Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr10.1871 Acer truncatum HOM05D000084 ORTHO05D052428 1.9e-83 312.4 149 100.0
Ciclev10008533m.g Citrus clementina HOM05D000084 ORTHO05D004328 3.2e-14 82.4 169 36.7
Duzib068G1312 Durio zibethinus HOM05D000084 ORTHO05D004328 5.1e-12 75.1 99 50.5
VMungo0251G1657 Vigna mungo HOM05D000084 ORTHO05D004328 5.1e-12 75.1 158 36.1
Glyma.08G050900 Glycine max HOM05D000084 ORTHO05D004328 8.7e-12 74.3 169 36.1
Gohir.D09G171600 Gossypium hirsutum HOM05D000084 ORTHO05D004328 1.1e-11 73.9 155 35.5
Gorai.006G193300 Gossypium raimondii HOM05D000084 ORTHO05D004328 1.1e-11 73.9 155 35.5
Atru.chr9.941 Acer truncatum HOM05D000084 ORTHO05D004328 1.5e-11 73.6 158 36.7
Gohir.A09G174500 Gossypium hirsutum HOM05D000084 ORTHO05D004328 1.5e-11 73.6 155 35.5
Lj1g0000744 Lotus japonicus HOM05D000084 ORTHO05D004328 1.9e-11 73.2 169 34.3
Gorai.006G057400 Gossypium raimondii HOM05D000084 ORTHO05D004328 2.5e-11 72.8 155 34.2
Thecc.03G046800 Theobroma cacao HOM05D000084 ORTHO05D004328 2.5e-11 72.8 155 34.2
Glyma.05G243000 Glycine max HOM05D000084 ORTHO05D004328 3.3e-11 72.4 169 33.7
Gohir.A09G051100 Gossypium hirsutum HOM05D000084 ORTHO05D004328 3.3e-11 72.4 155 34.2
COL.COLO4_35353 Corchorus olitorius HOM05D000084 ORTHO05D004328 4.3e-11 72.0 155 35.5
Gohir.D09G052200 Gossypium hirsutum HOM05D000084 ORTHO05D004328 4.3e-11 72.0 155 34.2
Lj2g0012258 Lotus japonicus HOM05D000084 ORTHO05D004328 4.3e-11 72.0 169 33.7
MD06G1222900 Malus domestica HOM05D000084 ORTHO05D004328 5.6e-11 71.6 169 34.3
Cfa000697 Carpinus fangiana HOM05D000084 ORTHO05D004328 7.4e-11 71.2 157 35.7
Duzib205G0745 Durio zibethinus HOM05D000084 ORTHO05D004328 7.4e-11 71.2 155 34.8
MD14G1232000 Malus domestica HOM05D000084 ORTHO05D004328 7.4e-11 71.2 169 34.3
Atru.chr5.2904 Acer truncatum HOM05D000084 ORTHO05D004328 9.6e-11 70.9 47 74.5
Haze_06092 Corylus avellana HOM05D000084 ORTHO05D004328 1.3e-10 70.5 157 35.7
arahy.Tifrunner.gnm1.ann1.S5Z9V6 Arachis hypogaea HOM05D000084 ORTHO05D004328 2.1e-10 69.7 169 33.7
MSTRG.9283 Avicennia marina HOM05D000084 ORTHO05D004328 2.1e-10 69.7 174 33.3
Cpa.g.sc3.443 Carica papaya HOM05D000084 ORTHO05D004328 2.1e-10 69.7 157 33.8
CiPaw.09G075800 Carya illinoinensis HOM05D000084 ORTHO05D004328 2.1e-10 69.7 157 35.0
Psat1g031400 Pisum sativum HOM05D000084 ORTHO05D004328 2.8e-10 69.3 169 33.7
Sabra12G0035800 Salix brachista HOM05D000084 ORTHO05D004328 2.8e-10 69.3 42 83.3
Lalb_Chr22g0353311 Lupinus albus HOM05D000084 ORTHO05D004328 3.7e-10 68.9 169 33.1
Lalb_Chr24g0398001 Lupinus albus HOM05D000084 ORTHO05D004328 3.7e-10 68.9 169 33.1
Medtr6g080470 Medicago truncatula HOM05D000084 ORTHO05D004328 3.7e-10 68.9 169 33.7
TWI60G0025 Tripterygium wilfordii HOM05D000084 ORTHO05D004328 4.8e-10 68.6 160 35.0
arahy.Tifrunner.gnm1.ann1.IV9MYI Arachis hypogaea HOM05D000084 ORTHO05D004328 6.2e-10 68.2 169 33.1
Manes.06G009200 Manihot esculenta HOM05D000084 ORTHO05D004328 6.2e-10 68.2 160 34.4
RcHm_v2.0_Chr7g0179111 Rosa chinensis HOM05D000084 ORTHO05D004328 6.2e-10 68.2 172 34.3
DCAR_011379 Daucus carota HOM05D000084 ORTHO05D004328 8.1e-10 67.8 169 33.7
Potri.012G052100 Populus trichocarpa HOM05D000084 ORTHO05D004328 8.1e-10 67.8 47 74.5
Potri.014G079100 Populus trichocarpa HOM05D000084 ORTHO05D004328 8.1e-10 67.8 47 74.5
Sabra14G0057300 Salix brachista HOM05D000084 ORTHO05D004328 8.1e-10 67.8 47 74.5
CiPaw.10G063700 Carya illinoinensis HOM05D000084 ORTHO05D004328 1.1e-09 67.4 157 34.4
FAN08G0286 Fragaria x ananassa HOM05D000084 ORTHO05D004328 1.1e-09 67.4 159 35.2
Prupe.5G227900 Prunus persica HOM05D000084 ORTHO05D004328 1.1e-09 67.4 172 33.7
TWI15G1070 Tripterygium wilfordii HOM05D000084 ORTHO05D004328 1.1e-09 67.4 160 35.0
Ca_25306_v3 Cicer arietinum L. HOM05D000084 ORTHO05D004328 1.8e-09 66.6 169 33.1
FvH4_5g16910 Fragaria vesca HOM05D000084 ORTHO05D004328 1.8e-09 66.6 172 33.7
FAN13G2150 Fragaria x ananassa HOM05D000084 ORTHO05D004328 1.8e-09 66.6 172 33.7
FAN18G1645 Fragaria x ananassa HOM05D000084 ORTHO05D004328 1.8e-09 66.6 160 35.0
FAN04G2301 Fragaria x ananassa HOM05D000084 ORTHO05D004328 2.4e-09 66.2 172 33.7
AT1G73690 Arabidopsis thaliana HOM05D000084 ORTHO05D004328 3.1e-09 65.9 47 72.3
Dinv13553 Davidia involucrata HOM05D000084 ORTHO05D004328 3.1e-09 65.9 162 34.0
Lalb_Chr14g0370801 Lupinus albus HOM05D000084 ORTHO05D004328 3.1e-09 65.9 158 33.5
SalBow5G4682 Salvia bowleyana HOM05D000084 ORTHO05D004328 3.1e-09 65.9 174 32.8
arahy.Tifrunner.gnm1.ann1.PC8ILL Arachis hypogaea HOM05D000084 ORTHO05D004328 4.0e-09 65.5 169 33.1
arahy.Tifrunner.gnm1.ann1.QB4P8A Arachis hypogaea HOM05D000084 ORTHO05D004328 4.0e-09 65.5 169 33.1
Phvul.002G326800 Phaseolus vulgaris HOM05D000084 ORTHO05D004328 5.3e-09 65.1 55 63.6
TAR629G0907 Trochodendron aralioides HOM05D000084 ORTHO05D004328 5.3e-09 65.1 49 67.3
A08p30590 Brassica napus HOM05D000084 ORTHO05D004328 6.9e-09 64.7 47 72.3
BraA08t34990Z Brassica rapa HOM05D000084 ORTHO05D004328 6.9e-09 64.7 47 72.3
CARHR018630 Cardamine hirsuta HOM05D000084 ORTHO05D004328 6.9e-09 64.7 47 72.3
Thhalv10007847m.g Eutrema salsugineum HOM05D000084 ORTHO05D004328 6.9e-09 64.7 47 72.3
Thhalv10018665m.g Eutrema salsugineum HOM05D000084 ORTHO05D004328 6.9e-09 64.7 47 72.3
BcaC07g41347 Brassica carinata HOM05D000084 ORTHO05D004328 9.0e-09 64.3 47 70.2
A09p60120 Brassica napus HOM05D000084 ORTHO05D004328 9.0e-09 64.3 47 70.2
C08p43560 Brassica napus HOM05D000084 ORTHO05D004328 9.0e-09 64.3 47 70.2
BolC8t49466H Brassica oleracea HOM05D000084 ORTHO05D004328 9.0e-09 64.3 47 70.2
BolC8t51902H Brassica oleracea HOM05D000084 ORTHO05D004328 9.0e-09 64.3 47 70.2
Dinv10413 Davidia involucrata HOM05D000084 ORTHO05D004328 9.0e-09 64.3 59 61.0
Oeu031798.1 Olea europaea HOM05D000084 ORTHO05D004328 9.0e-09 64.3 59 61.0
Phvul.004G152000 Phaseolus vulgaris HOM05D000084 ORTHO05D004328 9.0e-09 64.3 169 33.1
Sp1g16070 Schrenkiella parvula HOM05D000084 ORTHO05D004328 9.0e-09 64.3 47 70.2
ATR0706G221 Amborella trichopoda HOM05D000084 ORTHO05D004328 1.2e-08 63.9 47 70.2
Migut.I00408 Erythranthe guttata HOM05D000084 ORTHO05D004328 1.2e-08 63.9 174 31.6
PGR044G2468 Punica granatum HOM05D000084 ORTHO05D004328 1.2e-08 63.9 54 64.8
HPP92_015722 Vanilla planifolia HOM05D000084 ORTHO05D004328 1.2e-08 63.9 47 70.2
HPP92_026638 Vanilla planifolia HOM05D000084 ORTHO05D004328 1.2e-08 63.9 47 70.2
BraA09t41381Z Brassica rapa HOM05D000084 ORTHO05D004328 1.5e-08 63.5 47 70.2
Carub.0001s1772 Capsella rubella HOM05D000084 ORTHO05D004328 1.5e-08 63.5 47 70.2
CAN.G532.3 Capsicum annuum HOM05D000084 ORTHO05D004328 1.5e-08 63.5 174 32.8
CBR_g37868 Chara braunii HOM05D000084 ORTHO05D004328 1.5e-08 63.5 95 40.0
Hma1.2p1_2154F.1_g315320 Hydrangea macrophylla HOM05D000084 ORTHO05D004328 1.5e-08 63.5 174 32.8
SMO143G0289 Selaginella moellendorffii HOM05D000084 ORTHO05D004328 1.5e-08 63.5 47 66.0
TAR371G0684 Trochodendron aralioides HOM05D000084 ORTHO05D004328 1.5e-08 63.5 47 70.2
AL1G30390 Arabidopsis lyrata HOM05D000084 ORTHO05D004328 2.0e-08 63.2 47 70.2
AL2G33490 Arabidopsis lyrata HOM05D000084 ORTHO05D004328 2.0e-08 63.2 47 70.2
AL6G46400 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 2.0e-08 63.2 47 70.2
BraA07t30985Z Brassica rapa HOM05D000084 ORTHO05D004328 2.0e-08 63.2 47 68.1
Carub.0002s2044 Capsella rubella HOM05D000084 ORTHO05D004328 2.0e-08 63.2 47 70.2
ECA247G0024 Erigeron canadensis HOM05D000084 ORTHO05D004328 2.0e-08 63.2 47 70.2
Thhalv10018801m.g Eutrema salsugineum HOM05D000084 ORTHO05D004328 2.0e-08 63.2 47 68.1
HanXRQChr10g0286451 Helianthus annuus HOM05D000084 ORTHO05D004328 2.0e-08 63.2 59 59.3
HanXRQChr15g0464491 Helianthus annuus HOM05D000084 ORTHO05D004328 2.0e-08 63.2 59 59.3
Lsat_1_v5_gn_4_128021 Lactuca sativa HOM05D000084 ORTHO05D004328 2.0e-08 63.2 59 59.3
Sp5g28870 Schrenkiella parvula HOM05D000084 ORTHO05D004328 2.0e-08 63.2 47 70.2
Aa31LG1G25570 Aethionema arabicum HOM05D000084 ORTHO05D004328 2.6e-08 62.8 47 70.2
C08p18320 Brassica napus HOM05D000084 ORTHO05D004328 2.6e-08 62.8 47 68.1
Cc04_g06700 Coffea canephora HOM05D000084 ORTHO05D004328 2.6e-08 62.8 172 32.0
Eucgr.K02247 Eucalyptus grandis HOM05D000084 ORTHO05D004328 2.6e-08 62.8 172 33.1
Mapoly0063s0076 Marchantia polymorpha HOM05D000084 ORTHO05D004328 2.6e-08 62.8 59 55.9
Nitab4.5_0001522g0110 Nicotiana tabacum HOM05D000084 ORTHO05D004328 2.6e-08 62.8 59 59.3
Nitab4.5_0004114g0040 Nicotiana tabacum HOM05D000084 ORTHO05D004328 2.6e-08 62.8 59 59.3
Oeu061231.1 Olea europaea HOM05D000084 ORTHO05D004328 2.6e-08 62.8 59 59.3
Peaxi162Scf00074g02034 Petunia axillaris HOM05D000084 ORTHO05D004328 2.6e-08 62.8 59 59.3
Solyc08g081280.3 Solanum lycopersicum HOM05D000084 ORTHO05D004328 2.6e-08 62.8 59 59.3
Sopen08g029590 Solanum pennellii HOM05D000084 ORTHO05D004328 2.6e-08 62.8 59 59.3
PGSC0003DMG400012334 Solanum tuberosum HOM05D000084 ORTHO05D004328 2.6e-08 62.8 59 59.3
VMungo0464G0358 Vigna mungo HOM05D000084 ORTHO05D004328 2.6e-08 62.8 169 32.5
Zm00001eb350890 Zea mays HOM05D000084 ORTHO05D004328 2.6e-08 62.8 47 66.0
Aa31LG4G4020 Aethionema arabicum HOM05D000084 ORTHO05D004328 3.4e-08 62.4 42 76.2
Aqoxy1G01318 Aquilegia oxysepala HOM05D000084 ORTHO05D004328 3.4e-08 62.4 59 57.6
AL2G24910 Arabidopsis lyrata HOM05D000084 ORTHO05D004328 3.4e-08 62.4 41 75.6
AT1G66750 Arabidopsis thaliana HOM05D000084 ORTHO05D004328 3.4e-08 62.4 41 75.6
BcaB03g15235 Brassica carinata HOM05D000084 ORTHO05D004328 3.4e-08 62.4 41 75.6
BcaC08g46139 Brassica carinata HOM05D000084 ORTHO05D004328 3.4e-08 62.4 41 75.6
A07p33580 Brassica napus HOM05D000084 ORTHO05D004328 3.4e-08 62.4 41 75.6
C06p40130 Brassica napus HOM05D000084 ORTHO05D004328 3.4e-08 62.4 41 75.6
BolC6t39093H Brassica oleracea HOM05D000084 ORTHO05D004328 3.4e-08 62.4 41 75.6
Carub.0002s1297 Capsella rubella HOM05D000084 ORTHO05D004328 3.4e-08 62.4 41 75.6
CARHR058850 Cardamine hirsuta HOM05D000084 ORTHO05D004328 3.4e-08 62.4 41 75.6
MBI17_g13559_MAGBIO Magnolia biondii HOM05D000084 ORTHO05D004328 3.4e-08 62.4 47 68.1
Nn4g24029 Nelumbo nucifera HOM05D000084 ORTHO05D004328 3.4e-08 62.4 47 68.1
Aa31LG2G3220 Aethionema arabicum HOM05D000084 ORTHO05D004328 4.5e-08 62.0 47 66.0
Sp5g21710 Schrenkiella parvula HOM05D000084 ORTHO05D004328 4.5e-08 62.0 41 75.6
GSVIVG01008372001 Vitis vinifera HOM05D000084 ORTHO05D004328 4.5e-08 62.0 47 68.1
GSVIVG01030954001 Vitis vinifera HOM05D000084 ORTHO05D004328 4.5e-08 62.0 47 66.0
AagrBONN_evm.TU.Sc2ySwM_228.1705 Anthoceros agrestis HOM05D000084 ORTHO05D004328 5.8e-08 61.6 47 68.1
Glyma.07G100200 Glycine max HOM05D000084 ORTHO05D004328 5.8e-08 61.6 59 57.6
Glyma.09G178500 Glycine max HOM05D000084 ORTHO05D004328 5.8e-08 61.6 59 57.6
Lalb_Chr16g0387231 Lupinus albus HOM05D000084 ORTHO05D004328 5.8e-08 61.6 47 66.0
SGA_v2.0_scaffold19G08797 Striga asiatica HOM05D000084 ORTHO05D004328 5.8e-08 61.6 54 63.0
TPR.G20909 Trifolium pratense HOM05D000084 ORTHO05D004328 5.8e-08 61.6 47 68.1
Lsat_1_v5_gn_9_6940 Lactuca sativa HOM05D000084 ORTHO05D004328 7.6e-08 61.2 108 39.8
Nn1g02213 Nelumbo nucifera HOM05D000084 ORTHO05D004328 7.6e-08 61.2 47 66.0
Pp3c1_19220 Physcomitrium patens HOM05D000084 ORTHO05D004328 7.6e-08 61.2 47 66.0
Pp3c2_15020 Physcomitrium patens HOM05D000084 ORTHO05D004328 7.6e-08 61.2 59 55.9
SEGI_05841 Sequoiadendron giganteum HOM05D000084 ORTHO05D004328 7.6e-08 61.2 42 69.0
THA.LOC104813910 Tarenaya hassleriana HOM05D000084 ORTHO05D004328 7.6e-08 61.2 47 68.1
AT1G18040 Arabidopsis thaliana HOM05D000084 ORTHO05D004328 9.9e-08 60.8 47 68.1
Zm00001eb287310 Zea mays HOM05D000084 ORTHO05D004328 9.9e-08 60.8 47 63.8
Actinidia17118 Actinidia chinensis HOM05D000084 ORTHO05D004328 1.3e-07 60.5 172 32.0
CARHR066760 Cardamine hirsuta HOM05D000084 ORTHO05D004328 1.3e-07 60.5 47 66.0
Sed0022626 Sechium edule HOM05D000084 ORTHO05D004328 1.3e-07 60.5 59 55.9
ClCG06G014500 Citrullus lanatus HOM05D000084 ORTHO05D004328 1.7e-07 60.1 59 55.9
MELO3C017342.2 Cucumis melo HOM05D000084 ORTHO05D004328 1.7e-07 60.1 59 55.9
CsaV3_1G004160 Cucumis sativus L. HOM05D000084 ORTHO05D004328 1.7e-07 60.1 59 55.9
PSO017G4401 Papaver somniferum HOM05D000084 ORTHO05D004328 1.7e-07 60.1 47 66.0
PSO478G5246 Papaver somniferum HOM05D000084 ORTHO05D004328 1.7e-07 60.1 47 66.0
Sed0001871 Sechium edule HOM05D000084 ORTHO05D004328 1.7e-07 60.1 59 55.9
AUR62029943 Chenopodium quinoa HOM05D000084 ORTHO05D004328 2.2e-07 59.7 171 29.8
Rhsim08G0129200 Rhododendron simsii HOM05D000084 ORTHO05D004328 2.2e-07 59.7 162 35.8
THA.LOC104822578 Tarenaya hassleriana HOM05D000084 ORTHO05D004328 2.2e-07 59.7 53 60.4
Hund02338 Selenicereus undatus HOM05D000084 ORTHO05D004328 2.9e-07 59.3 59 52.5
unitig_26.g9675 Utricularia gibba HOM05D000084 ORTHO05D004328 2.9e-07 59.3 54 61.1
Cpa.g.sc170.18 Carica papaya HOM05D000084 ORTHO05D004328 4.9e-07 58.5 59 54.2
RcHm_v2.0_Chr7g0179131 Rosa chinensis HOM05D000084 ORTHO05D004328 4.9e-07 58.5 54 59.3
CSS0036007 Camellia sinensis var. sinensis HOM05D000084 ORTHO05D004328 6.4e-07 58.2 59 55.9
CSS0043950 Camellia sinensis var. sinensis HOM05D000084 ORTHO05D004328 6.4e-07 58.2 59 55.9
Lj5A154G73 Lonicera japonica HOM05D000084 ORTHO05D004328 6.4e-07 58.2 52 61.5
Medtr3g054080 Medicago truncatula HOM05D000084 ORTHO05D004328 6.4e-07 58.2 44 63.6
TPR.G22790 Trifolium pratense HOM05D000084 ORTHO05D004328 6.4e-07 58.2 44 63.6
vmacro17520 Vaccinium macrocarpon HOM05D000084 ORTHO05D004328 6.4e-07 58.2 59 55.9
vmacro23486 Vaccinium macrocarpon HOM05D000084 ORTHO05D004328 6.4e-07 58.2 59 55.9
EL10Ac5g11508 Beta vulgaris HOM05D000084 ORTHO05D004328 1.1e-06 57.4 59 52.5
BcaB03g15074 Brassica carinata HOM05D000084 ORTHO05D004328 1.4e-06 57.0 47 61.7
BcaC08g46788 Brassica carinata HOM05D000084 ORTHO05D004328 1.4e-06 57.0 47 61.7
C06p47790 Brassica napus HOM05D000084 ORTHO05D004328 1.4e-06 57.0 47 61.7
BolC6t39818H Brassica oleracea HOM05D000084 ORTHO05D004328 1.4e-06 57.0 47 61.7
TPR.G6102 Trifolium pratense HOM05D000084 ORTHO05D004328 1.4e-06 57.0 44 61.4
CDE05G1124 Ceratophyllum demersum HOM05D000084 ORTHO05D004328 2.4e-06 56.2 48 58.3
Ah.02g115600 Amaranthus hybridus HOM05D000084 ORTHO05D004328 3.2e-06 55.8 54 53.7
A07p39550 Brassica napus HOM05D000084 ORTHO05D004328 3.2e-06 55.8 47 59.6
BraA07t31504Z Brassica rapa HOM05D000084 ORTHO05D004328 3.2e-06 55.8 47 59.6
Sc14g0006940 Simmondsia chinensis HOM05D000084 ORTHO05D004328 3.2e-06 55.8 59 50.8
Pp3c14_5110 Physcomitrium patens HOM05D000084 ORTHO05D004328 4.2e-06 55.5 47 59.6
CDE11G0389 Ceratophyllum demersum HOM05D000084 ORTHO05D004328 9.3e-06 54.3 47 57.4


User provided reference genes

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