Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr10.1684 Acer truncatum HOM05D005954 ORTHO05D007347 2.8e-57 225.3 138 100.0
Atru.chr10.1690 Acer truncatum HOM05D005954 ORTHO05D007347 1.2e-34 150.2 83 94.0
Ciclev10017015m.g Citrus clementina HOM05D005954 ORTHO05D007347 1.8e-27 126.3 80 80.0
Manes.16G037400 Manihot esculenta HOM05D005954 ORTHO05D007347 1.2e-26 123.6 74 86.5
GSVIVG01021193001 Vitis vinifera HOM05D005954 ORTHO05D007347 2.6e-26 122.5 80 78.8
Cpa.g.sc7.59 Carica papaya HOM05D005954 ORTHO05D007347 2.9e-25 119.0 76 82.9
Dinv04624 Davidia involucrata HOM05D005954 ORTHO05D007347 2.9e-25 119.0 80 76.2
Manes.17G054200 Manihot esculenta HOM05D005954 ORTHO05D007347 2.9e-25 119.0 83 77.1
TWI38G2142 Tripterygium wilfordii HOM05D005954 ORTHO05D007347 4.9e-25 118.2 76 81.6
Cfa000593 Carpinus fangiana HOM05D005954 ORTHO05D007347 8.3e-25 117.5 75 81.3
Sabra11G0046600 Salix brachista HOM05D005954 ORTHO05D007347 8.3e-25 117.5 80 78.8
Haze_06257 Corylus avellana HOM05D005954 ORTHO05D007347 1.4e-24 116.7 80 77.5
Eucgr.D00519 Eucalyptus grandis HOM05D005954 ORTHO05D007347 1.8e-24 116.3 77 79.2
Gohir.D05G158700 Gossypium hirsutum HOM05D005954 ORTHO05D007347 2.4e-24 115.9 80 77.5
Gorai.009G163700 Gossypium raimondii HOM05D005954 ORTHO05D007347 2.4e-24 115.9 80 77.5
Nn1g09054 Nelumbo nucifera HOM05D005954 ORTHO05D007347 2.4e-24 115.9 71 84.5
PGR004G0539 Punica granatum HOM05D005954 ORTHO05D007347 2.4e-24 115.9 79 77.2
PGR004G0737 Punica granatum HOM05D005954 ORTHO05D007347 2.4e-24 115.9 79 77.2
Thecc.06G173000 Theobroma cacao HOM05D005954 ORTHO05D007347 2.4e-24 115.9 80 77.5
Gohir.A05G156000 Gossypium hirsutum HOM05D005954 ORTHO05D007347 3.2e-24 115.5 80 77.5
Potri.011G064800 Populus trichocarpa HOM05D005954 ORTHO05D007347 3.2e-24 115.5 79 78.5
TAR626G1287 Trochodendron aralioides HOM05D005954 ORTHO05D007347 4.1e-24 115.2 80 75.0
CiPaw.09G068600 Carya illinoinensis HOM05D005954 ORTHO05D007347 7.0e-24 114.4 73 82.2
Duzib160G0806 Durio zibethinus HOM05D005954 ORTHO05D007347 9.2e-24 114.0 86 74.4
Thhalv10008967m.g Eutrema salsugineum HOM05D005954 ORTHO05D007347 9.2e-24 114.0 78 75.6
ClCG01G023670 Citrullus lanatus HOM05D005954 ORTHO05D007347 1.6e-23 113.2 79 75.9
MELO3C007218.2 Cucumis melo HOM05D005954 ORTHO05D007347 1.6e-23 113.2 80 73.8
CsaV3_6G050830 Cucumis sativus L. HOM05D005954 ORTHO05D007347 2.0e-23 112.8 80 73.8
C07p16610 Brassica napus HOM05D005954 ORTHO05D007347 2.7e-23 112.5 77 76.6
Gohir.A06G134004 Gossypium hirsutum HOM05D005954 ORTHO05D007347 2.7e-23 112.5 80 75.0
Gohir.D06G136500 Gossypium hirsutum HOM05D005954 ORTHO05D007347 2.7e-23 112.5 80 75.0
Gorai.010G158700 Gossypium raimondii HOM05D005954 ORTHO05D007347 2.7e-23 112.5 80 75.0
AL1G42790 Arabidopsis lyrata HOM05D005954 ORTHO05D007347 3.5e-23 112.1 72 79.2
CSS0014251 Camellia sinensis var. sinensis HOM05D005954 ORTHO05D007347 3.5e-23 112.1 80 71.2
DCAR_007962 Daucus carota HOM05D005954 ORTHO05D007347 3.5e-23 112.1 76 75.0
AT1G29070 Arabidopsis thaliana HOM05D005954 ORTHO05D007347 5.9e-23 111.3 72 79.2
arahy.Tifrunner.gnm1.ann1.N07IEU Arachis hypogaea HOM05D005954 ORTHO05D007347 5.9e-23 111.3 81 74.1
Carub.0001s2727 Capsella rubella HOM05D005954 ORTHO05D007347 5.9e-23 111.3 72 79.2
COL.COLO4_31320 Corchorus olitorius HOM05D005954 ORTHO05D007347 5.9e-23 111.3 80 73.8
QL05p046336 Quercus lobata HOM05D005954 ORTHO05D007347 5.9e-23 111.3 72 80.6
BcaNung06433 Brassica carinata HOM05D005954 ORTHO05D007347 1.0e-22 110.5 72 79.2
A08p25330 Brassica napus HOM05D005954 ORTHO05D007347 1.0e-22 110.5 72 79.2
BraA08t34485Z Brassica rapa HOM05D005954 ORTHO05D007347 1.0e-22 110.5 72 79.2
C03p75510 Brassica napus HOM05D005954 ORTHO05D007347 1.3e-22 110.2 72 79.2
FAN21G0082 Fragaria x ananassa HOM05D005954 ORTHO05D007347 1.3e-22 110.2 80 72.5
BcaB07g32486 Brassica carinata HOM05D005954 ORTHO05D007347 1.7e-22 109.8 72 79.2
BcaNung06755 Brassica carinata HOM05D005954 ORTHO05D007347 1.7e-22 109.8 72 79.2
A09p37340 Brassica napus HOM05D005954 ORTHO05D007347 1.7e-22 109.8 72 79.2
BraA09t39243Z Brassica rapa HOM05D005954 ORTHO05D007347 1.7e-22 109.8 72 79.2
Sp1g25010 Schrenkiella parvula HOM05D005954 ORTHO05D007347 1.7e-22 109.8 72 79.2
BcaC05g26922 Brassica carinata HOM05D005954 ORTHO05D007347 2.3e-22 109.4 72 79.2
C05p27750 Brassica napus HOM05D005954 ORTHO05D007347 2.3e-22 109.4 72 79.2
BolC5t31496H Brassica oleracea HOM05D005954 ORTHO05D007347 2.3e-22 109.4 72 79.2
RcHm_v2.0_Chr5g0010351 Rosa chinensis HOM05D005954 ORTHO05D007347 2.3e-22 109.4 75 76.0
CANSAT11G0094 Cannabis sativa HOM05D005954 ORTHO05D007347 2.9e-22 109.0 81 74.1
CARHR028290 Cardamine hirsuta HOM05D005954 ORTHO05D007347 2.9e-22 109.0 68 82.4
FvH4_3g07980 Fragaria vesca HOM05D005954 ORTHO05D007347 2.9e-22 109.0 80 71.2
FAN11G0799 Fragaria x ananassa HOM05D005954 ORTHO05D007347 2.9e-22 109.0 76 73.7
FAN16G0914 Fragaria x ananassa HOM05D005954 ORTHO05D007347 2.9e-22 109.0 80 71.2
MD05G1303200 Malus domestica HOM05D005954 ORTHO05D007347 5.0e-22 108.2 73 76.7
BolC3t19807H Brassica oleracea HOM05D005954 ORTHO05D007347 6.6e-22 107.8 71 78.9
MD10G1282300 Malus domestica HOM05D005954 ORTHO05D007347 6.6e-22 107.8 80 70.0
Aa31LG5G21180 Aethionema arabicum HOM05D005954 ORTHO05D007347 8.6e-22 107.5 74 75.7
THA.LOC104820590 Tarenaya hassleriana HOM05D005954 ORTHO05D007347 1.1e-21 107.1 70 81.4
Oeu001090.1 Olea europaea HOM05D005954 ORTHO05D007347 1.5e-21 106.7 76 71.1
Lj1P1194T69 Lonicera japonica HOM05D005954 ORTHO05D007347 2.5e-21 105.9 80 71.2
Peaxi162Scf00061g00155 Petunia axillaris HOM05D005954 ORTHO05D007347 3.3e-21 105.5 80 67.5
Prupe.4G059500 Prunus persica HOM05D005954 ORTHO05D007347 5.6e-21 104.8 80 67.5
Sed0006910 Sechium edule HOM05D005954 ORTHO05D007347 5.6e-21 104.8 80 70.0
Nitab4.5_0000117g0150 Nicotiana tabacum HOM05D005954 ORTHO05D007347 1.2e-20 103.6 80 67.5
Nitab4.5_0004274g0040 Nicotiana tabacum HOM05D005954 ORTHO05D007347 1.2e-20 103.6 80 67.5
CDE05G1458 Ceratophyllum demersum HOM05D005954 ORTHO05D007347 1.6e-20 103.2 90 67.8
arahy.Tifrunner.gnm1.ann1.YBYE48 Arachis hypogaea HOM05D005954 ORTHO05D007347 2.1e-20 102.8 69 82.6
Ah.09g233660 Amaranthus hybridus HOM05D005954 ORTHO05D007347 2.8e-20 102.4 72 75.0
EL10Ac8g20509 Beta vulgaris HOM05D005954 ORTHO05D007347 2.8e-20 102.4 72 76.4
Sc05g0007180 Simmondsia chinensis HOM05D005954 ORTHO05D007347 2.8e-20 102.4 78 69.2
Solyc01g056780.3 Solanum lycopersicum HOM05D005954 ORTHO05D007347 3.6e-20 102.1 77 67.5
AUR62031174 Chenopodium quinoa HOM05D005954 ORTHO05D007347 4.7e-20 101.7 75 69.3
PSO541G3988 Papaver somniferum HOM05D005954 ORTHO05D007347 6.1e-20 101.3 72 72.2
Phvul.006G176900 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 6.1e-20 101.3 79 65.8
Phvul.006G176980 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 6.1e-20 101.3 79 65.8
PGSC0003DMG400021493 Solanum tuberosum HOM05D005954 ORTHO05D007347 6.1e-20 101.3 81 64.2
Cc02_g14660 Coffea canephora HOM05D005954 ORTHO05D007347 8.0e-20 100.9 80 65.0
MSTRG.14726 Avicennia marina HOM05D005954 ORTHO05D007347 1.0e-19 100.5 80 65.0
AUR62036591 Chenopodium quinoa HOM05D005954 ORTHO05D007347 1.0e-19 100.5 72 72.2
SalBow8G3893 Salvia bowleyana HOM05D005954 ORTHO05D007347 1.0e-19 100.5 80 66.2
Zm00001eb150530 Zea mays HOM05D005954 ORTHO05D007347 1.0e-19 100.5 72 72.2
ECA236G0551 Erigeron canadensis HOM05D005954 ORTHO05D007347 1.4e-19 100.1 81 69.1
PSO675G5672 Papaver somniferum HOM05D005954 ORTHO05D007347 1.4e-19 100.1 72 70.8
Rhsim13G0191500 Rhododendron simsii HOM05D005954 ORTHO05D007347 1.4e-19 100.1 87 63.2
Glyma.13G230600 Glycine max HOM05D005954 ORTHO05D007347 1.8e-19 99.8 79 67.1
MBI13_g00561_MAGBIO Magnolia biondii HOM05D005954 ORTHO05D007347 2.3e-19 99.4 77 72.7
MD16G1032000 Malus domestica HOM05D005954 ORTHO05D007347 2.3e-19 99.4 76 67.1
Glyma.15G082000 Glycine max HOM05D005954 ORTHO05D007347 4.0e-19 98.6 79 67.1
Lalb_Chr20g0121221 Lupinus albus HOM05D005954 ORTHO05D007347 4.0e-19 98.6 66 78.8
ATR0602G014 Amborella trichopoda HOM05D005954 ORTHO05D007347 6.8e-19 97.8 69 73.9
MD16G1032400 Malus domestica HOM05D005954 ORTHO05D007347 6.8e-19 97.8 97 58.8
Hund23979 Selenicereus undatus HOM05D005954 ORTHO05D007347 1.2e-18 97.1 74 73.0
Sopen01g025250 Solanum pennellii HOM05D005954 ORTHO05D007347 1.2e-18 97.1 75 66.7
Lj6g0020578 Lotus japonicus HOM05D005954 ORTHO05D007347 2.0e-18 96.3 78 71.8
Medtr2g015790 Medicago truncatula HOM05D005954 ORTHO05D007347 2.0e-18 96.3 72 68.1
Migut.H01450 Erythranthe guttata HOM05D005954 ORTHO05D007347 2.6e-18 95.9 80 63.8
HanXRQChr04g0116001 Helianthus annuus HOM05D005954 ORTHO05D007347 2.6e-18 95.9 81 64.2
Lsat_1_v5_gn_7_23061 Lactuca sativa HOM05D005954 ORTHO05D007347 2.6e-18 95.9 81 65.4
vmacro01548 Vaccinium macrocarpon HOM05D005954 ORTHO05D007347 3.4e-18 95.5 93 60.2
CAN.G889.12 Capsicum annuum HOM05D005954 ORTHO05D007347 5.8e-18 94.7 73 67.1
Os01g0805000 Oryza sativa ssp. japonica HOM05D005954 ORTHO05D007347 5.8e-18 94.7 65 73.8
arahy.Tifrunner.gnm1.ann1.69550A Arachis hypogaea HOM05D005954 ORTHO05D007347 9.8e-18 94.0 66 75.8
Aqoxy1G03187 Aquilegia oxysepala HOM05D005954 ORTHO05D007347 3.7e-17 92.0 75 70.7
Ca_00467_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 3.7e-17 92.0 80 63.8
Ca_30955_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 3.7e-17 92.0 80 63.8
CDE02G3841 Ceratophyllum demersum HOM05D005954 ORTHO05D009675 4.9e-17 91.7 90 63.3
Psat1g199440 Pisum sativum HOM05D005954 ORTHO05D007347 4.9e-17 91.7 80 65.0
TPR.G11659 Trifolium pratense HOM05D005954 ORTHO05D007347 6.4e-17 91.3 79 60.8
HPP92_016045 Vanilla planifolia HOM05D005954 ORTHO05D007347 6.4e-17 91.3 70 71.4
unitig_22.g6753 Utricularia gibba HOM05D005954 ORTHO05D007347 8.3e-17 90.9 69 66.7
MD10G1067400 Malus domestica HOM05D005954 ORTHO05D007347 3.2e-16 89.0 80 60.0
SGA_v2.0_scaffold1G00032 Striga asiatica HOM05D005954 ORTHO05D007347 5.4e-16 88.2 79 64.6
CARHR028330 Cardamine hirsuta HOM05D005954 ORTHO05D007347 4.6e-15 85.1 57 77.2
BcaC06g35397 Brassica carinata HOM05D005954 ORTHO05D007347 2.5e-13 79.3 77 58.4
MD16G1032600 Malus domestica HOM05D005954 ORTHO05D007347 3.1e-11 72.4 51 74.5
SEGI_22528 Sequoiadendron giganteum HOM05D005954 ORTHO05D007347 1.2e-10 70.5 67 62.7
CBR_g29683 Chara braunii HOM05D005954 ORTHO05D007347 1.5e-10 70.1 67 58.2
Pp3c18_19220 Physcomitrium patens HOM05D005954 ORTHO05D007347 1.5e-10 70.1 67 61.2
Pp3c21_6450 Physcomitrium patens HOM05D005954 ORTHO05D007347 4.4e-10 68.6 67 59.7
AagrBONN_evm.TU.Sc2ySwM_117.1983 Anthoceros agrestis HOM05D005954 ORTHO05D007347 9.8e-10 67.4 62 62.9
Mapoly0043s0046 Marchantia polymorpha HOM05D005954 ORTHO05D007347 1.9e-08 63.2 67 59.7
Nn3g19836 Nelumbo nucifera HOM05D005954 ORTHO05D007347 5.1e-06 55.1 44 65.9


User provided reference genes

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