Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr10.1658 Acer truncatum HOM05D005280 ORTHO05D006253 2.5e-85 319.7 318 100.0
Ciclev10015974m.g Citrus clementina HOM05D005280 ORTHO05D006253 2.5e-80 303.1 250 94.4
THA.LOC104804949 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 6.5e-73 278.5 250 89.2
Duzib160G0285 Durio zibethinus HOM05D005280 ORTHO05D006253 1.1e-72 277.7 250 86.8
Aa31LG6G6330 Aethionema arabicum HOM05D005280 ORTHO05D006253 2.5e-72 276.6 250 88.8
THA.LOC104812639 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 2.5e-72 276.6 250 89.6
RcHm_v2.0_Chr5g0010881 Rosa chinensis HOM05D005280 ORTHO05D006253 5.5e-72 275.4 253 88.1
TWI38G0304 Tripterygium wilfordii HOM05D005280 ORTHO05D006253 9.4e-72 274.6 252 88.9
Dinv40681 Davidia involucrata HOM05D005280 ORTHO05D006253 1.6e-71 273.9 250 87.2
Manes.17G056200 Manihot esculenta HOM05D005280 ORTHO05D006253 1.6e-71 273.9 252 89.3
Potri.004G057600 Populus trichocarpa HOM05D005280 ORTHO05D006253 1.6e-71 273.9 251 88.4
ClCG01G023770 Citrullus lanatus HOM05D005280 ORTHO05D006253 2.1e-71 273.5 248 89.5
CsaV3_6G050930 Cucumis sativus L. HOM05D005280 ORTHO05D006253 2.1e-71 273.5 248 89.5
MELO3C007211.2 Cucumis melo HOM05D005280 ORTHO05D006253 4.6e-71 272.3 248 89.1
FAN11G1284 Fragaria x ananassa HOM05D005280 ORTHO05D006253 7.9e-71 271.6 252 88.1
FAN16G3700 Fragaria x ananassa HOM05D005280 ORTHO05D006253 7.9e-71 271.6 252 88.5
Dinv16775 Davidia involucrata HOM05D005280 ORTHO05D006253 1.0e-70 271.2 248 87.5
FvH4_3g07730 Fragaria vesca HOM05D005280 ORTHO05D006253 1.0e-70 271.2 252 88.1
FAN21G3704 Fragaria x ananassa HOM05D005280 ORTHO05D006253 1.0e-70 271.2 252 88.1
FAN25G0161 Fragaria x ananassa HOM05D005280 ORTHO05D006253 1.0e-70 271.2 252 88.1
Lalb_Chr20g0117481 Lupinus albus HOM05D005280 ORTHO05D006253 1.0e-70 271.2 252 86.9
Ca_00439_v3 Cicer arietinum L. HOM05D005280 ORTHO05D006253 1.8e-70 270.4 252 86.9
Thhalv10008237m.g Eutrema salsugineum HOM05D005280 ORTHO05D006253 3.0e-70 269.6 250 87.6
MD10G1279400 Malus domestica HOM05D005280 ORTHO05D006253 3.9e-70 269.2 257 86.0
Haze_06226 Corylus avellana HOM05D005280 ORTHO05D006253 5.1e-70 268.9 250 88.8
CiPaw.10G059400 Carya illinoinensis HOM05D005280 ORTHO05D006253 6.7e-70 268.5 252 87.7
Glyma.13G229400 Glycine max HOM05D005280 ORTHO05D006253 6.7e-70 268.5 251 86.5
ECA236G4327 Erigeron canadensis HOM05D005280 ORTHO05D006253 1.1e-69 267.7 248 87.1
Sp1g25120 Schrenkiella parvula HOM05D005280 ORTHO05D006253 1.1e-69 267.7 249 88.0
BcaC05g26943 Brassica carinata HOM05D005280 ORTHO05D006253 2.0e-69 266.9 250 86.8
C05p27910 Brassica napus HOM05D005280 ORTHO05D006253 2.0e-69 266.9 250 86.8
BolC5t31517H Brassica oleracea HOM05D005280 ORTHO05D006253 2.0e-69 266.9 250 86.8
MD05G1300300 Malus domestica HOM05D005280 ORTHO05D006253 2.0e-69 266.9 259 85.3
A09p37140 Brassica napus HOM05D005280 ORTHO05D006253 2.5e-69 266.5 250 86.4
BraA09t39230Z Brassica rapa HOM05D005280 ORTHO05D006253 2.5e-69 266.5 250 86.4
Carub.0001s2739 Capsella rubella HOM05D005280 ORTHO05D006253 3.3e-69 266.2 250 86.8
HanXRQChr05g0139841 Helianthus annuus HOM05D005280 ORTHO05D006253 3.3e-69 266.2 248 87.1
Hma1.2p1_1912F.1_g307320 Hydrangea macrophylla HOM05D005280 ORTHO05D006253 3.3e-69 266.2 243 90.1
Lj6g0027668 Lotus japonicus HOM05D005280 ORTHO05D006253 3.3e-69 266.2 252 88.1
Manes.16G040400 Manihot esculenta HOM05D005280 ORTHO05D006253 3.3e-69 266.2 249 88.4
Phvul.006G175800 Phaseolus vulgaris HOM05D005280 ORTHO05D006253 3.3e-69 266.2 251 86.1
CARHR028510 Cardamine hirsuta HOM05D005280 ORTHO05D006253 4.3e-69 265.8 249 87.1
Medtr2g016160 Medicago truncatula HOM05D005280 ORTHO05D006253 4.3e-69 265.8 252 86.1
AT1G29260 Arabidopsis thaliana HOM05D005280 ORTHO05D006253 5.7e-69 265.4 250 87.2
arahy.Tifrunner.gnm1.ann1.8U8ZZM Arachis hypogaea HOM05D005280 ORTHO05D006253 7.4e-69 265.0 251 86.5
arahy.Tifrunner.gnm1.ann1.IM81E3 Arachis hypogaea HOM05D005280 ORTHO05D006253 7.4e-69 265.0 251 86.5
QL05p047377 Quercus lobata HOM05D005280 ORTHO05D006253 9.7e-69 264.6 251 86.5
Cfa000612 Carpinus fangiana HOM05D005280 ORTHO05D006253 1.7e-68 263.8 250 87.6
vmacro16064 Vaccinium macrocarpon HOM05D005280 ORTHO05D006253 2.8e-68 263.1 243 88.9
Lsat_1_v5_gn_7_24160 Lactuca sativa HOM05D005280 ORTHO05D006253 3.7e-68 262.7 246 87.4
Prupe.4G062000 Prunus persica HOM05D005280 ORTHO05D006253 3.7e-68 262.7 257 84.0
Psat1g197880 Pisum sativum HOM05D005280 ORTHO05D006253 4.8e-68 262.3 249 86.3
Sabra04G0037300 Salix brachista HOM05D005280 ORTHO05D006253 4.8e-68 262.3 248 87.5
Rhsim02G0143200 Rhododendron simsii HOM05D005280 ORTHO05D006253 4.1e-67 259.2 243 88.5
Lj1A206T60 Lonicera japonica HOM05D005280 ORTHO05D006253 1.2e-66 257.7 142 82.4
PGR042G3394 Punica granatum HOM05D005280 ORTHO05D006253 1.2e-66 257.7 250 84.4
AUR62017603 Chenopodium quinoa HOM05D005280 ORTHO05D006253 1.5e-66 257.3 252 84.9
Duzib192G0183 Durio zibethinus HOM05D005280 ORTHO05D006253 2.0e-66 256.9 142 80.3
AUR62015144 Chenopodium quinoa HOM05D005280 ORTHO05D006253 2.6e-66 256.5 252 84.9
Thecc.06G170100 Theobroma cacao HOM05D005280 ORTHO05D006253 3.4e-66 256.1 142 81.0
CSS0022801 Camellia sinensis var. sinensis HOM05D005280 ORTHO05D006253 4.5e-66 255.8 142 82.4
COL.COLO4_31288 Corchorus olitorius HOM05D005280 ORTHO05D006253 4.5e-66 255.8 142 79.6
SGA_v2.0_scaffold1G00053 Striga asiatica HOM05D005280 ORTHO05D006253 4.5e-66 255.8 248 85.1
Gohir.A10G036800 Gossypium hirsutum HOM05D005280 ORTHO05D006253 1.0e-65 254.6 142 78.9
Sed0011601 Sechium edule HOM05D005280 ORTHO05D006253 1.0e-65 254.6 142 83.8
Actinidia39510 Actinidia chinensis HOM05D005280 ORTHO05D006253 1.3e-65 254.2 142 82.4
Ah.01g013480 Amaranthus hybridus HOM05D005280 ORTHO05D006253 1.7e-65 253.8 252 84.1
Gorai.011G039400 Gossypium raimondii HOM05D005280 ORTHO05D006253 2.2e-65 253.4 142 78.9
Gohir.D10G037400 Gossypium hirsutum HOM05D005280 ORTHO05D006253 5.0e-65 252.3 142 78.2
Peaxi162Scf00871g00047 Petunia axillaris HOM05D005280 ORTHO05D006253 6.5e-65 251.9 248 85.5
PGSC0003DMG400009000 Solanum tuberosum HOM05D005280 ORTHO05D006253 6.5e-65 251.9 248 85.1
PGSC0003DMG400008719 Solanum tuberosum HOM05D005280 ORTHO05D006253 8.5e-65 251.5 248 85.1
DCAR_007943 Daucus carota HOM05D005280 ORTHO05D006253 1.1e-64 251.1 142 79.6
BcaC01g00082 Brassica carinata HOM05D005280 ORTHO05D006253 1.4e-64 250.8 142 81.7
C03p75590 Brassica napus HOM05D005280 ORTHO05D006253 1.4e-64 250.8 142 81.7
BolC3t19816H Brassica oleracea HOM05D005280 ORTHO05D006253 1.4e-64 250.8 142 81.7
SHI28515 Sapria himalayana HOM05D005280 ORTHO05D006253 1.4e-64 250.8 251 82.9
BraA08t34477Z Brassica rapa HOM05D005280 ORTHO05D006253 3.2e-64 249.6 142 81.0
EL10Ac9g22853 Beta vulgaris HOM05D005280 ORTHO05D006253 5.5e-64 248.8 143 81.1
BcaB07g32507 Brassica carinata HOM05D005280 ORTHO05D006253 5.5e-64 248.8 142 80.3
Solyc03g062940.3 Solanum lycopersicum HOM05D005280 ORTHO05D006253 5.5e-64 248.8 248 84.3
Sopen03g015240 Solanum pennellii HOM05D005280 ORTHO05D006253 5.5e-64 248.8 248 84.3
CANSAT80G2107 Cannabis sativa HOM05D005280 ORTHO05D006253 9.4e-64 248.1 143 81.8
BcaB03g12145 Brassica carinata HOM05D005280 ORTHO05D006253 1.2e-63 247.7 142 81.0
CAN.G206.30 Capsicum annuum HOM05D005280 ORTHO05D006253 1.2e-63 247.7 248 83.9
MBI05_g10770_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 1.2e-63 247.7 142 79.6
Glyma.15G083100 Glycine max HOM05D005280 ORTHO05D006253 1.6e-63 247.3 144 79.2
Sc05g0007070 Simmondsia chinensis HOM05D005280 ORTHO05D006253 2.1e-63 246.9 251 80.5
MBI07_g43934_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 6.1e-63 245.4 142 78.9
VMungo0540G1202 Vigna mungo HOM05D005280 ORTHO05D006253 6.1e-63 245.4 143 79.0
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.0e-62 244.6 248 82.3
AL1G42940 Arabidopsis lyrata HOM05D005280 ORTHO05D006253 1.4e-62 244.2 142 79.6
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.4e-62 244.2 248 82.3
HPP92_008751 Vanilla planifolia HOM05D005280 ORTHO05D006253 1.4e-62 244.2 250 82.0
Migut.M01035 Erythranthe guttata HOM05D005280 ORTHO05D006253 2.3e-62 243.4 242 86.0
PSO229G0003 Papaver somniferum HOM05D005280 ORTHO05D006253 3.0e-62 243.0 142 78.2
Nn1g04427 Nelumbo nucifera HOM05D005280 ORTHO05D006253 5.1e-62 242.3 142 77.5
PSO675G8759 Papaver somniferum HOM05D005280 ORTHO05D006253 1.1e-61 241.1 142 77.5
Cc02_g15040 Coffea canephora HOM05D005280 ORTHO05D006253 2.6e-61 240.0 146 78.1
Aqoxy170s003 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 4.4e-61 239.2 142 77.5
Aqoxy7G03216 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 4.4e-61 239.2 142 77.5
TAR629G2088 Trochodendron aralioides HOM05D005280 ORTHO05D006253 5.7e-61 238.8 142 77.5
unitig_699.g19366 Utricularia gibba HOM05D005280 ORTHO05D006253 9.7e-61 238.0 248 81.0
MSTRG.7412 Avicennia marina HOM05D005280 ORTHO05D006253 3.1e-59 233.0 142 75.4
CDE10G0374 Ceratophyllum demersum HOM05D005280 ORTHO05D006253 3.6e-55 219.5 142 68.3
Mapoly0030s0014 Marchantia polymorpha HOM05D005280 ORTHO05D006253 1.1e-48 198.0 142 63.4
Cpa.g.sc7.74 Carica papaya HOM05D005280 ORTHO05D006253 4.2e-48 196.1 250 77.6
A08p25250 Brassica napus HOM05D005280 ORTHO05D006253 5.2e-46 189.1 142 64.8
Pp3c17_8040 Physcomitrium patens HOM05D005280 ORTHO05D006253 4.4e-45 186.0 142 57.7
SMO119G0322 Selaginella moellendorffii HOM05D005280 ORTHO05D006253 2.2e-44 183.7 142 60.6
Zm00001eb238680 Zea mays HOM05D005280 ORTHO05D006253 8.3e-44 181.8 144 56.9
PSO782G3364 Papaver somniferum HOM05D005280 ORTHO05D006253 1.8e-43 180.6 115 72.2
Cre17.g730200 Chlamydomonas reinhardtii HOM05D005280 ORTHO05D006253 2.0e-42 177.2 138 57.2
Sabra11G0048200 Salix brachista HOM05D005280 ORTHO05D006253 1.1e-40 171.4 211 80.6
Aqoxy1G02047 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 2.1e-39 167.2 105 74.3
AagrBONN_evm.TU.Sc2ySwM_117.3414 Anthoceros agrestis HOM05D005280 ORTHO05D006253 8.0e-39 165.2 142 57.7
PRCOL_00004365 Prasinoderma coloniale HOM05D005280 ORTHO05D006253 1.4e-35 154.5 109 64.2
SEGI_31924 Sequoiadendron giganteum HOM05D005280 ORTHO05D006253 1.8e-35 154.1 250 67.6
CBR_g23503 Chara braunii HOM05D005280 ORTHO05D006253 7.7e-34 148.7 140 50.0
ATR0706G060 Amborella trichopoda HOM05D005280 ORTHO05D006253 4.0e-30 136.3 113 60.2
Pp3c15_2410 Physcomitrium patens HOM05D005280 ORTHO05D006253 1.3e-28 131.3 130 48.5
MCO15G120 Micromonas commoda HOM05D005280 ORTHO05D006253 2.8e-28 130.2 110 58.2
AUR62034161 Chenopodium quinoa HOM05D005280 ORTHO05D006253 1.7e-20 104.4 143 42.7
MBI16_g15539_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 6.6e-17 92.4 142 38.7
Dinv41375 Davidia involucrata HOM05D000140 ORTHO05D000087 4.4e-13 79.7 119 42.9
Potri.011G066600 Populus trichocarpa HOM05D005280 ORTHO05D006253 2.4e-11 73.9 140 78.6
FAN14G0286 Fragaria x ananassa HOM05D005280 ORTHO05D019446 1.6e-10 71.2 118 39.0
VMungo1383G1864 Vigna mungo HOM05D005280 ORTHO05D006253 2.5e-08 63.9 35 74.3
VMungo0331G0944 Vigna mungo HOM05D005280 ORTHO05D006253 7.3e-08 62.4 136 74.3


User provided reference genes

Program Settings