Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr10.2011 Acer truncatum HOM05D007621 ORTHO05D009631 1.0e-37 159.5 74 100.0
Actinidia11809 Actinidia chinensis HOM05D007621 ORTHO05D009631 1.6e-19 99.0 81 61.7
Ciclev10014484m.g Citrus clementina HOM05D007621 ORTHO05D009631 2.4e-18 95.1 98 54.1
RcHm_v2.0_Chr5g0006311 Rosa chinensis HOM05D007621 ORTHO05D009631 3.1e-18 94.7 80 57.5
Rhsim02G0119600 Rhododendron simsii HOM05D007621 ORTHO05D009631 5.3e-18 94.0 94 52.1
Dinv40478 Davidia involucrata HOM05D007621 ORTHO05D009631 1.2e-17 92.8 92 54.3
Manes.16G020600 Manihot esculenta HOM05D007621 ORTHO05D009631 4.5e-17 90.9 97 48.5
Cc02_g12430 Coffea canephora HOM05D007621 ORTHO05D009631 7.6e-17 90.1 50 74.0
SGA_v2.0_scaffold49G18280 Striga asiatica HOM05D007621 ORTHO05D009631 7.6e-17 90.1 81 58.0
TWI38G0795 Tripterygium wilfordii HOM05D007621 ORTHO05D009631 7.6e-17 90.1 96 51.0
FAN16G2797 Fragaria x ananassa HOM05D007621 ORTHO05D009631 9.9e-17 89.7 83 53.0
Cfa000351 Carpinus fangiana HOM05D007621 ORTHO05D009631 1.3e-16 89.4 90 55.6
Hma1.2p1_1182F.1_g264810 Hydrangea macrophylla HOM05D007621 ORTHO05D009631 1.7e-16 89.0 87 51.7
CSS0049226 Camellia sinensis var. sinensis HOM05D007621 ORTHO05D009631 2.2e-16 88.6 94 52.1
FvH4_3g03980 Fragaria vesca HOM05D007621 ORTHO05D009631 2.2e-16 88.6 83 50.6
HPP92_005890 Vanilla planifolia HOM05D007621 ORTHO05D009631 2.2e-16 88.6 49 75.5
FAN11G2677 Fragaria x ananassa HOM05D007621 ORTHO05D009631 2.9e-16 88.2 51 68.6
GSVIVG01003190001 Vitis vinifera HOM05D007621 ORTHO05D009631 2.9e-16 88.2 91 53.8
Haze_06574 Corylus avellana HOM05D007621 ORTHO05D009631 6.4e-16 87.0 92 53.3
Lj1C1213T4 Lonicera japonica HOM05D007621 ORTHO05D009631 1.1e-15 86.3 94 51.1
PGR042G3240 Punica granatum HOM05D007621 ORTHO05D009631 1.4e-15 85.9 90 47.8
TAR624G0533 Trochodendron aralioides HOM05D007621 ORTHO05D009631 1.4e-15 85.9 91 51.6
ClCG03G005520 Citrullus lanatus HOM05D007621 ORTHO05D009631 2.4e-15 85.1 92 51.1
HanXRQChr11g0338441 Helianthus annuus HOM05D007621 ORTHO05D009631 2.4e-15 85.1 49 73.5
MBI02_g06002_MAGBIO Magnolia biondii HOM05D007621 ORTHO05D009631 4.2e-15 84.3 51 66.7
PGR042G2283 Punica granatum HOM05D007621 ORTHO05D009631 4.2e-15 84.3 90 48.9
CsaV3_1G011790 Cucumis sativus L. HOM05D007621 ORTHO05D009631 9.3e-15 83.2 89 48.3
SEGI_29793 Sequoiadendron giganteum HOM05D007621 ORTHO05D009631 9.3e-15 83.2 49 67.3
Sed0011037 Sechium edule HOM05D007621 ORTHO05D009631 1.2e-14 82.8 49 69.4
MSTRG.14678 Avicennia marina HOM05D007621 ORTHO05D009631 1.6e-14 82.4 92 47.8
arahy.Tifrunner.gnm1.ann1.M1GH8V Arachis hypogaea HOM05D007621 ORTHO05D009631 2.1e-14 82.0 85 49.4
arahy.Tifrunner.gnm1.ann1.14L1JV Arachis hypogaea HOM05D007621 ORTHO05D009631 2.7e-14 81.6 85 49.4
MELO3C002556.2 Cucumis melo HOM05D007621 ORTHO05D009631 2.7e-14 81.6 89 47.2
Solyc02g079140.2 Solanum lycopersicum HOM05D007621 ORTHO05D009631 3.5e-14 81.3 49 67.3
Sopen02g023940 Solanum pennellii HOM05D007621 ORTHO05D009631 3.5e-14 81.3 49 67.3
CDE12G0841 Ceratophyllum demersum HOM05D007621 ORTHO05D009631 4.6e-14 80.9 49 71.4
Lsat_1_v5_gn_1_126820 Lactuca sativa HOM05D007621 ORTHO05D009631 4.6e-14 80.9 50 68.0
SalBow7G0238 Salvia bowleyana HOM05D007621 ORTHO05D009631 4.6e-14 80.9 49 65.3
SalBow7G3398 Salvia bowleyana HOM05D007621 ORTHO05D009631 4.6e-14 80.9 49 65.3
VMungo0540G1980 Vigna mungo HOM05D007621 ORTHO05D009631 4.6e-14 80.9 70 54.3
ATR0693G363 Amborella trichopoda HOM05D007621 ORTHO05D009631 1.0e-13 79.7 74 50.0
CDE01G0148 Ceratophyllum demersum HOM05D007621 ORTHO05D009631 1.0e-13 79.7 91 51.6
CDE01G0329 Ceratophyllum demersum HOM05D007621 ORTHO05D009631 1.0e-13 79.7 91 51.6
Sc14g0001480 Simmondsia chinensis HOM05D007621 ORTHO05D009631 1.8e-13 79.0 90 44.4
Prupe.4G036900 Prunus persica HOM05D007621 ORTHO05D009631 2.3e-13 78.6 49 69.4
ECA248G3190 Erigeron canadensis HOM05D007621 ORTHO05D009631 3.0e-13 78.2 49 69.4
Nitab4.5_0006573g0020 Nicotiana tabacum HOM05D007621 ORTHO05D009631 5.1e-13 77.4 47 66.0
Phvul.006G192200 Phaseolus vulgaris HOM05D007621 ORTHO05D009631 5.1e-13 77.4 91 50.5
Eucgr.E03798 Eucalyptus grandis HOM05D007621 ORTHO05D009631 6.7e-13 77.0 48 62.5
Peaxi162Scf00083g00022 Petunia axillaris HOM05D007621 ORTHO05D009631 8.7e-13 76.6 45 68.9
Lj6g0025549 Lotus japonicus HOM05D007621 ORTHO05D009631 1.1e-12 76.3 60 51.7
Os04g0636000 Oryza sativa ssp. japonica HOM05D007621 ORTHO05D009631 1.1e-12 76.3 63 55.6
Glyma.15G067500 Glycine max HOM05D007621 ORTHO05D009631 1.9e-12 75.5 49 65.3
Nitab4.5_0000190g0070 Nicotiana tabacum HOM05D007621 ORTHO05D009631 1.9e-12 75.5 45 66.7
MD05G1325500 Malus domestica HOM05D007621 ORTHO05D009631 2.5e-12 75.1 52 63.5
CAN.G424.15 Capsicum annuum HOM05D007621 ORTHO05D009631 3.3e-12 74.7 44 68.2
Zm00001eb069260 Zea mays HOM05D007621 ORTHO05D009631 4.3e-12 74.3 50 62.0
AUR62014718 Chenopodium quinoa HOM05D007621 ORTHO05D009631 5.6e-12 73.9 83 49.4
AUR62016897 Chenopodium quinoa HOM05D007621 ORTHO05D009631 9.6e-12 73.2 83 49.4
QL04p018250 Quercus lobata HOM05D007621 ORTHO05D009631 9.6e-12 73.2 45 68.9
Ca_00253_v3 Cicer arietinum L. HOM05D007621 ORTHO05D009631 1.3e-11 72.8 67 49.3
Mapoly0104s0019 Marchantia polymorpha HOM05D007621 ORTHO05D009631 2.1e-11 72.0 83 44.6
Psat1g208720 Pisum sativum HOM05D007621 ORTHO05D009631 3.7e-11 71.2 68 45.6
EL10Ac8g20530 Beta vulgaris HOM05D007621 ORTHO05D009631 6.2e-11 70.5 49 61.2
Nn1g03894 Nelumbo nucifera HOM05D007621 ORTHO05D009631 1.1e-10 69.7 45 64.4
PGSC0003DMG400022357 Solanum tuberosum HOM05D007621 ORTHO05D009631 1.1e-10 69.7 44 63.6
Thecc.06G199600 Theobroma cacao HOM05D007621 ORTHO05D009631 1.0e-08 63.2 45 68.9
TPR.G36840 Trifolium pratense HOM05D007621 ORTHO05D009631 1.0e-08 63.2 46 58.7
CBR_g725 Chara braunii HOM05D007621 ORTHO05D009631 4.9e-08 60.8 48 56.2


User provided reference genes

Program Settings