Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr10.1476 Acer truncatum HOM05D006968 ORTHO05D008748 3.8e-117 424.9 215 100.0
Cfa001060 Carpinus fangiana HOM05D006968 ORTHO05D008748 2.0e-65 253.1 219 61.2
Ciclev10016662m.g Citrus clementina HOM05D006968 ORTHO05D008748 8.3e-64 247.7 214 64.0
Potri.011G076600 Populus trichocarpa HOM05D006968 ORTHO05D008748 1.6e-62 243.4 198 65.7
Haze_05452 Corylus avellana HOM05D006968 ORTHO05D008748 3.8e-61 238.8 205 60.5
Sabra11G0063700 Salix brachista HOM05D006968 ORTHO05D008748 6.6e-61 238.0 196 64.3
CSS0042403 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 8.6e-61 237.7 200 62.0
CANSAT35G0299 Cannabis sativa HOM05D006968 ORTHO05D008748 1.1e-60 237.3 206 60.2
CSS0021911 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 5.6e-60 235.0 191 63.9
Cpa.g.sc51.7 Carica papaya HOM05D006968 ORTHO05D008748 5.6e-60 235.0 212 57.1
CiPaw.09G132600 Carya illinoinensis HOM05D006968 ORTHO05D008748 9.5e-60 234.2 209 59.8
Rhsim02G0123400 Rhododendron simsii HOM05D006968 ORTHO05D008748 9.5e-60 234.2 206 61.2
QL05p052638 Quercus lobata HOM05D006968 ORTHO05D008748 1.2e-59 233.8 196 59.2
RcHm_v2.0_Chr5g0012541 Rosa chinensis HOM05D006968 ORTHO05D008748 4.7e-59 231.9 212 57.1
TWI73G0998 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 8.0e-59 231.1 193 60.1
Dinv32313 Davidia involucrata HOM05D006968 ORTHO05D008748 1.0e-58 230.7 186 60.2
COL.COLO4_22824 Corchorus olitorius HOM05D006968 ORTHO05D008748 2.0e-57 226.5 218 56.0
Manes.17G062400 Manihot esculenta HOM05D006968 ORTHO05D008748 3.4e-57 225.7 219 56.2
Duzib192G0634 Durio zibethinus HOM05D006968 ORTHO05D008748 9.8e-57 224.2 211 56.9
FAN16G1632 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.3e-56 223.8 212 55.7
FvH4_3g06600 Fragaria vesca HOM05D006968 ORTHO05D008748 1.7e-56 223.4 212 55.7
FAN25G0438 Fragaria x ananassa HOM05D006968 ORTHO05D008748 6.4e-56 221.5 212 55.2
Lj2A313T77 Lonicera japonica HOM05D006968 ORTHO05D008748 1.8e-55 219.9 212 55.7
CsaV3_1G032900 Cucumis sativus L. HOM05D006968 ORTHO05D008748 4.1e-55 218.8 197 56.9
MD10G1270500 Malus domestica HOM05D006968 ORTHO05D008748 4.1e-55 218.8 206 57.8
FAN11G1072 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.6e-54 216.9 215 54.4
Thecc.06G160300 Theobroma cacao HOM05D006968 ORTHO05D008748 1.6e-54 216.9 211 55.9
MELO3C002693.2 Cucumis melo HOM05D006968 ORTHO05D008748 3.5e-54 215.7 200 57.5
Prupe.4G071300 Prunus persica HOM05D006968 ORTHO05D008748 4.6e-54 215.3 209 57.4
TAR627G0978 Trochodendron aralioides HOM05D006968 ORTHO05D008748 5.9e-54 214.9 179 61.5
QL05p052648 Quercus lobata HOM05D006968 ORTHO05D008748 6.6e-53 211.5 183 59.0
Eucgr.E02869 Eucalyptus grandis HOM05D006968 ORTHO05D008748 8.6e-53 211.1 192 56.8
Hund21573 Selenicereus undatus HOM05D006968 ORTHO05D008748 1.9e-52 209.9 208 52.9
Gorai.009G159100 Gossypium raimondii HOM05D006968 ORTHO05D008748 9.5e-52 207.6 202 55.0
Lsat_1_v5_gn_0_21300 Lactuca sativa HOM05D006968 ORTHO05D008748 1.2e-51 207.2 212 54.7
Sed0009046 Sechium edule HOM05D006968 ORTHO05D008748 1.6e-51 206.8 203 54.7
Gohir.A05G152300 Gossypium hirsutum HOM05D006968 ORTHO05D008748 3.6e-51 205.7 202 54.5
Gohir.D05G154800 Gossypium hirsutum HOM05D006968 ORTHO05D008748 3.6e-51 205.7 202 54.5
DCAR_007922 Daucus carota HOM05D000065 ORTHO05D000162 6.2e-51 204.9 199 56.3
THA.LOC104798448 Tarenaya hassleriana HOM05D006968 ORTHO05D008748 6.2e-51 204.9 217 51.2
ClCG03G007290 Citrullus lanatus HOM05D006968 ORTHO05D008748 8.0e-51 204.5 189 56.6
Nitab4.5_0003913g0060 Nicotiana tabacum HOM05D006968 ORTHO05D008748 1.0e-50 204.1 208 50.5
Nitab4.5_0010884g0010 Nicotiana tabacum HOM05D006968 ORTHO05D008748 2.3e-50 203.0 208 50.5
MD00G1093500 Malus domestica HOM05D006968 ORTHO05D008748 3.1e-50 202.6 206 55.8
MSTRG.16189 Avicennia marina HOM05D006968 ORTHO05D008748 4.0e-50 202.2 202 53.5
HanXRQChr02g0055391 Helianthus annuus HOM05D006968 ORTHO05D008748 4.0e-50 202.2 204 52.5
SGA_v2.0_scaffold1G00109 Striga asiatica HOM05D006968 ORTHO05D008748 4.0e-50 202.2 206 51.5
Nn3g20980 Nelumbo nucifera HOM05D006968 ORTHO05D008748 8.9e-50 201.1 205 54.1
PGR042G2565 Punica granatum HOM05D006968 ORTHO05D008748 1.2e-49 200.7 186 56.5
SalBow8G1131 Salvia bowleyana HOM05D006968 ORTHO05D008748 9.8e-49 197.6 203 51.7
CAN.G257.117 Capsicum annuum HOM05D006968 ORTHO05D008748 2.2e-48 196.4 204 50.5
Oeu042433.1 Olea europaea HOM05D006968 ORTHO05D008748 2.2e-48 196.4 208 50.0
EL10Ac8g19830 Beta vulgaris HOM05D006968 ORTHO05D008748 2.9e-48 196.1 205 52.2
SalBow8G0548 Salvia bowleyana HOM05D006968 ORTHO05D008748 2.9e-48 196.1 203 51.2
Aqoxy1G01892 Aquilegia oxysepala HOM05D006968 ORTHO05D008748 4.9e-48 195.3 210 53.3
Solyc02g071600.4 Solanum lycopersicum HOM05D006968 ORTHO05D008748 1.4e-47 193.7 203 48.3
arahy.Tifrunner.gnm1.ann1.9V28L0 Arachis hypogaea HOM05D006968 ORTHO05D008748 2.4e-47 193.0 202 54.5
arahy.Tifrunner.gnm1.ann1.5H3RNB Arachis hypogaea HOM05D006968 ORTHO05D008748 7.0e-47 191.4 202 54.0
Aa31LG9G7390 Aethionema arabicum HOM05D006968 ORTHO05D008748 1.6e-46 190.3 211 46.9
HanXRQChr02g0055401 Helianthus annuus HOM05D006968 ORTHO05D008748 2.0e-46 189.9 219 48.9
CiPaw.09G132700 Carya illinoinensis HOM05D006968 ORTHO05D008748 2.7e-46 189.5 278 42.1
A06p46470 Brassica napus HOM05D006968 ORTHO05D008748 4.6e-46 188.7 213 49.3
Sopen02g020620 Solanum pennellii HOM05D006968 ORTHO05D008748 4.6e-46 188.7 204 48.0
BcaC06g31531 Brassica carinata HOM05D006968 ORTHO05D008748 6.0e-46 188.3 215 49.3
BolC7t43414H Brassica oleracea HOM05D006968 ORTHO05D008748 6.0e-46 188.3 214 49.5
Carub.0008s0235 Capsella rubella HOM05D006968 ORTHO05D008748 7.8e-46 188.0 225 49.3
Ah.02g125570 Amaranthus hybridus HOM05D006968 ORTHO05D008748 1.0e-45 187.6 209 47.4
BcaC06g34413 Brassica carinata HOM05D006968 ORTHO05D008748 2.3e-45 186.4 214 49.1
C07p28780 Brassica napus HOM05D006968 ORTHO05D008748 2.3e-45 186.4 214 49.1
AT5G45660 Arabidopsis thaliana HOM05D006968 ORTHO05D008748 5.0e-45 185.3 214 49.5
Sp2g10550 Schrenkiella parvula HOM05D006968 ORTHO05D008748 6.6e-45 184.9 189 52.4
AL8G12990 Arabidopsis lyrata HOM05D006968 ORTHO05D008748 8.6e-45 184.5 214 49.5
BraA06t27520Z Brassica rapa HOM05D006968 ORTHO05D008748 1.9e-44 183.3 216 48.6
Thhalv10001012m.g Eutrema salsugineum HOM05D006968 ORTHO05D008748 2.5e-44 183.0 213 48.8
Glyma.13G222900 Glycine max HOM05D006968 ORTHO05D008748 7.3e-44 181.4 197 50.3
Medtr2g018105 Medicago truncatula HOM05D006968 ORTHO05D008748 7.3e-44 181.4 213 47.9
VMungo0540G1786 Vigna mungo HOM05D006968 ORTHO05D008748 9.5e-44 181.0 212 46.7
TPR.G4467 Trifolium pratense HOM05D006968 ORTHO05D008748 1.2e-43 180.6 203 49.8
Cc02_g16200 Coffea canephora HOM05D006968 ORTHO05D008748 1.6e-43 180.3 202 49.5
Sc05g0006720 Simmondsia chinensis HOM05D000065 ORTHO05D000162 1.6e-43 180.3 187 52.4
Phvul.006G168900 Phaseolus vulgaris HOM05D006968 ORTHO05D008748 2.1e-43 179.9 199 49.2
CARHR176320 Cardamine hirsuta HOM05D006968 ORTHO05D008748 2.8e-43 179.5 214 48.1
PSO675G0867 Papaver somniferum HOM05D006968 ORTHO05D008748 2.8e-43 179.5 205 47.3
PGSC0003DMG400007245 Solanum tuberosum HOM05D006968 ORTHO05D008748 4.7e-43 178.7 204 47.1
unitig_748.g7643 Utricularia gibba HOM05D001519 ORTHO05D008748 6.2e-43 178.3 203 48.8
Psat1g192720 Pisum sativum HOM05D006968 ORTHO05D008748 1.4e-42 177.2 192 49.0
PSO541G0278 Papaver somniferum HOM05D006968 ORTHO05D008748 1.8e-42 176.8 205 47.8
Lj6g0008479 Lotus japonicus HOM05D006968 ORTHO05D008748 6.8e-42 174.9 205 45.4
AUR62027636 Chenopodium quinoa HOM05D006968 ORTHO05D008748 3.4e-41 172.6 209 46.9
Ca_00496_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 9.8e-41 171.0 203 47.3
Ca_30235_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 9.8e-41 171.0 203 47.3
CDE10G0144 Ceratophyllum demersum HOM05D000065 ORTHO05D008748 2.2e-40 169.9 187 52.4
FAN12G2652 Fragaria x ananassa HOM05D006968 ORTHO05D008748 2.9e-40 169.5 180 52.8
FvH4_4g34020 Fragaria vesca HOM05D006968 ORTHO05D008748 1.2e-38 164.1 180 51.7
Actinidia07663 Actinidia chinensis HOM05D006968 ORTHO05D008748 2.7e-38 162.9 119 68.1
Lalb_Chr18g0055011 Lupinus albus HOM05D006968 ORTHO05D008748 2.7e-38 162.9 205 48.3
FAN22G0056 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.7e-37 160.2 232 42.2
Actinidia39540 Actinidia chinensis HOM05D006968 ORTHO05D008748 6.8e-34 148.3 160 54.4
AUR62035842 Chenopodium quinoa HOM05D006968 ORTHO05D008748 4.4e-33 145.6 121 57.9
Migut.M00982 Erythranthe guttata HOM05D006968 ORTHO05D008748 7.8e-30 134.8 149 49.0
SEGI_37019 Sequoiadendron giganteum HOM05D006968 ORTHO05D008748 1.3e-29 134.0 215 34.0
HPP92_009092 Vanilla planifolia HOM05D006968 ORTHO05D008748 1.7e-29 133.7 184 39.1
SGA_v2.0_scaffold273G46455 Striga asiatica HOM05D006968 ORTHO05D008748 4.3e-28 129.0 121 52.9
ECA248G0802 Erigeron canadensis HOM05D006968 ORTHO05D008748 4.0e-26 122.5 102 57.8
SGA_v2.0_scaffold18G08383 Striga asiatica HOM05D006968 ORTHO05D008748 4.4e-25 119.0 106 54.7
Zm00001eb154290 Zea mays HOM05D006968 ORTHO05D008748 2.9e-24 116.3 198 40.4
Os01g0727900 Oryza sativa ssp. japonica HOM05D006968 ORTHO05D008748 1.6e-22 110.5 173 40.5
GSVIVG01021311001 Vitis vinifera HOM05D006968 ORTHO05D008748 1.3e-21 107.5 96 59.4
Lalb_Chr18g0055041 Lupinus albus HOM05D006968 ORTHO05D008748 3.0e-21 106.3 210 36.7
Zm00001eb045900 Zea mays HOM05D006968 ORTHO05D008748 5.1e-21 105.5 199 39.2
Lsat_1_v5_gn_1_112261 Lactuca sativa HOM05D006968 ORTHO05D008748 3.3e-20 102.8 82 59.8
ATR0737G097 Amborella trichopoda HOM05D006968 ORTHO05D008748 6.2e-19 98.6 152 36.2
Pp3c13_11400 Physcomitrium patens HOM05D006968 ORTHO05D008748 1.1e-18 97.8 176 32.4
ECA248G3047 Erigeron canadensis HOM05D006968 ORTHO05D008748 9.3e-15 84.7 129 40.3
TWI53G1777 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 5.1e-13 79.0 107 45.8
Haze_05450 Corylus avellana HOM05D006968 ORTHO05D164033 2.1e-11 73.6 56 62.5
GSVIVG01021310001 Vitis vinifera HOM05D006968 ORTHO05D008748 4.8e-11 72.4 69 58.0
SGA_v2.0_scaffold305G47958 Striga asiatica HOM05D000046 ORTHO05D405780 5.3e-10 68.9 54 59.3
SGA_v2.0_scaffold36G14429 Striga asiatica HOM05D003154 ORTHO05D003565 1.7e-08 63.9 52 55.8


User provided reference genes

Program Settings