Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr10.1801 Acer truncatum HOM05D007882 ORTHO05D009870 2.0e-88 328.9 156 100.0
TWI38G0780 Tripterygium wilfordii HOM05D007882 ORTHO05D009870 2.4e-68 262.3 156 77.6
Potri.004G048400 Populus trichocarpa HOM05D007882 ORTHO05D009870 2.6e-67 258.8 156 78.2
Duzib235G1325 Durio zibethinus HOM05D007882 ORTHO05D009870 1.9e-65 252.7 156 75.0
Sabra04G0030400 Salix brachista HOM05D007882 ORTHO05D009870 1.9e-65 252.7 156 76.3
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 3.2e-65 251.9 152 77.6
CSS0041544 Camellia sinensis var. sinensis HOM05D007882 ORTHO05D009870 5.4e-65 251.1 150 78.0
Manes.17G049100 Manihot esculenta HOM05D007882 ORTHO05D009870 9.3e-65 250.4 156 75.6
Cfa000524 Carpinus fangiana HOM05D007882 ORTHO05D009870 1.6e-64 249.6 152 77.6
Manes.16G031800 Manihot esculenta HOM05D007882 ORTHO05D009870 2.1e-64 249.2 156 75.0
QL05p042203 Quercus lobata HOM05D007882 ORTHO05D009870 2.7e-64 248.8 157 75.2
CiPaw.10G052500 Carya illinoinensis HOM05D007882 ORTHO05D009870 1.3e-63 246.5 151 76.2
Gorai.009G166900 Gossypium raimondii HOM05D007882 ORTHO05D009870 5.1e-63 244.6 156 71.8
Gohir.A05G159200 Gossypium hirsutum HOM05D007882 ORTHO05D009870 8.7e-63 243.8 156 71.8
Prupe.4G052300 Prunus persica HOM05D007882 ORTHO05D009870 8.7e-63 243.8 150 76.0
Nn1g06425 Nelumbo nucifera HOM05D007882 ORTHO05D009870 4.3e-62 241.5 152 73.7
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 4.3e-62 241.5 150 74.0
Thecc.06G181400 Theobroma cacao HOM05D007882 ORTHO05D009870 5.6e-62 241.1 156 71.2
Cc02_g13810 Coffea canephora HOM05D007882 ORTHO05D009870 2.1e-61 239.2 148 72.3
COL.COLO4_31420 Corchorus olitorius HOM05D007882 ORTHO05D009870 6.2e-61 237.7 150 74.0
CANSAT35G1953 Cannabis sativa HOM05D007882 ORTHO05D009870 8.1e-61 237.3 148 76.4
Ciclev10017073m.g Citrus clementina HOM05D007882 ORTHO05D009870 4.0e-60 235.0 156 69.2
Gohir.D05G161900 Gossypium hirsutum HOM05D007882 ORTHO05D009870 6.9e-60 234.2 150 71.3
CAN.G529.52 Capsicum annuum HOM05D007882 ORTHO05D009870 1.2e-59 233.4 150 70.0
TPR.G789 Trifolium pratense HOM05D007882 ORTHO05D009870 1.5e-59 233.0 150 70.0
Medtr2g014430 Medicago truncatula HOM05D007882 ORTHO05D009870 3.4e-59 231.9 150 70.0
Oeu012151.1 Olea europaea HOM05D007882 ORTHO05D009870 3.4e-59 231.9 156 67.9
TAR627G1093 Trochodendron aralioides HOM05D007882 ORTHO05D009870 1.7e-58 229.6 150 72.7
Lalb_Chr18g0059401 Lupinus albus HOM05D007882 ORTHO05D009870 1.1e-57 226.9 152 69.1
Rhsim02G0134400 Rhododendron simsii HOM05D007882 ORTHO05D009870 1.1e-57 226.9 149 70.5
ClCG00G004760 Citrullus lanatus HOM05D007882 ORTHO05D009870 3.2e-57 225.3 154 67.5
ClCG01G023240 Citrullus lanatus HOM05D007882 ORTHO05D009870 3.2e-57 225.3 154 67.5
MD10G1289500 Malus domestica HOM05D007882 ORTHO05D009870 4.2e-57 224.9 153 68.6
FvH4_3g08670 Fragaria vesca HOM05D007882 ORTHO05D009870 7.1e-57 224.2 149 71.1
RcHm_v2.0_Chr5g0009121 Rosa chinensis HOM05D007882 ORTHO05D009870 7.1e-57 224.2 152 69.1
Psat1g202760 Pisum sativum HOM05D007882 ORTHO05D009870 9.3e-57 223.8 150 66.0
MELO3C007262.2 Cucumis melo HOM05D007882 ORTHO05D009870 1.6e-56 223.0 154 66.9
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 2.1e-56 222.6 149 70.5
FAN16G0532 Fragaria x ananassa HOM05D007882 ORTHO05D009870 3.5e-56 221.9 149 69.8
Eucgr.D00598 Eucalyptus grandis HOM05D007882 ORTHO05D009870 6.0e-56 221.1 154 64.9
FAN11G2645 Fragaria x ananassa HOM05D007882 ORTHO05D009870 6.0e-56 221.1 149 69.8
Lj6g0021640 Lotus japonicus HOM05D007882 ORTHO05D009870 6.0e-56 221.1 154 64.9
Aqoxy4G00631 Aquilegia oxysepala HOM05D007882 ORTHO05D009870 7.9e-56 220.7 156 67.9
PSO210G4689 Papaver somniferum HOM05D007882 ORTHO05D009870 1.3e-55 219.9 156 66.0
PSO210G1466 Papaver somniferum HOM05D007882 ORTHO05D009870 1.8e-55 219.5 156 67.3
arahy.Tifrunner.gnm1.ann1.CPZJ30 Arachis hypogaea HOM05D007882 ORTHO05D009870 3.0e-55 218.8 154 67.5
PGR004G2459 Punica granatum HOM05D007882 ORTHO05D009870 6.7e-55 217.6 156 65.4
Migut.M01110 Erythranthe guttata HOM05D007882 ORTHO05D009870 4.3e-54 214.9 157 65.0
Dinv40598 Davidia involucrata HOM05D007882 ORTHO05D009870 3.1e-52 208.8 138 71.7
Sed0022369 Sechium edule HOM05D007882 ORTHO05D009870 6.9e-52 207.6 150 66.7
Glyma.13G235900 Glycine max HOM05D007882 ORTHO05D009870 9.0e-52 207.2 154 66.2
Solyc02g077700.1 Solanum lycopersicum HOM05D007882 ORTHO05D009870 1.5e-51 206.5 150 64.0
SalBow8G2967 Salvia bowleyana HOM05D007882 ORTHO05D009870 2.0e-51 206.1 149 63.8
SalBow8G3626 Salvia bowleyana HOM05D007882 ORTHO05D009870 2.0e-51 206.1 149 63.8
Sp4g16270 Schrenkiella parvula HOM05D007882 ORTHO05D009870 2.0e-51 206.1 149 65.1
PGSC0003DMG400031764 Solanum tuberosum HOM05D007882 ORTHO05D009870 4.5e-51 204.9 150 63.3
SGA_v2.0_scaffold22G09668 Striga asiatica HOM05D007882 ORTHO05D009870 4.5e-51 204.9 155 59.4
Thhalv10017644m.g Eutrema salsugineum HOM05D007882 ORTHO05D009870 5.8e-51 204.5 149 65.8
C04p63420 Brassica napus HOM05D007882 ORTHO05D009870 1.3e-50 203.4 150 64.7
BolC4t27817H Brassica oleracea HOM05D007882 ORTHO05D009870 1.3e-50 203.4 150 64.7
Aa31LG9G13760 Aethionema arabicum HOM05D007882 ORTHO05D009870 1.7e-50 203.0 149 61.7
THA.LOC104820567 Tarenaya hassleriana HOM05D007882 ORTHO05D009870 1.7e-50 203.0 149 67.1
A04p26080 Brassica napus HOM05D007882 ORTHO05D009870 4.9e-50 201.4 150 64.0
BraA04t18110Z Brassica rapa HOM05D007882 ORTHO05D009870 4.9e-50 201.4 150 64.0
Phvul.006G182500 Phaseolus vulgaris HOM05D007882 ORTHO05D009870 1.1e-49 200.3 150 64.0
CARHR128020 Cardamine hirsuta HOM05D007882 ORTHO05D009870 1.4e-49 199.9 153 63.4
HanXRQChr01g0014401 Helianthus annuus HOM05D007882 ORTHO05D009870 1.2e-48 196.8 154 63.0
Nitab4.5_0001955g0180 Nicotiana tabacum HOM05D007882 ORTHO05D009870 3.0e-47 192.2 112 75.9
DCAR_028056 Daucus carota HOM05D007882 ORTHO05D009870 8.7e-47 190.7 155 61.9
CsaV3_6G050400 Cucumis sativus L. HOM05D007882 ORTHO05D009870 9.6e-46 187.2 125 69.6
AL4G29660 Arabidopsis lyrata HOM05D007882 ORTHO05D009870 1.6e-45 186.4 149 59.1
unitig_22.g6219 Utricularia gibba HOM05D007882 ORTHO05D009870 4.8e-45 184.9 153 57.5
Carub.0004s1556 Capsella rubella HOM05D007882 ORTHO05D009870 3.1e-44 182.2 150 59.3
AT2G33855 Arabidopsis thaliana HOM05D007882 ORTHO05D009870 4.0e-44 181.8 149 60.4
ATR0789G148 Amborella trichopoda HOM05D007882 ORTHO05D009870 1.1e-41 173.7 149 56.4
Ah.14g089690 Amaranthus hybridus HOM05D007882 ORTHO05D009870 6.7e-39 164.5 121 64.5
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 8.7e-39 164.1 125 64.8
MBI04_g06226_MAGBIO Magnolia biondii HOM05D007882 ORTHO05D009870 9.7e-38 160.6 155 54.2
Nn1g04229 Nelumbo nucifera HOM05D007882 ORTHO05D009870 2.2e-34 149.4 102 71.6
HPP92_022798 Vanilla planifolia HOM05D007882 ORTHO05D009870 6.1e-32 141.4 141 48.2
QL06p028733 Quercus lobata HOM05D007882 ORTHO05D009870 7.7e-27 124.4 102 65.7
Os04g0475300 Oryza sativa ssp. japonica HOM05D007882 ORTHO05D009870 5.7e-22 108.2 151 39.7
Zm00001eb079820 Zea mays HOM05D007882 ORTHO05D009870 2.4e-20 102.8 152 40.1
Sc17g0005950 Simmondsia chinensis HOM05D007447 ORTHO05D009372 5.2e-15 85.1 59 66.1
Cpa.g.sc27.7 Carica papaya HOM05D007882 ORTHO05D009870 8.8e-15 84.3 54 74.1
BcaC02g07777 Brassica carinata HOM05D007882 ORTHO05D009870 9.1e-12 74.3 83 45.8
Pp3c24_16730 Physcomitrium patens HOM05D031660 ORTHO05D009870 3.3e-06 55.8 84 34.5


User provided reference genes

Program Settings