Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr10.2014 Acer truncatum HOM05D006486 ORTHO05D007888 5.0e-141 504.6 288 100.0
Ciclev10016271m.g Citrus clementina HOM05D006486 ORTHO05D007888 3.2e-55 219.5 295 49.2
Cpa.g.sc27.128 Carica papaya HOM05D006486 ORTHO05D007888 3.6e-46 189.5 276 46.0
Prupe.4G037000 Prunus persica HOM05D006486 ORTHO05D007888 2.6e-44 183.3 309 42.1
MD10G1303500 Malus domestica HOM05D006486 ORTHO05D007888 5.7e-44 182.2 300 47.3
RcHm_v2.0_Chr5g0006301 Rosa chinensis HOM05D006486 ORTHO05D007888 5.7e-44 182.2 286 41.6
TWI63G1620 Tripterygium wilfordii HOM05D006486 ORTHO05D007888 1.1e-42 177.9 290 44.8
Thecc.06G199700 Theobroma cacao HOM05D006486 ORTHO05D007888 1.2e-41 174.5 292 44.2
GSVIVG01003184001 Vitis vinifera HOM05D006486 ORTHO05D007888 1.0e-40 171.4 273 46.2
Haze_06575 Corylus avellana HOM05D006486 ORTHO05D007888 2.2e-40 170.2 297 42.8
Haze_06576 Corylus avellana HOM05D006486 ORTHO05D007888 2.2e-40 170.2 297 42.8
Cfa000350 Carpinus fangiana HOM05D006486 ORTHO05D007888 2.9e-40 169.9 281 43.4
arahy.Tifrunner.gnm1.ann1.4FF3SU Arachis hypogaea HOM05D006486 ORTHO05D007888 5.0e-40 169.1 286 40.9
arahy.Tifrunner.gnm1.ann1.3M60GY Arachis hypogaea HOM05D006486 ORTHO05D007888 1.5e-39 167.5 286 40.6
Glyma.15G067400 Glycine max HOM05D006486 ORTHO05D007888 3.2e-39 166.4 291 42.3
Duzib235G1194 Durio zibethinus HOM05D006486 ORTHO05D007888 5.5e-39 165.6 267 44.2
COL.COLO4_31586 Corchorus olitorius HOM05D006486 ORTHO05D007888 1.2e-38 164.5 256 43.8
FAN16G2112 Fragaria x ananassa HOM05D006486 ORTHO05D007888 1.2e-38 164.5 295 41.4
MD05G1325600 Malus domestica HOM05D006486 ORTHO05D007888 2.8e-38 163.3 287 41.5
TPR.G25690 Trifolium pratense HOM05D006486 ORTHO05D007888 2.8e-38 163.3 289 40.8
Lalb_Chr20g0122301 Lupinus albus HOM05D006486 ORTHO05D007888 3.6e-38 162.9 286 42.0
Glyma.13G246500 Glycine max HOM05D006486 ORTHO05D007888 4.7e-38 162.5 285 41.1
Psat1g208760 Pisum sativum HOM05D006486 ORTHO05D007888 4.7e-38 162.5 241 44.8
QL04p018235 Quercus lobata HOM05D006486 ORTHO05D007888 8.0e-38 161.8 281 43.8
Potri.011G042600 Populus trichocarpa HOM05D006486 ORTHO05D007888 1.0e-37 161.4 293 43.0
FvH4_3g03970 Fragaria vesca HOM05D006486 ORTHO05D007888 1.4e-37 161.0 294 41.8
FAN11G1020 Fragaria x ananassa HOM05D006486 ORTHO05D007888 1.4e-37 161.0 294 41.8
Manes.17G039100 Manihot esculenta HOM05D006486 ORTHO05D007888 1.8e-37 160.6 222 48.2
Medtr2g011760 Medicago truncatula HOM05D006486 ORTHO05D007888 4.0e-37 159.5 290 39.0
FAN25G3184 Fragaria x ananassa HOM05D006486 ORTHO05D007888 6.8e-37 158.7 291 43.3
TPR.G36802 Trifolium pratense HOM05D006486 ORTHO05D007888 6.8e-37 158.7 293 39.6
TAR624G1400 Trochodendron aralioides HOM05D006486 ORTHO05D007888 6.8e-37 158.7 276 45.3
FAN21G2539 Fragaria x ananassa HOM05D006486 ORTHO05D007888 1.5e-36 157.5 303 40.9
Nn1g06762 Nelumbo nucifera HOM05D006486 ORTHO05D007888 2.0e-36 157.1 268 42.5
Manes.16G020500 Manihot esculenta HOM05D006486 ORTHO05D007888 4.4e-36 156.0 305 43.3
Ca_00252_v3 Cicer arietinum L. HOM05D006486 ORTHO05D007888 4.9e-35 152.5 294 39.1
Medtr4g091220 Medicago truncatula HOM05D006486 ORTHO05D007888 4.9e-35 152.5 297 39.1
Lj4g0025313 Lotus japonicus HOM05D006486 ORTHO05D007888 8.3e-35 151.8 284 39.8
Glyma.08G059200 Glycine max HOM05D006486 ORTHO05D007888 1.1e-34 151.4 303 38.6
Actinidia24058 Actinidia chinensis HOM05D006486 ORTHO05D007888 2.4e-34 150.2 221 43.9
CiPaw.09G157800 Carya illinoinensis HOM05D006486 ORTHO05D007888 2.4e-34 150.2 289 39.4
Potri.004G034200 Populus trichocarpa HOM05D006486 ORTHO05D007888 4.1e-34 149.4 285 41.8
Sabra11G0029300 Salix brachista HOM05D006486 ORTHO05D007888 4.1e-34 149.4 290 41.7
Cc02_g12410 Coffea canephora HOM05D006486 ORTHO05D007888 5.4e-34 149.1 272 41.5
Phvul.006G192300 Phaseolus vulgaris HOM05D006486 ORTHO05D007888 5.4e-34 149.1 285 40.4
Lj6g0020154 Lotus japonicus HOM05D006486 ORTHO05D007888 9.2e-34 148.3 281 44.1
CSS0009661 Camellia sinensis var. sinensis HOM05D006486 ORTHO05D007888 2.0e-33 147.1 268 43.3
Gohir.D10G021800 Gossypium hirsutum HOM05D006486 ORTHO05D007888 5.9e-33 145.6 297 43.4
CANSAT56G1095 Cannabis sativa HOM05D006486 ORTHO05D007888 7.8e-33 145.2 291 37.5
Rhsim02G0119500 Rhododendron simsii HOM05D006486 ORTHO05D007888 2.3e-32 143.7 299 38.1
Gorai.011G022900 Gossypium raimondii HOM05D006486 ORTHO05D007888 2.9e-32 143.3 297 43.1
SGA_v2.0_scaffold7G03946 Striga asiatica HOM05D006486 ORTHO05D007888 2.9e-32 143.3 269 40.5
VMungo0540G0810 Vigna mungo HOM05D006486 ORTHO05D007888 3.8e-32 142.9 294 38.8
TAR629G2100 Trochodendron aralioides HOM05D006486 ORTHO05D007888 5.0e-32 142.5 268 39.9
THA.LOC104812719 Tarenaya hassleriana HOM05D006486 ORTHO05D007888 6.6e-32 142.1 247 39.3
Gohir.A10G021000 Gossypium hirsutum HOM05D006486 ORTHO05D007888 1.1e-31 141.4 284 41.9
Aqoxy1G03879 Aquilegia oxysepala HOM05D006486 ORTHO05D007888 6.1e-30 135.6 267 39.3
MSTRG.7289 Avicennia marina HOM05D006486 ORTHO05D007888 8.0e-30 135.2 259 38.2
PGSC0003DMG400022406 Solanum tuberosum HOM05D006486 ORTHO05D007888 8.0e-30 135.2 294 35.7
Solyc02g079160.2 Solanum lycopersicum HOM05D006486 ORTHO05D007888 1.0e-29 134.8 298 37.2
Oeu059548.1 Olea europaea HOM05D006486 ORTHO05D007888 2.3e-29 133.7 235 40.4
Lj1P1213T18 Lonicera japonica HOM05D006486 ORTHO05D007888 3.0e-29 133.3 166 48.8
Actinidia11810 Actinidia chinensis HOM05D006486 ORTHO05D007888 1.2e-28 131.3 225 40.0
Sed0019218 Sechium edule HOM05D006486 ORTHO05D007888 2.0e-28 130.6 264 37.5
Sabra04G0019900 Salix brachista HOM05D006486 ORTHO05D007888 4.4e-28 129.4 273 41.0
PGR004G0715 Punica granatum HOM05D006486 ORTHO05D007888 9.8e-28 128.3 263 39.5
Oeu014709.1 Olea europaea HOM05D006486 ORTHO05D007888 3.7e-27 126.3 221 41.2
Sopen02g023960 Solanum pennellii HOM05D006486 ORTHO05D007888 8.3e-27 125.2 295 35.9
Nn1g03891 Nelumbo nucifera HOM05D006486 ORTHO05D007888 1.1e-26 124.8 272 37.5
Nitab4.5_0006573g0010 Nicotiana tabacum HOM05D006486 ORTHO05D007888 7.0e-26 122.1 308 34.4
Nitab4.5_0000190g0060 Nicotiana tabacum HOM05D006486 ORTHO05D007888 9.2e-26 121.7 309 34.6
Carub.0007s1992 Capsella rubella HOM05D006486 ORTHO05D007888 1.2e-25 121.3 255 40.4
Psat7g109320 Pisum sativum HOM05D006486 ORTHO05D007888 1.2e-25 121.3 267 38.2
Migut.M01215 Erythranthe guttata HOM05D006486 ORTHO05D007888 2.0e-25 120.6 255 38.4
VMungo0251G3177 Vigna mungo HOM05D006486 ORTHO05D007888 1.0e-24 118.2 297 34.3
Nitab4.5_0002222g0020 Nicotiana tabacum HOM05D006486 ORTHO05D007888 1.3e-24 117.9 293 34.1
AL7G32570 Arabidopsis lyrata HOM05D006486 ORTHO05D007888 3.0e-24 116.7 258 37.2
ClCG01G022550 Citrullus lanatus HOM05D006486 ORTHO05D007888 1.5e-23 114.4 257 35.8
HanXRQChr16g0517421 Helianthus annuus HOM05D006486 ORTHO05D007888 2.5e-23 113.6 307 34.9
MSTRG.15936 Avicennia marina HOM05D006486 ORTHO05D007888 3.3e-23 113.2 258 36.0
Peaxi162Scf00083g00023 Petunia axillaris HOM05D006486 ORTHO05D007888 3.3e-23 113.2 216 41.7
HanXRQChr08g0224091 Helianthus annuus HOM05D006486 ORTHO05D007888 5.6e-23 112.5 351 32.2
Aa31LG6G3500 Aethionema arabicum HOM05D006486 ORTHO05D007888 4.7e-22 109.4 284 34.5
Ca_18481_v3 Cicer arietinum L. HOM05D006486 ORTHO05D007888 8.0e-22 108.6 280 33.2
Phvul.002G221700 Phaseolus vulgaris HOM05D006486 ORTHO05D007888 1.0e-21 108.2 296 34.8
AT4G21500 Arabidopsis thaliana HOM05D006486 ORTHO05D007888 1.4e-21 107.8 262 38.2
Thhalv10026096m.g Eutrema salsugineum HOM05D006486 ORTHO05D007888 2.6e-20 103.6 287 36.9
BcaNung02794 Brassica carinata HOM05D006486 ORTHO05D007888 5.8e-20 102.4 260 37.3
SalBow8G4438 Salvia bowleyana HOM05D006486 ORTHO05D007888 9.8e-20 101.7 159 41.5
BolC1t01497H Brassica oleracea HOM05D006486 ORTHO05D007888 1.3e-19 101.3 265 38.1
Lsat_1_v5_gn_4_56921 Lactuca sativa HOM05D006486 ORTHO05D007888 1.7e-19 100.9 147 49.0
C01p15430 Brassica napus HOM05D006486 ORTHO05D007888 4.9e-19 99.4 265 38.5
ECA234G0536 Erigeron canadensis HOM05D006486 ORTHO05D007888 8.3e-19 98.6 152 38.8
CARHR228160 Cardamine hirsuta HOM05D006486 ORTHO05D007888 1.1e-18 98.2 261 35.6
Oeu030052.1 Olea europaea HOM05D006486 ORTHO05D007888 1.1e-18 98.2 217 35.0
A01p12810 Brassica napus HOM05D006486 ORTHO05D007888 1.9e-18 97.4 267 35.2
Gohir.D09G070600 Gossypium hirsutum HOM05D006486 ORTHO05D007888 3.2e-18 96.7 259 35.5
Gorai.006G085300 Gossypium raimondii HOM05D006486 ORTHO05D007888 3.2e-18 96.7 259 35.5
PSO210G7027 Papaver somniferum HOM05D006486 ORTHO05D007888 3.2e-18 96.7 287 32.1
Oeu043421.1 Olea europaea HOM05D006486 ORTHO05D007888 5.4e-18 95.9 283 30.4
CsaV3_6G049740 Cucumis sativus L. HOM05D006486 ORTHO05D007888 7.0e-18 95.5 264 40.2
Sp7g19620 Schrenkiella parvula HOM05D006486 ORTHO05D007888 9.2e-18 95.1 227 41.4
PSO832G0007 Papaver somniferum HOM05D006486 ORTHO05D007888 2.0e-17 94.0 287 31.7
CDE05G2620 Ceratophyllum demersum HOM05D006486 ORTHO05D007888 1.3e-16 91.3 277 32.9
Gohir.D06G211933 Gossypium hirsutum HOM05D006486 ORTHO05D007888 3.0e-16 90.1 292 33.9
MELO3C007322.2 Cucumis melo HOM05D006486 ORTHO05D007888 8.6e-16 88.6 266 34.6
Gorai.010G254200 Gossypium raimondii HOM05D006486 ORTHO05D007888 8.6e-16 88.6 292 33.9
Sed0006081 Sechium edule HOM05D006486 ORTHO05D007888 1.9e-15 87.4 381 27.0
EL10Ac8g20532 Beta vulgaris HOM05D006486 ORTHO05D007888 3.3e-15 86.7 316 32.3
CDE05G2026 Ceratophyllum demersum HOM05D006486 ORTHO05D007888 2.1e-14 84.0 148 40.5
DCAR_004139 Daucus carota HOM05D006486 ORTHO05D007888 4.7e-14 82.8 223 33.6
BraA01t01225Z Brassica rapa HOM05D006486 ORTHO05D007888 1.8e-13 80.9 269 32.7
Sc24g0000710 Simmondsia chinensis HOM05D006486 ORTHO05D007888 9.8e-12 75.1 114 44.7
Oeu051330.1 Olea europaea HOM05D006486 ORTHO05D007888 1.7e-11 74.3 104 40.4
MBI02_g06002_MAGBIO Magnolia biondii HOM05D007621 ORTHO05D009631 2.2e-11 73.9 232 31.9
ATR0693G170 Amborella trichopoda HOM05D006486 ORTHO05D007888 3.9e-08 63.2 168 35.7
HPP92_012357 Vanilla planifolia HOM05D006486 ORTHO05D007888 1.6e-06 57.8 218 32.6
Nitab4.5_0001007g0050 Nicotiana tabacum HOM05D006486 ORTHO05D007888 2.1e-06 57.4 191 29.8
Ah.09g236140 Amaranthus hybridus HOM05D006486 ORTHO05D007888 8.1e-06 55.5 156 31.4


User provided reference genes

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