5g0004701 Rosa chinensis HOM05D005126 ORTHO05D006169 3.1e-79 300.1 343 56.0
Manes.15G164500 Manihot esculenta HOM05D005126 ORTHO05D006169 5.3e-79 299.3 309 57.9
FAN21G2838 Fragaria x ananassa HOM05D005126 ORTHO05D006169 6.9e-79 298.9 343 55.1
Glyma.08G061700 Glycine max HOM05D005126 ORTHO05D006169 2.2e-77 293.9 485 44.9
TPR.G13921 Trifolium pratense HOM05D005126 ORTHO05D006169 8.4e-77 292.0 484 43.4
Medtr4g092040 Medicago truncatula HOM05D005126 ORTHO05D006169 1.1e-73 281.6 482 43.4
GSVIVG01006404001 Vitis vinifera HOM05D005126 ORTHO05D006169 1.9e-73 280.8 458 45.6
Psat7g105840 Pisum sativum HOM05D005126 ORTHO05D006169 7.4e-73 278.9 488 41.6
arahy.Tifrunner.gnm1.ann1.JX13SW Arachis hypogaea HOM05D005126 ORTHO05D006169 8.1e-72 275.4 370 49.7
arahy.Tifrunner.gnm1.ann1.7M140W Arachis hypogaea HOM05D005126 ORTHO05D006169 1.3e-69 268.1 370 48.6
FAN25G1045 Fragaria x ananassa HOM05D005126 ORTHO05D006169 2.9e-69 266.9 343 51.9
AL2G14430 Arabidopsis lyrata HOM05D005126 ORTHO05D006169 1.4e-68 264.6 484 40.9
Carub.0002s0337 Capsella rubella HOM05D005126 ORTHO05D006169 1.3e-66 258.1 448 41.1
Hma1.2p1_0809F.1_g221780 Hydrangea macrophylla HOM05D005126 ORTHO05D006169 3.0e-66 256.9 368 48.6
MELO3C007347.2 Cucumis melo HOM05D005126 ORTHO05D006169 6.7e-66 255.8 380 47.6
CsaV3_6G049470 Cucumis sativus L. HOM05D005126 ORTHO05D006169 6.2e-64 249.2 397 45.6
BcaB04g20363 Brassica carinata HOM05D005126 ORTHO05D006169 8.2e-64 248.8 466 38.6
Eucgr.H00119 Eucalyptus grandis HOM05D005126 ORTHO05D006169 1.8e-63 247.7 514 39.1
CARHR050640 Cardamine hirsuta HOM05D005126 ORTHO05D006169 9.0e-63 245.4 457 40.7
Thhalv10023224m.g Eutrema salsugineum HOM05D005126 ORTHO05D006169 1.3e-61 241.5 499 39.7
Gohir.D10G017600 Gossypium hirsutum HOM05D005126 ORTHO05D006169 1.1e-60 238.4 464 39.9
Gorai.011G019500 Gossypium raimondii HOM05D005126 ORTHO05D006169 1.1e-60 238.4 464 39.9
AT1G61690 Arabidopsis thaliana HOM05D005126 ORTHO05D006169 2.5e-60 237.3 433 41.6
Actinidia05547 Actinidia chinensis HOM05D005126 ORTHO05D006169 3.5e-59 233.4 361 45.7
ClCG01G022310 Citrullus lanatus HOM05D005126 ORTHO05D006169 1.8e-58 231.1 365 45.5
Sp2g02860 Schrenkiella parvula HOM05D005126 ORTHO05D006169 9.7e-57 225.3 464 37.7
Actinidia26962 Actinidia chinensis HOM05D005126 ORTHO05D006169 1.6e-56 224.6 342 48.2
Aa31LG2G9130 Aethionema arabicum HOM05D005126 ORTHO05D006169 1.6e-56 224.6 449 39.0
TAR626G1585 Trochodendron aralioides HOM05D005126 ORTHO05D006169 2.8e-56 223.8 407 41.3
Sed0023382 Sechium edule HOM05D005126 ORTHO05D006169 8.2e-56 222.2 361 46.0
CAN.G424.91 Capsicum annuum HOM05D005126 ORTHO05D006169 1.7e-53 214.5 365 43.6
C01p38950 Brassica napus HOM05D005126 ORTHO05D006169 3.8e-53 213.4 491 37.3
PGR031G2928 Punica granatum HOM05D005126 ORTHO05D006169 3.8e-53 213.4 490 38.8
BolC1t03845H Brassica oleracea HOM05D005126 ORTHO05D006169 6.5e-53 212.6 491 37.3
CSS0041207 Camellia sinensis var. sinensis HOM05D005126 ORTHO05D006169 3.2e-52 210.3 339 43.4
CSS0033857 Camellia sinensis var. sinensis HOM05D005126 ORTHO05D006169 1.2e-51 208.4 379 41.4
A01p30560 Brassica napus HOM05D005126 ORTHO05D006169 3.9e-50 203.4 459 36.2
BraA01t03188Z Brassica rapa HOM05D005126 ORTHO05D006169 3.9e-50 203.4 459 36.2
DCAR_004173 Daucus carota HOM05D005126 ORTHO05D006169 2.0e-49 201.1 358 43.3
Peaxi162Scf00931g00055 Petunia axillaris HOM05D005126 ORTHO05D006169 3.7e-48 196.8 340 42.6
MBI07_g11719_MAGBIO Magnolia biondii HOM05D005126 ORTHO05D006169 4.8e-48 196.4 581 32.2
vmacro03741 Vaccinium macrocarpon HOM05D005126 ORTHO05D006169 6.3e-48 196.1 401 39.7
Sopen02g024620 Solanum pennellii HOM05D005126 ORTHO05D006169 2.4e-47 194.1 338 41.1
Nitab4.5_0000503g0050 Nicotiana tabacum HOM05D005126 ORTHO05D006169 4.1e-47 193.4 433 37.4
Aqoxy4G01910 Aquilegia oxysepala HOM05D005126 ORTHO05D006169 7.7e-46 189.1 555 31.7
Sc05g0008390 Simmondsia chinensis HOM05D005126 ORTHO05D006169 5.0e-45 186.4 359 44.0
PGSC0003DMG400021720 Solanum tuberosum HOM05D005126 ORTHO05D006169 5.0e-45 186.4 337 40.1
PSO210G4646 Papaver somniferum HOM05D005126 ORTHO05D006169 8.5e-45 185.7 427 37.2
Hund23540 Selenicereus undatus HOM05D005126 ORTHO05D006169 3.2e-44 183.7 339 41.3
Nitab4.5_0006456g0050 Nicotiana tabacum HOM05D005126 ORTHO05D006169 5.5e-44 183.0 341 39.0
Lj2C276T6 Lonicera japonica HOM05D005126 ORTHO05D006169 2.1e-43 181.0 414 37.4
CDE01G0539 Ceratophyllum demersum HOM05D005126 ORTHO05D006169 1.4e-42 178.3 345 41.4
AUR62000477 Chenopodium quinoa HOM05D005126 ORTHO05D006169 8.8e-42 175.6 342 40.1
Rhsim13G0163000 Rhododendron simsii HOM05D005126 ORTHO05D006169 1.5e-41 174.9 410 37.8
PSO832G1831 Papaver somniferum HOM05D005126 ORTHO05D006169 2.0e-41 174.5 476 32.6
Ah.06g190720 Amaranthus hybridus HOM05D005126 ORTHO05D006169 3.3e-41 173.7 375 37.3
AUR62006818 Chenopodium quinoa HOM05D005126 ORTHO05D006169 1.3e-40 171.8 339 38.9
Migut.N00381 Erythranthe guttata HOM05D005126 ORTHO05D006169 2.8e-40 170.6 342 41.2
SalBow4G2671 Salvia bowleyana HOM05D005126 ORTHO05D006169 4.8e-40 169.9 374 36.6
Zm00001eb245580 Zea mays HOM05D005126 ORTHO05D006169 1.1e-39 168.7 399 36.6
Os03g0669800 Oryza sativa ssp. japonica HOM05D005126 ORTHO05D006169 4.1e-39 166.8 547 32.0
Cc02_g11860 Coffea canephora HOM05D005126 ORTHO05D006169 9.1e-39 165.6 424 37.5
Oeu015946.3 Olea europaea HOM05D005126 ORTHO05D006169 5.9e-38 162.9 364 36.0
Lsat_1_v5_gn_7_18540 Lactuca sativa HOM05D005126 ORTHO05D006169 2.9e-37 160.6 381 35.7
ATR0804G089 Amborella trichopoda HOM05D005126 ORTHO05D006169 1.4e-36 158.3 510 31.8
SGA_v2.0_scaffold216G42402 Striga asiatica HOM05D005126 ORTHO05D006169 2.5e-36 157.5 383 35.2
EL10Ac4g09560 Beta vulgaris HOM05D005126 ORTHO05D006169 5.5e-36 156.4 312 37.8
MSTRG.4220 Avicennia marina HOM05D005126 ORTHO05D006169 3.6e-35 153.7 457 31.9
ECA236G2220 Erigeron canadensis HOM05D005126 ORTHO05D006169 1.4e-34 151.8 419 32.2
Oeu045309.1 Olea europaea HOM05D005126 ORTHO05D006169 5.2e-34 149.8 423 33.6
GSVIVG01006464001 Vitis vinifera HOM05D005126 ORTHO05D006169 2.8e-32 144.1 163 55.2
unitig_736.g22481 Utricularia gibba HOM05D005126 ORTHO05D006169 3.7e-32 143.7 391 33.0
SEGI_24274 Sequoiadendron giganteum HOM05D005126 ORTHO05D006169 9.1e-31 139.0 473 30.9
HanXRQChr05g0130831 Helianthus annuus HOM05D005126 ORTHO05D006169 1.2e-27 128.6 387 30.2
AagrBONN_evm.TU.Sc2ySwM_368.2701 Anthoceros agrestis HOM05D005126 ORTHO05D006169 1.8e-26 124.8 368 31.0
Pp3c16_8350 Physcomitrium patens HOM05D005126 ORTHO05D006169 8.8e-26 122.5 390 29.7
CSS0026607 Camellia sinensis var. sinensis HOM05D005126 ORTHO05D006169 2.0e-25 121.3 121 57.9
Cpa.g.c45157 Carica papaya HOM05D005126 ORTHO05D006169 3.1e-23 114.0 101 63.4
SMO141G0003 Selaginella moellendorffii HOM05D005126 ORTHO05D006169 3.1e-23 114.0 544 27.2
Mapoly0032s0118 Marchantia polymorpha HOM05D005126 ORTHO05D006169 5.9e-22 109.8 319 31.3
CDE12G0914 Ceratophyllum demersum HOM05D005126 ORTHO05D006169 2.1e-19 101.3 389 29.0
TAR626G0500 Trochodendron aralioides HOM05D005126 ORTHO05D006169 1.4e-18 98.6 346 30.3
CDE12G0347 Ceratophyllum demersum HOM05D005126 ORTHO05D006169 2.2e-16 91.3 428 27.6
CBR_g52260 Chara braunii HOM05D005126 ORTHO05D006169 1.8e-15 88.2 358 28.8
BcaB04g20360 Brassica carinata HOM05D005126 ORTHO05D006169 8.6e-13 79.3 219 30.1
BcaB04g20358 Brassica carinata HOM05D005126 ORTHO05D006169 1.0e-10 72.4 277 28.2
MELO3C007345.2 Cucumis melo HOM05D005126 ORTHO05D006169 7.5e-09 66.2 240 28.8
Cpa.g.sc871.1 Carica papaya HOM05D005126 ORTHO05D006169 1.4e-07 62.0 360 28.1
HPP92_016843 Vanilla planifolia HOM05D005126 ORTHO05D006169 5.4e-07 60.1 221 27.6
FAN25G0472 Fragaria x ananassa HOM05D005126 ORTHO05D006169 2.7e-06 57.8 186 30.6
Oeu030881.1 Olea europaea HOM05D005126 ORTHO05D006169 3.5e-06 57.4 325 24.0


User provided reference genes

Program Settings