Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr10.2036 Acer truncatum HOM05D005121 ORTHO05D006115 1.2e-28 129.0 60 100.0
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 3.6e-25 117.5 60 90.0
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 8.0e-25 116.3 60 88.3
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 1.4e-24 115.5 60 88.3
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 1.8e-24 115.2 60 86.7
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 3.1e-24 114.4 60 86.7
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 3.1e-24 114.4 60 88.3
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 3.1e-24 114.4 60 86.7
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 4.0e-24 114.0 60 85.0
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 5.2e-24 113.6 60 88.3
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 5.2e-24 113.6 59 84.7
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 1.2e-23 112.5 60 85.0
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 1.2e-23 112.5 60 85.0
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 1.5e-23 112.1 60 83.3
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 1.5e-23 112.1 60 83.3
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 2.0e-23 111.7 60 83.3
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 3.4e-23 110.9 60 81.7
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 3.4e-23 110.9 60 81.7
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 3.4e-23 110.9 60 85.0
Ah.09g236300 Amaranthus hybridus HOM05D005121 ORTHO05D006115 4.4e-23 110.5 60 83.3
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 4.4e-23 110.5 60 85.0
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 4.4e-23 110.5 60 85.0
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 4.4e-23 110.5 60 81.7
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 5.8e-23 110.2 60 81.7
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 5.8e-23 110.2 60 81.7
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 5.8e-23 110.2 60 85.0
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 5.8e-23 110.2 60 81.7
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 7.5e-23 109.8 60 81.7
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 7.5e-23 109.8 60 85.0
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 7.5e-23 109.8 60 85.0
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 9.8e-23 109.4 60 83.3
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 9.8e-23 109.4 60 85.0
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 9.8e-23 109.4 58 84.5
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 1.3e-22 109.0 60 83.3
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 1.3e-22 109.0 60 83.3
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 1.3e-22 109.0 60 83.3
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 1.3e-22 109.0 60 83.3
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 1.7e-22 108.6 60 81.7
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 1.7e-22 108.6 60 80.0
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 1.7e-22 108.6 60 80.0
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 2.2e-22 108.2 60 81.7
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 2.2e-22 108.2 60 81.7
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 2.2e-22 108.2 60 81.7
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 2.9e-22 107.8 60 81.7
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 2.9e-22 107.8 60 81.7
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 2.9e-22 107.8 60 83.3
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 2.9e-22 107.8 60 80.0
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 3.7e-22 107.5 60 83.3
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 4.9e-22 107.1 60 83.3
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 4.9e-22 107.1 60 83.3
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 4.9e-22 107.1 60 81.7
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 6.4e-22 106.7 60 80.0
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 8.3e-22 106.3 60 83.3
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 8.3e-22 106.3 60 83.3
vmacro15854 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 8.3e-22 106.3 60 83.3
Actinidia11821 Actinidia chinensis HOM05D005121 ORTHO05D006115 1.1e-21 105.9 60 81.7
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 1.1e-21 105.9 60 81.7
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 1.1e-21 105.9 60 83.3
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 1.1e-21 105.9 60 81.7
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 1.4e-21 105.5 60 80.0
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 1.4e-21 105.5 60 80.0
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 1.4e-21 105.5 60 80.0
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 1.9e-21 105.1 60 83.3
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 1.9e-21 105.1 58 81.0
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.9e-21 105.1 58 81.0
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.9e-21 105.1 58 81.0
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.9e-21 105.1 58 81.0
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 1.9e-21 105.1 60 81.7
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 1.9e-21 105.1 58 82.8
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 1.9e-21 105.1 60 81.7
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 1.9e-21 105.1 60 81.7
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 2.4e-21 104.8 60 80.0
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 2.4e-21 104.8 60 81.7
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 3.2e-21 104.4 60 80.0
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 3.2e-21 104.4 60 78.3
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 4.1e-21 104.0 60 78.3
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 4.1e-21 104.0 58 79.3
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 7.0e-21 103.2 60 80.0
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 7.0e-21 103.2 60 80.0
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 7.0e-21 103.2 60 75.0
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 9.2e-21 102.8 60 80.0
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 9.2e-21 102.8 60 80.0
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 9.2e-21 102.8 60 80.0
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 9.2e-21 102.8 60 76.7
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 2.0e-20 101.7 58 77.6
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 3.5e-20 100.9 59 76.3
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 3.5e-20 100.9 55 81.8
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 4.6e-20 100.5 60 76.7
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 4.6e-20 100.5 60 78.3
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 4.6e-20 100.5 55 80.0
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 6.0e-20 100.1 55 78.2
HPP92_010075 Vanilla planifolia HOM05D005121 ORTHO05D006115 6.0e-20 100.1 60 75.0
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 7.8e-20 99.8 56 82.1
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 1.0e-19 99.4 55 78.2
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 1.3e-19 99.0 60 76.7
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 1.7e-19 98.6 55 78.2
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 1.7e-19 98.6 55 78.2
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 1.7e-19 98.6 55 78.2
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 1.7e-19 98.6 55 78.2
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 1.7e-19 98.6 55 78.2
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 3.0e-19 97.8 60 73.3
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 3.9e-19 97.4 60 73.3
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 5.0e-19 97.1 56 80.4
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 5.0e-19 97.1 60 75.0
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 1.9e-18 95.1 60 73.3
BcaB04g20349 Brassica carinata HOM05D005121 ORTHO05D006115 1.9e-18 95.1 54 75.9
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 1.9e-18 95.1 54 75.9
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 1.9e-18 95.1 54 75.9
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 1.9e-18 95.1 54 75.9
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 1.9e-18 95.1 54 75.9
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 9.5e-18 92.8 56 75.0
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 1.2e-17 92.4 55 78.2
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 2.1e-17 91.7 58 63.8
Zm00001eb396290 Zea mays HOM05D005121 ORTHO05D006115 2.1e-17 91.7 56 75.0
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 4.7e-17 90.5 58 63.8
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 4.7e-17 90.5 56 73.2
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 6.2e-17 90.1 54 72.2
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 6.2e-17 90.1 56 73.2
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 6.2e-17 90.1 56 73.2
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 6.2e-17 90.1 56 73.2
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 1.4e-16 89.0 55 70.9
Peaxi162Scf01035g00217 Petunia axillaris HOM05D005121 ORTHO05D006115 1.8e-16 88.6 54 75.9
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 4.0e-16 87.4 55 69.1
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 6.8e-16 86.7 53 66.0
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 1.5e-15 85.5 58 60.3
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 2.6e-15 84.7 55 63.6
CARHR260990 Cardamine hirsuta HOM05D005121 ORTHO05D006115 9.8e-15 82.8 55 65.5
SHI00053 Sapria himalayana HOM05D005121 ORTHO05D006115 1.7e-14 82.0 56 58.9
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 6.0e-12 73.6 55 58.2
Ah.14g088780 Amaranthus hybridus HOM05D005121 ORTHO05D006115 1.2e-09 65.9 60 58.3


User provided reference genes

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