Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr10.196 Acer truncatum HOM05D004308 ORTHO05D005139 5.3e-128 461.1 238 100.0
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 1.3e-17 94.4 54 88.9
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 4.6e-15 85.9 54 75.9
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 1.3e-14 84.3 54 74.1
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 1.8e-14 84.0 54 74.1
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 3.0e-14 83.2 54 75.9
TAR623G1609 Trochodendron aralioides HOM05D004308 ORTHO05D005139 3.0e-14 83.2 54 72.2
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 3.9e-14 82.8 54 72.2
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 5.1e-14 82.4 54 68.5
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 5.1e-14 82.4 78 55.1
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 6.7e-14 82.0 54 72.2
Sc09g0000260 Simmondsia chinensis HOM05D004308 ORTHO05D005139 6.7e-14 82.0 54 70.4
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 8.7e-14 81.6 54 70.4
Gohir.D10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 1.5e-13 80.9 54 72.2
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 1.9e-13 80.5 54 72.2
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 2.5e-13 80.1 73 57.5
COL.COLO4_34992 Corchorus olitorius HOM05D004308 ORTHO05D005139 2.5e-13 80.1 54 72.2
MD14G1141900 Malus domestica HOM05D004308 ORTHO05D005139 2.5e-13 80.1 54 72.2
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 3.3e-13 79.7 54 66.7
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 3.3e-13 79.7 54 70.4
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 5.6e-13 79.0 54 68.5
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 5.6e-13 79.0 54 68.5
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 5.6e-13 79.0 54 68.5
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 5.6e-13 79.0 54 68.5
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 5.6e-13 79.0 54 70.4
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 5.6e-13 79.0 132 42.4
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 7.4e-13 78.6 54 68.5
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 7.4e-13 78.6 54 70.4
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 7.4e-13 78.6 54 70.4
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 7.4e-13 78.6 54 68.5
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 7.4e-13 78.6 54 68.5
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 9.6e-13 78.2 54 72.2
Hma1.2p1_0972F.1_g242796 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 9.6e-13 78.2 54 68.5
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 9.6e-13 78.2 54 68.5
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 9.6e-13 78.2 54 68.5
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 1.3e-12 77.8 73 56.2
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 1.3e-12 77.8 55 65.5
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 1.3e-12 77.8 83 53.0
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 1.3e-12 77.8 55 65.5
CARHR012200 Cardamine hirsuta HOM05D004308 ORTHO05D005139 1.3e-12 77.8 83 53.0
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 1.3e-12 77.8 54 68.5
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 1.3e-12 77.8 54 68.5
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 1.3e-12 77.8 54 68.5
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 1.6e-12 77.4 54 64.8
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 1.6e-12 77.4 54 68.5
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 1.6e-12 77.4 54 66.7
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 2.1e-12 77.0 83 51.8
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 2.8e-12 76.6 77 51.9
MD03G1008200 Malus domestica HOM05D004308 ORTHO05D005139 2.8e-12 76.6 54 68.5
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 3.7e-12 76.3 83 51.8
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 4.8e-12 75.9 54 59.3
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 4.8e-12 75.9 54 59.3
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 4.8e-12 75.9 54 64.8
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 6.2e-12 75.5 83 51.8
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 6.2e-12 75.5 83 51.8
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 6.2e-12 75.5 54 68.5
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 6.2e-12 75.5 54 66.7
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 6.2e-12 75.5 54 64.8
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 8.1e-12 75.1 83 49.4
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 8.1e-12 75.1 57 63.2
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 8.1e-12 75.1 83 50.6
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 1.1e-11 74.7 54 64.8
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 1.1e-11 74.7 54 64.8
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 1.4e-11 74.3 62 61.3
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 1.4e-11 74.3 73 52.1
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 1.4e-11 74.3 71 54.9
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 1.4e-11 74.3 54 63.0
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 1.8e-11 73.9 54 64.8
Zm00001eb118570 Zea mays HOM05D004308 ORTHO05D005139 1.8e-11 73.9 77 53.2
Zm00001eb162820 Zea mays HOM05D004308 ORTHO05D005139 1.8e-11 73.9 77 53.2
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 2.4e-11 73.6 83 50.6
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 2.4e-11 73.6 83 50.6
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 2.4e-11 73.6 54 64.8
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 2.4e-11 73.6 54 64.8
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 2.4e-11 73.6 54 64.8
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 3.1e-11 73.2 54 63.0
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 3.1e-11 73.2 68 55.9
CANSAT78G0795 Cannabis sativa HOM05D004308 ORTHO05D005139 4.0e-11 72.8 54 64.8
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 4.0e-11 72.8 54 61.1
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 4.0e-11 72.8 54 61.1
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 4.0e-11 72.8 54 59.3
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 4.0e-11 72.8 54 61.1
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 5.3e-11 72.4 54 63.0
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 6.9e-11 72.0 54 59.3
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 9.0e-11 71.6 83 49.4
CiPaw.13G173700 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.2e-10 71.2 51 60.8
DCAR_001389 Daucus carota HOM05D004308 ORTHO05D005139 1.2e-10 71.2 54 61.1
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 1.5e-10 70.9 54 63.0
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 2.6e-10 70.1 54 63.0
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 2.6e-10 70.1 54 63.0
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 3.4e-10 69.7 54 57.4
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 3.4e-10 69.7 76 47.4
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 5.8e-10 68.9 54 57.4
Os12g0498700 Oryza sativa ssp. japonica HOM05D004308 ORTHO05D005139 7.6e-10 68.6 125 38.4
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 7.6e-10 68.6 76 47.4
CiPaw.13G173800 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.0e-09 68.2 54 53.7
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 1.3e-09 67.8 54 55.6
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 1.3e-09 67.8 51 56.9
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 1.7e-09 67.4 54 59.3
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 1.7e-09 67.4 132 35.6
CiPaw.04G144200 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.2e-09 67.0 51 56.9
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 2.2e-09 67.0 54 57.4
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 2.9e-09 66.6 62 56.5
ATR0598G220 Amborella trichopoda HOM05D004308 ORTHO05D005139 3.8e-09 66.2 54 59.3
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 8.4e-09 65.1 54 55.6
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 1.1e-08 64.7 54 57.4
SEGI_23646 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 7.1e-08 62.0 54 51.9
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 9.3e-08 61.6 54 63.0
SMO203G0184 Selaginella moellendorffii HOM05D004308 ORTHO05D005139 2.1e-07 60.5 53 52.8
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 2.3e-06 57.0 53 49.1
Atru.chr10.219 Acer truncatum HOM05D004308 ORTHO05D005139 5.1e-06 55.8 51 62.7
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 6.7e-06 55.5 32 78.1
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 6.7e-06 55.5 53 47.2


User provided reference genes

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