Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr10.1272 Acer truncatum HOM05D005716 ORTHO05D007885 1.8e-156 555.8 271 100.0
QL05p058825 Quercus lobata HOM05D005716 ORTHO05D007885 1.8e-140 502.7 254 95.3
QL05p058849 Quercus lobata HOM05D005716 ORTHO05D007885 5.2e-140 501.1 254 94.9
CiPaw.09G125500 Carya illinoinensis HOM05D005716 ORTHO05D007885 6.4e-138 494.2 257 92.2
Lj1A1186G50 Lonicera japonica HOM05D005716 ORTHO05D007885 8.4e-138 493.8 253 94.1
Ciclev10016173m.g Citrus clementina HOM05D005716 ORTHO05D007885 1.1e-137 493.4 257 91.1
TAR627G0480 Trochodendron aralioides HOM05D005716 ORTHO05D007885 1.4e-137 493.0 255 92.2
MD10G1263700 Malus domestica HOM05D005716 ORTHO05D007885 2.4e-137 492.3 253 94.1
Aqoxy4G00105 Aquilegia oxysepala HOM05D005716 ORTHO05D007885 4.1e-137 491.5 257 91.8
Prupe.4G079000 Prunus persica HOM05D005716 ORTHO05D007885 5.4e-137 491.1 255 92.9
Nitab4.5_0005219g0060 Nicotiana tabacum HOM05D005716 ORTHO05D007885 9.2e-137 490.3 254 92.9
RcHm_v2.0_Chr5g0013751 Rosa chinensis HOM05D005716 ORTHO05D007885 1.2e-136 490.0 256 93.0
Thhalv10017058m.g Eutrema salsugineum HOM05D005716 ORTHO05D007885 1.0e-135 486.9 257 91.4
MD05G1285700 Malus domestica HOM05D005716 ORTHO05D007885 1.0e-135 486.9 249 94.8
CAN.G650.23 Capsicum annuum HOM05D005716 ORTHO05D007885 3.0e-135 485.3 254 92.5
PGSC0003DMG400008287 Solanum tuberosum HOM05D005716 ORTHO05D007885 3.0e-135 485.3 254 92.1
Manes.17G068800 Manihot esculenta HOM05D005716 ORTHO05D007885 5.1e-135 484.6 251 91.6
C04p63810 Brassica napus HOM05D005716 ORTHO05D007885 6.6e-135 484.2 255 91.0
BraA04t18144Z Brassica rapa HOM05D005716 ORTHO05D007885 6.6e-135 484.2 255 91.0
AL4G30440 Arabidopsis lyrata HOM05D005716 ORTHO05D007885 8.7e-135 483.8 257 91.1
EL10Ac8g19740 Beta vulgaris HOM05D005716 ORTHO05D007885 8.7e-135 483.8 255 90.6
BolC4t27848H Brassica oleracea HOM05D005716 ORTHO05D007885 8.7e-135 483.8 252 91.7
Eucgr.E02383 Eucalyptus grandis HOM05D005716 ORTHO05D007885 8.7e-135 483.8 253 90.9
TWI09G1196 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 8.7e-135 483.8 251 92.4
Eucgr.E02408 Eucalyptus grandis HOM05D005716 ORTHO05D007885 1.1e-134 483.4 253 90.9
Aa31LG10G6910 Aethionema arabicum HOM05D005716 ORTHO05D007885 1.5e-134 483.0 257 91.4
Peaxi162Scf00022g00310 Petunia axillaris HOM05D005716 ORTHO05D007885 1.5e-134 483.0 254 91.3
Sabra02G0185400 Salix brachista HOM05D005716 ORTHO05D007885 1.5e-134 483.0 251 91.6
ECA232G4567 Erigeron canadensis HOM05D005716 ORTHO05D007885 1.9e-134 482.6 254 90.9
AT2G34470 Arabidopsis thaliana HOM05D005716 ORTHO05D007885 2.5e-134 482.3 257 90.7
CARHR128550 Cardamine hirsuta HOM05D005716 ORTHO05D007885 2.5e-134 482.3 257 90.7
FvH4_3g05780 Fragaria vesca HOM05D005716 ORTHO05D007885 2.5e-134 482.3 256 91.4
FAN11G1575 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.5e-134 482.3 256 91.4
FAN21G0047 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.5e-134 482.3 256 91.4
Sopen02g019750 Solanum pennellii HOM05D005716 ORTHO05D007885 2.5e-134 482.3 254 91.7
Nn3g20701 Nelumbo nucifera HOM05D005716 ORTHO05D007885 3.3e-134 481.9 253 90.5
Rhsim07G0173200 Rhododendron simsii HOM05D005716 ORTHO05D007885 3.3e-134 481.9 263 89.0
GSVIVG01021429001 Vitis vinifera HOM05D005716 ORTHO05D007885 3.3e-134 481.9 256 89.1
BcaB06g28772 Brassica carinata HOM05D005716 ORTHO05D007885 5.6e-134 481.1 255 90.6
Solyc02g070670.4 Solanum lycopersicum HOM05D005716 ORTHO05D007885 5.6e-134 481.1 254 91.3
Duzib235G0716 Durio zibethinus HOM05D005716 ORTHO05D007885 7.3e-134 480.7 249 92.4
Potri.002G243500 Populus trichocarpa HOM05D005716 ORTHO05D007885 7.3e-134 480.7 254 90.6
Potri.002G243700 Populus trichocarpa HOM05D005716 ORTHO05D007885 7.3e-134 480.7 254 90.6
PGR042G3684 Punica granatum HOM05D005716 ORTHO05D007885 9.6e-134 480.3 254 90.2
FAN16G2159 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.2e-133 479.9 256 91.0
CsaV3_1G032590 Cucumis sativus L. HOM05D005716 ORTHO05D007885 1.6e-133 479.6 252 90.9
Cc09_g09370 Coffea canephora HOM05D005716 ORTHO05D007885 2.1e-133 479.2 256 89.8
Sp4g16740 Schrenkiella parvula HOM05D005716 ORTHO05D007885 2.8e-133 478.8 255 91.0
THA.LOC104812667 Tarenaya hassleriana HOM05D005716 ORTHO05D007885 3.6e-133 478.4 252 90.9
Thecc.06G152400 Theobroma cacao HOM05D005716 ORTHO05D007885 3.6e-133 478.4 249 92.0
arahy.Tifrunner.gnm1.ann1.MD42KV Arachis hypogaea HOM05D005716 ORTHO05D007885 6.2e-133 477.6 254 90.2
Carub.0004s1614 Capsella rubella HOM05D005716 ORTHO05D007885 6.2e-133 477.6 255 91.0
Dinv32271 Davidia involucrata HOM05D005716 ORTHO05D007885 6.2e-133 477.6 257 91.4
Oeu030916.2 Olea europaea HOM05D005716 ORTHO05D007885 8.1e-133 477.2 273 86.1
CANSAT80G0786 Cannabis sativa HOM05D005716 ORTHO05D007885 1.8e-132 476.1 249 91.6
DCAR_005122 Daucus carota HOM05D005716 ORTHO05D007885 1.8e-132 476.1 257 89.9
MBI07_g26370_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 1.8e-132 476.1 257 89.9
Lsat_1_v5_gn_1_96721 Lactuca sativa HOM05D005716 ORTHO05D007885 2.4e-132 475.7 257 90.3
Actinidia07685 Actinidia chinensis HOM05D005716 ORTHO05D007885 3.1e-132 475.3 255 91.0
arahy.Tifrunner.gnm1.ann1.16PV68 Arachis hypogaea HOM05D005716 ORTHO05D007885 3.1e-132 475.3 253 90.1
Lalb_Chr07g0188621 Lupinus albus HOM05D005716 ORTHO05D007885 3.1e-132 475.3 249 92.0
Phvul.002G193800 Phaseolus vulgaris HOM05D005716 ORTHO05D007885 3.1e-132 475.3 251 91.2
CDE02G4127 Ceratophyllum demersum HOM05D005716 ORTHO05D007885 4.0e-132 474.9 255 88.6
HanXRQChr08g0230021 Helianthus annuus HOM05D005716 ORTHO05D007885 4.0e-132 474.9 254 90.6
MBI07_g15285_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 4.0e-132 474.9 257 89.5
SGA_v2.0_scaffold106G30642 Striga asiatica HOM05D005716 ORTHO05D007885 4.0e-132 474.9 250 90.0
AUR62027525 Chenopodium quinoa HOM05D005716 ORTHO05D007885 5.2e-132 474.6 244 93.9
Glyma.08G084800 Glycine max HOM05D005716 ORTHO05D007885 5.2e-132 474.6 251 90.8
Gohir.D10G040400 Gossypium hirsutum HOM05D005716 ORTHO05D007885 5.2e-132 474.6 251 91.6
MSTRG.13250 Avicennia marina HOM05D005716 ORTHO05D007885 9.0e-132 473.8 250 89.6
Ca_18267_v3 Cicer arietinum L. HOM05D005716 ORTHO05D007885 1.2e-131 473.4 255 88.6
Gorai.011G042600 Gossypium raimondii HOM05D005716 ORTHO05D007885 1.2e-131 473.4 251 91.2
Migut.H01369 Erythranthe guttata HOM05D005716 ORTHO05D007885 1.5e-131 473.0 250 90.8
VMungo0251G2847 Vigna mungo HOM05D005716 ORTHO05D007885 2.0e-131 472.6 256 89.8
SalBow7G1512 Salvia bowleyana HOM05D005716 ORTHO05D007885 2.6e-131 472.2 250 90.0
Medtr4g096770 Medicago truncatula HOM05D005716 ORTHO05D007885 4.4e-131 471.5 249 90.8
TPR.G4903 Trifolium pratense HOM05D005716 ORTHO05D007885 5.8e-131 471.1 249 90.8
unitig_32.g11441 Utricularia gibba HOM05D005716 ORTHO05D007885 7.6e-131 470.7 248 90.3
Sc05g0006370 Simmondsia chinensis HOM05D005716 ORTHO05D007885 4.9e-130 468.0 252 89.3
TWI09G0986 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 8.4e-130 467.2 245 91.8
COL.COLO4_31094 Corchorus olitorius HOM05D005716 ORTHO05D007885 1.9e-129 466.1 247 89.9
PSO017G0333 Papaver somniferum HOM05D005716 ORTHO05D007885 2.4e-129 465.7 246 91.5
Psat7g090160 Pisum sativum HOM05D005716 ORTHO05D007885 4.2e-129 464.9 247 89.9
TWI53G0431 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 7.1e-129 464.2 247 90.3
ATR0585G042 Amborella trichopoda HOM05D005716 ORTHO05D007885 1.2e-128 463.4 247 89.9
SEGI_04817 Sequoiadendron giganteum HOM05D005716 ORTHO05D007885 1.6e-128 463.0 249 89.2
Sed0010647 Sechium edule HOM05D005716 ORTHO05D007885 8.7e-127 457.2 249 88.4
HPP92_010050 Vanilla planifolia HOM05D005716 ORTHO05D007885 4.3e-126 454.9 249 85.9
PSO478G1410 Papaver somniferum HOM05D005716 ORTHO05D007885 3.4e-123 445.3 248 87.9
Mapoly0128s0016 Marchantia polymorpha HOM05D005716 ORTHO05D007885 6.4e-122 441.0 253 83.8
Cpa.g.sc166.24 Carica papaya HOM05D005716 ORTHO05D007885 1.4e-121 439.9 266 82.3
vmacro17882 Vaccinium macrocarpon HOM05D005716 ORTHO05D007885 3.2e-121 438.7 356 66.3
Os05g0565200 Oryza sativa ssp. japonica HOM05D005716 ORTHO05D007885 4.2e-121 438.3 257 84.0
SMO353G0068 Selaginella moellendorffii HOM05D005716 ORTHO05D007885 2.7e-120 435.6 255 83.1
MELO3C002721.2 Cucumis melo HOM05D005716 ORTHO05D007885 7.9e-120 434.1 225 92.4
Zm00001eb343840 Zea mays HOM05D005716 ORTHO05D007885 7.4e-118 427.6 228 90.8
Pp3c24_19130 Physcomitrium patens HOM05D005716 ORTHO05D007885 1.6e-117 426.4 247 83.0
ClCG03G007040 Citrullus lanatus HOM05D005716 ORTHO05D007885 8.1e-117 424.1 249 83.1
AagrBONN_evm.TU.Sc2ySwM_117.3588 Anthoceros agrestis HOM05D005716 ORTHO05D007885 2.2e-114 416.0 242 83.1
CBR_g38955 Chara braunii HOM05D005716 ORTHO05D007885 2.5e-110 402.5 246 78.0
CSS0037137 Camellia sinensis var. sinensis HOM05D005716 ORTHO05D007885 2.1e-109 399.4 224 87.5
Haze_05577 Corylus avellana HOM05D005716 ORTHO05D007885 1.0e-98 364.0 191 93.2
Hma1.2p1_0286F.1_g114150 Hydrangea macrophylla HOM05D005716 ORTHO05D007885 8.5e-98 360.9 190 92.6
MCO04G141 Micromonas commoda HOM05D005716 ORTHO05D007885 5.7e-94 348.2 255 66.7
RcHm_v2.0_Chr5g0013741 Rosa chinensis HOM05D005716 ORTHO05D007885 5.5e-89 331.6 171 93.6
Nitab4.5_0001655g0090 Nicotiana tabacum HOM05D005716 ORTHO05D007885 9.4e-89 330.9 171 94.2
PSO017G6742 Papaver somniferum HOM05D005716 ORTHO05D007885 2.2e-85 319.7 168 93.5
Hund21524 Selenicereus undatus HOM05D005716 ORTHO05D007885 2.2e-85 319.7 181 87.8
Gohir.A10G039600 Gossypium hirsutum HOM05D005716 ORTHO05D007885 4.5e-83 312.0 165 89.7
A04p06350 Brassica napus HOM05D005716 ORTHO05D007885 3.8e-82 308.9 183 84.7
PRCOL_00002216 Prasinoderma coloniale HOM05D005716 ORTHO05D007885 1.8e-76 290.0 185 75.7
FAN17G1884 Fragaria x ananassa HOM05D005716 ORTHO05D007885 5.9e-75 285.0 164 86.0
FAN23G0273 Fragaria x ananassa HOM05D005716 ORTHO05D007885 6.5e-74 281.6 164 83.5
FAN25G2810 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.9e-73 280.0 164 84.8
BcaC02g09191 Brassica carinata HOM05D005716 ORTHO05D031863 2.5e-73 279.6 145 95.2
C04p39880 Brassica napus HOM05D005716 ORTHO05D007885 2.0e-70 270.0 147 91.8
FAN25G0382 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.0e-70 270.0 178 77.0
BolC4t25559H Brassica oleracea HOM05D005716 ORTHO05D007885 1.3e-69 267.3 155 87.7
BraA04t16339Z Brassica rapa HOM05D005716 ORTHO05D007885 1.8e-68 263.5 155 86.5
FAN02G1132 Fragaria x ananassa HOM05D005716 ORTHO05D007885 3.1e-68 262.7 213 66.2
AUR62030221 Chenopodium quinoa HOM05D005716 ORTHO05D007885 7.0e-68 261.5 142 88.0
RcHm_v2.0_Chr5g0013721 Rosa chinensis HOM05D005716 ORTHO05D007885 8.5e-66 254.6 158 79.7
RcHm_v2.0_Chr5g0013731 Rosa chinensis HOM05D005716 ORTHO05D007885 2.8e-61 239.6 158 77.2
Dinv30725 Davidia involucrata HOM05D005716 ORTHO05D007885 1.4e-52 210.7 141 75.9
FAN02G0019 Fragaria x ananassa HOM05D005716 ORTHO05D007885 4.1e-52 209.1 151 71.5
Haze_26810 Corylus avellana HOM05D005716 ORTHO05D164461 1.2e-51 207.6 185 56.8
AUR62030223 Chenopodium quinoa HOM05D005716 ORTHO05D044022 3.3e-41 172.9 167 58.7
MSTRG.14769 Avicennia marina HOM05D005716 ORTHO05D007885 4.3e-41 172.6 93 88.2
FAN08G0336 Fragaria x ananassa HOM05D005716 ORTHO05D044022 1.8e-31 140.6 76 90.8
Dinv30726 Davidia involucrata HOM05D005716 ORTHO05D014961 1.1e-28 131.3 66 84.8
arahy.Tifrunner.gnm1.ann1.8LN2Z6 Arachis hypogaea HOM05D005716 ORTHO05D087704 5.4e-28 129.0 194 44.8
VMungo1309G0118 Vigna mungo HOM05D005716 ORTHO05D437644 6.0e-27 125.6 71 84.5
CAN.G94.3 Capsicum annuum HOM05D005716 ORTHO05D115662 9.5e-25 118.2 93 64.5
C05p14270 Brassica napus HOM05D013073 ORTHO05D014961 2.7e-19 100.1 55 81.8
C06p00300 Brassica napus HOM05D013073 ORTHO05D014961 7.8e-19 98.6 55 80.0
BcaC08g42818 Brassica carinata HOM05D013073 ORTHO05D014961 4.7e-16 89.4 50 80.0
A04p26400 Brassica napus HOM05D005716 ORTHO05D099386 3.1e-15 86.7 46 84.8
C09p15390 Brassica napus HOM05D013073 ORTHO05D014961 6.9e-07 58.9 84 41.7
Sed0013878 Sechium edule HOM05D030426 ORTHO05D029164 3.4e-06 56.6 29 86.2


User provided reference genes

Program Settings