Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr10.1568 Acer truncatum HOM05D005059 ORTHO05D004248 8.6e-54 213.4 107 100.0
Thecc.06G165400 Theobroma cacao HOM05D005059 ORTHO05D004248 2.4e-24 115.5 91 71.4
Ciclev10018148m.g Citrus clementina HOM05D005059 ORTHO05D004248 9.3e-24 113.6 91 68.1
COL.COLO4_31233 Corchorus olitorius HOM05D005059 ORTHO05D004248 2.1e-23 112.5 95 64.2
Potri.004G061300 Populus trichocarpa HOM05D005059 ORTHO05D004248 3.0e-22 108.6 102 63.7
Sabra04G0040600 Salix brachista HOM05D005059 ORTHO05D004248 3.9e-22 108.2 100 64.0
Gohir.A05G153400 Gossypium hirsutum HOM05D005059 ORTHO05D004248 3.3e-21 105.1 93 67.7
Gohir.D05G156000 Gossypium hirsutum HOM05D005059 ORTHO05D004248 1.6e-20 102.8 93 66.7
Gorai.009G160500 Gossypium raimondii HOM05D005059 ORTHO05D004248 1.6e-20 102.8 93 66.7
Potri.011G070500 Populus trichocarpa HOM05D005059 ORTHO05D004248 6.9e-19 97.4 100 61.0
Gorai.010G161500 Gossypium raimondii HOM05D005059 ORTHO05D004248 3.4e-18 95.1 95 65.3
TAR626G0600 Trochodendron aralioides HOM05D005059 ORTHO05D004248 3.4e-18 95.1 90 62.2
Sabra11G0055200 Salix brachista HOM05D005059 ORTHO05D004248 4.5e-18 94.7 97 56.7
Sopen02g021130 Solanum pennellii HOM05D005059 ORTHO05D004248 4.5e-18 94.7 79 62.0
PGSC0003DMG400028485 Solanum tuberosum HOM05D005059 ORTHO05D004248 4.5e-18 94.7 89 58.4
Gohir.D06G138900 Gossypium hirsutum HOM05D005059 ORTHO05D004248 1.3e-17 93.2 95 65.3
QL05p049931 Quercus lobata HOM05D005059 ORTHO05D004248 2.2e-17 92.4 87 57.5
TAR627G0439 Trochodendron aralioides HOM05D005059 ORTHO05D004248 3.8e-17 91.7 92 58.7
CAN.G411.50 Capsicum annuum HOM05D005059 ORTHO05D004248 6.4e-17 90.9 89 58.4
Manes.16G042800 Manihot esculenta HOM05D005059 ORTHO05D004248 1.1e-16 90.1 88 61.4
Haze_06169 Corylus avellana HOM05D005059 ORTHO05D004248 1.4e-16 89.7 92 55.4
Nn6g34461 Nelumbo nucifera HOM05D005059 ORTHO05D004248 1.9e-16 89.4 91 54.9
Gohir.A06G133800 Gossypium hirsutum HOM05D005059 ORTHO05D004248 2.4e-16 89.0 95 63.2
TAR624G0872 Trochodendron aralioides HOM05D005059 ORTHO05D004248 2.4e-16 89.0 81 60.5
Manes.17G059300 Manihot esculenta HOM05D005059 ORTHO05D004248 7.1e-16 87.4 92 54.3
CiPaw.09G073100 Carya illinoinensis HOM05D005059 ORTHO05D004248 1.6e-15 86.3 92 55.4
Glyma.13G226600 Glycine max HOM05D005059 ORTHO05D004248 2.1e-15 85.9 91 54.9
MBI06_g16696_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 2.7e-15 85.5 80 53.8
Medtr8g087390 Medicago truncatula HOM05D005059 ORTHO05D004248 2.7e-15 85.5 97 52.6
Prupe.4G067000 Prunus persica HOM05D005059 ORTHO05D004248 3.5e-15 85.1 88 56.8
TAR624G0770 Trochodendron aralioides HOM05D005059 ORTHO05D004248 3.5e-15 85.1 81 58.0
Glyma.08G118500 Glycine max HOM05D005059 ORTHO05D004248 1.3e-14 83.2 84 57.1
TWI53G1149 Tripterygium wilfordii HOM05D005059 ORTHO05D004248 1.8e-14 82.8 95 53.7
Cfa000656 Carpinus fangiana HOM05D005059 ORTHO05D004248 3.0e-14 82.0 94 52.1
Hma1.2p1_0113F.1_g055120 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 3.0e-14 82.0 83 54.2
Oeu040922.1 Olea europaea HOM05D005059 ORTHO05D004248 3.0e-14 82.0 88 54.5
Phvul.006G173000 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 5.1e-14 81.3 84 53.6
Dinv12752 Davidia involucrata HOM05D005059 ORTHO05D004248 6.7e-14 80.9 59 67.8
Lsat_1_v5_gn_7_25601 Lactuca sativa HOM05D005059 ORTHO05D004248 8.7e-14 80.5 80 57.5
CiPaw.10G061800 Carya illinoinensis HOM05D005059 ORTHO05D004248 1.1e-13 80.1 85 54.1
Oeu060173.1 Olea europaea HOM05D005059 ORTHO05D004248 1.1e-13 80.1 84 54.8
Psat7g068640 Pisum sativum HOM05D005059 ORTHO05D004248 1.1e-13 80.1 91 51.6
FAN21G0043 Fragaria x ananassa HOM05D005059 ORTHO05D004248 1.5e-13 79.7 96 54.2
FAN25G1124 Fragaria x ananassa HOM05D005059 ORTHO05D004248 1.5e-13 79.7 96 54.2
Nn3g21078 Nelumbo nucifera HOM05D005059 ORTHO05D004248 1.5e-13 79.7 91 50.5
Oeu043118.1 Olea europaea HOM05D005059 ORTHO05D004248 1.9e-13 79.3 88 53.4
Dinv18371 Davidia involucrata HOM05D000126 ORTHO05D000085 2.5e-13 79.0 82 53.7
Ca_17896_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 3.3e-13 78.6 82 54.9
FAN16G0464 Fragaria x ananassa HOM05D005059 ORTHO05D004248 3.3e-13 78.6 96 53.1
Lj4g0014521 Lotus japonicus HOM05D005059 ORTHO05D004248 3.3e-13 78.6 85 55.3
Phvul.002G241108 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 4.3e-13 78.2 85 54.1
TPR.G6728 Trifolium pratense HOM05D005059 ORTHO05D004248 5.6e-13 77.8 91 52.7
MSTRG.13233 Avicennia marina HOM05D005059 ORTHO05D004248 1.3e-12 76.6 81 53.1
CSS0038855 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 1.3e-12 76.6 88 51.1
FvH4_3g07300 Fragaria vesca HOM05D005059 ORTHO05D004248 1.6e-12 76.3 96 53.1
MD00G1009200 Malus domestica HOM05D005059 ORTHO05D004248 1.6e-12 76.3 90 54.4
MD00G1221100 Malus domestica HOM05D005059 ORTHO05D004248 1.6e-12 76.3 90 54.4
MD10G1275500 Malus domestica HOM05D005059 ORTHO05D004248 1.6e-12 76.3 87 55.2
SalBow7G3765 Salvia bowleyana HOM05D005059 ORTHO05D004248 2.1e-12 75.9 87 50.6
Aqoxy4G00224 Aquilegia oxysepala HOM05D005059 ORTHO05D004248 2.8e-12 75.5 92 50.0
FAN11G2282 Fragaria x ananassa HOM05D005059 ORTHO05D004248 2.8e-12 75.5 96 53.1
RcHm_v2.0_Chr5g0011661 Rosa chinensis HOM05D005059 ORTHO05D004248 2.8e-12 75.5 96 51.0
arahy.Tifrunner.gnm1.ann1.YNVN02 Arachis hypogaea HOM05D005059 ORTHO05D004248 3.7e-12 75.1 95 52.6
Dinv32337 Davidia involucrata HOM05D005059 ORTHO05D004248 4.8e-12 74.7 83 55.4
Migut.H01411 Erythranthe guttata HOM05D005059 ORTHO05D004248 4.8e-12 74.7 83 48.2
Oeu060178.1 Olea europaea HOM05D005059 ORTHO05D004248 1.1e-11 73.6 84 48.8
Lalb_Chr18g0054771 Lupinus albus HOM05D005059 ORTHO05D004248 1.8e-11 72.8 76 53.9
DCAR_005145 Daucus carota HOM05D005059 ORTHO05D004248 3.1e-11 72.0 87 48.3
Lj6g0009726 Lotus japonicus HOM05D005059 ORTHO05D004248 3.1e-11 72.0 95 48.4
DCAR_027980 Daucus carota HOM05D005059 ORTHO05D004248 4.0e-11 71.6 88 46.6
Cc02_g15600 Coffea canephora HOM05D005059 ORTHO05D004248 1.2e-10 70.1 87 48.3
Glyma.05G161100 Glycine max HOM05D005059 ORTHO05D004248 1.2e-10 70.1 77 54.5
Psat1g194640 Pisum sativum HOM05D005059 ORTHO05D004248 1.2e-10 70.1 99 45.5
CSS0004272 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 2.0e-10 69.3 83 49.4
Glyma.15G085800 Glycine max HOM05D005059 ORTHO05D004248 2.0e-10 69.3 89 47.2
Lalb_Chr15g0086331 Lupinus albus HOM05D005059 ORTHO05D004248 2.0e-10 69.3 95 47.4
arahy.Tifrunner.gnm1.ann1.YXRF57 Arachis hypogaea HOM05D005059 ORTHO05D004248 2.6e-10 68.9 94 47.9
Ca_00473_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 4.5e-10 68.2 92 45.7
Eucgr.D00466 Eucalyptus grandis HOM05D005059 ORTHO05D004248 5.8e-10 67.8 94 46.8
TAR627G0061 Trochodendron aralioides HOM05D005059 ORTHO05D004248 5.8e-10 67.8 86 51.2
PGR042G3020 Punica granatum HOM05D005059 ORTHO05D004248 1.0e-09 67.0 94 46.8
TAR629G2882 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.0e-09 67.0 83 47.0
AUR62039479 Chenopodium quinoa HOM05D005059 ORTHO05D004248 1.3e-09 66.6 61 65.6
MBI07_g00460_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 1.3e-09 66.6 48 64.6
Nitab4.5_0000788g0070 Nicotiana tabacum HOM05D005059 ORTHO05D004248 1.3e-09 66.6 93 43.0
Rhsim13G0187800 Rhododendron simsii HOM05D005059 ORTHO05D004248 1.3e-09 66.6 92 46.7
SalBow8G0022 Salvia bowleyana HOM05D005059 ORTHO05D004248 1.3e-09 66.6 52 63.5
DCAR_027979 Daucus carota HOM05D005059 ORTHO05D004248 1.7e-09 66.2 48 66.7
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 1.7e-09 66.2 65 52.3
CDE02G4707 Ceratophyllum demersum HOM05D001096 ORTHO05D001629 2.2e-09 65.9 81 46.9
Migut.M01008 Erythranthe guttata HOM05D005059 ORTHO05D004248 2.9e-09 65.5 87 47.1
BcaB03g13892 Brassica carinata HOM05D005059 ORTHO05D004248 1.4e-08 63.2 93 41.9
CSS0000215 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 1.4e-08 63.2 84 47.6
Rhsim13G0187700 Rhododendron simsii HOM05D005059 ORTHO05D004248 1.9e-08 62.8 92 46.7
SGA_v2.0_scaffold1G00085 Striga asiatica HOM05D005059 ORTHO05D004248 3.2e-08 62.0 89 41.6
AT1G29290 Arabidopsis thaliana HOM05D005059 ORTHO05D004248 4.2e-08 61.6 91 40.7
CARHR028610 Cardamine hirsuta HOM05D005059 ORTHO05D004248 4.2e-08 61.6 93 38.7
Thecc.07G128100 Theobroma cacao HOM05D008890 ORTHO05D004248 4.2e-08 61.6 85 47.1
Dinv15004 Davidia involucrata HOM05D005059 ORTHO05D004248 5.5e-08 61.2 67 56.7
A07p10740 Brassica napus HOM05D005059 ORTHO05D004248 1.2e-07 60.1 93 39.8
BraA07t28869Z Brassica rapa HOM05D005059 ORTHO05D004248 1.2e-07 60.1 93 39.8
THA.LOC104820608 Tarenaya hassleriana HOM05D005059 ORTHO05D004248 1.2e-07 60.1 49 63.3
AL1G43080 Arabidopsis lyrata HOM05D005059 ORTHO05D004248 1.6e-07 59.7 91 38.5
BcaC05g26955 Brassica carinata HOM05D005059 ORTHO05D004248 1.6e-07 59.7 91 38.5
A09p37060 Brassica napus HOM05D005059 ORTHO05D004248 1.6e-07 59.7 95 38.9
C05p28050 Brassica napus HOM05D005059 ORTHO05D004248 1.6e-07 59.7 91 38.5
BolC5t31533H Brassica oleracea HOM05D005059 ORTHO05D004248 1.6e-07 59.7 91 38.5
BraA09t39221Z Brassica rapa HOM05D005059 ORTHO05D004248 1.6e-07 59.7 95 38.9
Nitab4.5_0006663g0010 Nicotiana tabacum HOM05D005059 ORTHO05D004248 1.6e-07 59.7 88 43.2
Thecc.07G128300 Theobroma cacao HOM05D008890 ORTHO05D004248 2.1e-07 59.3 89 41.6
EL10Ac8g20558 Beta vulgaris HOM05D005059 ORTHO05D004248 3.5e-07 58.5 64 51.6
Medtr2g016800 Medicago truncatula HOM05D005059 ORTHO05D004248 3.5e-07 58.5 90 40.0
Thecc.07G128200 Theobroma cacao HOM05D008890 ORTHO05D004248 3.5e-07 58.5 82 43.9
Lalb_Chr13g0295291 Lupinus albus HOM05D005059 ORTHO05D004248 4.6e-07 58.2 71 49.3
Sp1g25220 Schrenkiella parvula HOM05D005059 ORTHO05D004248 6.0e-07 57.8 91 37.4
BcaB03g12151 Brassica carinata HOM05D005059 ORTHO05D004248 7.9e-07 57.4 94 38.3
BcaB07g32517 Brassica carinata HOM05D005059 ORTHO05D004248 1.0e-06 57.0 95 38.9
Duzib213G0742 Durio zibethinus HOM05D008890 ORTHO05D004248 1.0e-06 57.0 86 44.2
Thhalv10009585m.g Eutrema salsugineum HOM05D005059 ORTHO05D004248 1.0e-06 57.0 94 38.3
Gohir.A01G050000 Gossypium hirsutum HOM05D008890 ORTHO05D004248 1.3e-06 56.6 91 44.0
Ah.14g086980 Amaranthus hybridus HOM05D005059 ORTHO05D004248 2.3e-06 55.8 58 53.4
MSTRG.7430 Avicennia marina HOM05D005059 ORTHO05D004248 2.3e-06 55.8 85 42.4
ClCG01G023900 Citrullus lanatus HOM05D005059 ORTHO05D004248 2.3e-06 55.8 79 46.8
Gohir.D01G040300 Gossypium hirsutum HOM05D008890 ORTHO05D004248 2.3e-06 55.8 91 44.0
Gorai.002G050000 Gossypium raimondii HOM05D008890 ORTHO05D004248 2.3e-06 55.8 91 44.0
BcaC06g35423 Brassica carinata HOM05D005059 ORTHO05D004248 3.0e-06 55.5 94 39.4
C07p16340 Brassica napus HOM05D005059 ORTHO05D004248 3.0e-06 55.5 94 39.4
BolC7t42128H Brassica oleracea HOM05D005059 ORTHO05D004248 3.0e-06 55.5 94 39.4
Duzib213G0473 Durio zibethinus HOM05D008890 ORTHO05D004248 3.9e-06 55.1 86 43.0
Gohir.D01G040250 Gossypium hirsutum HOM05D008890 ORTHO05D004248 6.7e-06 54.3 89 44.9
Gohir.D01G040100 Gossypium hirsutum HOM05D008890 ORTHO05D004248 8.7e-06 53.9 87 49.4
Gorai.002G049700 Gossypium raimondii HOM05D008890 ORTHO05D004248 8.7e-06 53.9 87 49.4


User provided reference genes

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