Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr10.1100 Acer truncatum HOM05D007057 ORTHO05D008878 1.0e-182 644.4 721 100.0
Manes.08G104600 Manihot esculenta HOM05D007057 ORTHO05D008878 8.3e-100 369.0 733 79.0
Cfa006273 Carpinus fangiana HOM05D007057 ORTHO05D008878 9.2e-91 339.0 733 70.4
Duzib128G1528 Durio zibethinus HOM05D007057 ORTHO05D008878 2.8e-87 327.4 737 74.5
Potri.013G087200 Populus trichocarpa HOM05D007057 ORTHO05D008878 3.0e-86 323.9 711 77.1
QL01p045590 Quercus lobata HOM05D007057 ORTHO05D008878 4.0e-86 323.6 736 69.2
Thecc.05G201600 Theobroma cacao HOM05D007057 ORTHO05D008878 1.5e-85 321.6 737 74.8
Cpa.g.sc123.6 Carica papaya HOM05D007057 ORTHO05D008878 2.6e-85 320.9 718 76.7
GSVIVG01019130001 Vitis vinifera HOM05D007057 ORTHO05D008878 2.6e-85 320.9 703 74.0
ClCG03G010890 Citrullus lanatus HOM05D007057 ORTHO05D008878 1.7e-84 318.2 723 68.2
Haze_04538 Corylus avellana HOM05D007057 ORTHO05D008878 2.9e-84 317.4 733 68.8
CsaV3_1G044640 Cucumis sativus L. HOM05D007057 ORTHO05D008878 2.9e-84 317.4 729 71.1
Duzib177G0705 Durio zibethinus HOM05D007057 ORTHO05D008878 2.9e-84 317.4 737 72.9
MELO3C010073.2 Cucumis melo HOM05D007057 ORTHO05D008878 8.3e-84 315.8 731 70.6
Gohir.D04G026500 Gossypium hirsutum HOM05D007057 ORTHO05D008878 9.2e-83 312.4 715 77.3
Gohir.A05G390700 Gossypium hirsutum HOM05D007057 ORTHO05D008878 8.6e-81 305.8 715 76.8
FAN14G3263 Fragaria x ananassa HOM05D007057 ORTHO05D008878 1.0e-78 298.9 731 67.9
TWI18G1405 Tripterygium wilfordii HOM05D007057 ORTHO05D008878 4.0e-78 297.0 720 67.2
FAN09G2991 Fragaria x ananassa HOM05D007057 ORTHO05D008878 5.2e-78 296.6 717 68.1
Glyma.18G240800 Glycine max HOM05D007057 ORTHO05D008878 5.8e-77 293.1 709 69.0
CANSAT54G2802 Cannabis sativa HOM05D007057 ORTHO05D008878 1.7e-76 291.6 729 68.7
Glyma.09G251800 Glycine max HOM05D007057 ORTHO05D008878 1.7e-76 291.6 709 69.4
Medtr7g079550 Medicago truncatula HOM05D007057 ORTHO05D008878 2.2e-76 291.2 707 74.3
Lj1g0009704 Lotus japonicus HOM05D007057 ORTHO05D008878 4.9e-76 290.0 714 63.7
RcHm_v2.0_Chr3g0448121 Rosa chinensis HOM05D007057 ORTHO05D008878 5.4e-75 286.6 712 74.9
FAN02G0321 Fragaria x ananassa HOM05D007057 ORTHO05D008878 1.2e-74 285.4 731 64.8
FvH4_6g00680 Fragaria vesca HOM05D007057 ORTHO05D008878 3.5e-74 283.9 731 66.1
FAN05G1805 Fragaria x ananassa HOM05D007057 ORTHO05D008878 7.8e-74 282.7 712 65.4
Lalb_Chr19g0126731 Lupinus albus HOM05D007057 ORTHO05D008878 8.6e-73 279.3 713 71.5
VMungo1383G0494 Vigna mungo HOM05D007057 ORTHO05D008878 1.1e-72 278.9 710 68.5
TPR.G28458 Trifolium pratense HOM05D007057 ORTHO05D008878 1.5e-72 278.5 714 71.0
Gorai.012G029100 Gossypium raimondii HOM05D007057 ORTHO05D008878 2.1e-71 274.6 715 75.4
Dinv04346 Davidia involucrata HOM05D007057 ORTHO05D008878 3.1e-70 270.8 703 72.1
Eucgr.H01380 Eucalyptus grandis HOM05D007057 ORTHO05D008878 1.9e-67 261.5 715 69.5
Sed0005007 Sechium edule HOM05D007057 ORTHO05D008878 3.5e-66 257.3 734 68.8
Lalb_Chr03g0038391 Lupinus albus HOM05D007057 ORTHO05D008878 1.7e-65 255.0 711 69.5
THA.LOC104823816 Tarenaya hassleriana HOM05D007057 ORTHO05D008878 7.6e-61 239.6 704 69.6
Ca_07967_v3 Cicer arietinum L. HOM05D007057 ORTHO05D008878 1.3e-60 238.8 707 65.9
Psat3g104800 Pisum sativum HOM05D007057 ORTHO05D008878 3.8e-60 237.3 719 70.5
Rhsim03G0265600 Rhododendron simsii HOM05D007057 ORTHO05D008878 4.9e-60 236.9 743 68.1
Ciclev10013603m.g Citrus clementina HOM05D007057 ORTHO05D008878 1.4e-59 235.3 227 71.8
CiPaw.07G078900 Carya illinoinensis HOM05D007057 ORTHO05D008878 1.9e-59 235.0 608 74.0
Nitab4.5_0001857g0020 Nicotiana tabacum HOM05D007057 ORTHO05D008878 6.6e-57 226.5 694 71.8
Prupe.6G359800 Prunus persica HOM05D007057 ORTHO05D008878 2.8e-55 221.1 640 68.1
TAR362G1011 Trochodendron aralioides HOM05D007057 ORTHO05D008878 3.6e-55 220.7 694 68.4
Cc09_g03450 Coffea canephora HOM05D007057 ORTHO05D008878 9.9e-53 212.6 697 69.9
vmacro06001 Vaccinium macrocarpon HOM05D007057 ORTHO05D008878 2.9e-52 211.1 697 66.4
TWI75G1373 Tripterygium wilfordii HOM05D007057 ORTHO05D008878 5.4e-51 206.8 719 66.9
Nitab4.5_0000946g0060 Nicotiana tabacum HOM05D007057 ORTHO05D008878 7.1e-51 206.5 693 71.1
AUR62006672 Chenopodium quinoa HOM05D007057 ORTHO05D008878 9.3e-51 206.1 712 66.6
HanXRQChr01g0025821 Helianthus annuus HOM05D007057 ORTHO05D008878 6.0e-50 203.4 699 70.0
Lsat_1_v5_gn_1_58361 Lactuca sativa HOM05D007057 ORTHO05D008878 3.9e-49 200.7 705 71.6
PGR031G0541 Punica granatum HOM05D007057 ORTHO05D008878 1.1e-48 199.1 735 63.0
CARHR057050 Cardamine hirsuta HOM05D007057 ORTHO05D008878 3.3e-48 197.6 701 67.3
Ah.04g158850 Amaranthus hybridus HOM05D007057 ORTHO05D008878 7.3e-48 196.4 734 66.1
AL2G22040 Arabidopsis lyrata HOM05D007057 ORTHO05D008878 1.3e-47 195.7 702 67.7
Carub.0002s1110 Capsella rubella HOM05D007057 ORTHO05D008878 1.6e-47 195.3 705 70.2
C02p21340 Brassica napus HOM05D007057 ORTHO05D008878 2.1e-47 194.9 703 68.3
AT1G65380 Arabidopsis thaliana HOM05D007057 ORTHO05D008878 5.8e-45 186.8 693 68.7
Peaxi162Scf00006g00421 Petunia axillaris HOM05D007057 ORTHO05D008878 1.7e-44 185.3 696 65.9
Peaxi162Scf00976g00023 Petunia axillaris HOM05D007057 ORTHO05D008878 3.8e-44 184.1 696 66.2
CSS0046667 Camellia sinensis var. sinensis HOM05D007057 ORTHO05D008878 1.4e-43 182.2 227 63.0
Actinidia34764 Actinidia chinensis HOM05D007057 ORTHO05D008878 4.2e-43 180.6 672 66.5
EL10Ac4g09982 Beta vulgaris HOM05D007057 ORTHO05D008878 4.2e-43 180.6 699 68.8
AUR62000330 Chenopodium quinoa HOM05D007057 ORTHO05D008878 1.6e-42 178.7 712 62.9
Sp5g20120 Schrenkiella parvula HOM05D007057 ORTHO05D008878 2.1e-42 178.3 701 69.5
Nn4g26683 Nelumbo nucifera HOM05D007057 ORTHO05D008878 2.7e-42 177.9 724 68.6
Aa31LG2G2430 Aethionema arabicum HOM05D007057 ORTHO05D008878 1.8e-41 175.3 709 60.5
FAN27G3162 Fragaria x ananassa HOM05D007057 ORTHO05D008878 2.3e-41 174.9 223 56.1
MSTRG.8219 Avicennia marina HOM05D007057 ORTHO05D008878 3.0e-41 174.5 704 63.9
Thhalv10018195m.g Eutrema salsugineum HOM05D007057 ORTHO05D008878 8.7e-41 172.9 702 67.7
DCAR_001923 Daucus carota HOM05D007057 ORTHO05D008878 1.1e-40 172.6 691 61.4
Oeu010152.2 Olea europaea HOM05D007057 ORTHO05D008878 2.5e-40 171.4 716 63.0
CAN.G217.2 Capsicum annuum HOM05D007057 ORTHO05D008878 3.3e-40 171.0 702 64.1
A02p13180 Brassica napus HOM05D007057 ORTHO05D008878 4.3e-40 170.6 711 68.9
BcaC03g14695 Brassica carinata HOM05D007057 ORTHO05D008878 5.6e-40 170.2 703 68.1
BolC2t08271H Brassica oleracea HOM05D007057 ORTHO05D008878 5.6e-40 170.2 703 68.1
BraA02t06374Z Brassica rapa HOM05D007057 ORTHO05D008878 3.7e-39 167.5 711 68.9
BcaB05g24110 Brassica carinata HOM05D007057 ORTHO05D008878 3.1e-38 164.5 701 68.3
Sc16g0010320 Simmondsia chinensis HOM05D007057 ORTHO05D008878 4.0e-38 164.1 734 63.4
Solyc04g056640.1 Solanum lycopersicum HOM05D007057 ORTHO05D008878 5.3e-38 163.7 698 66.0
Sopen04g025560 Solanum pennellii HOM05D007057 ORTHO05D008878 6.9e-38 163.3 697 66.0
Migut.L01029 Erythranthe guttata HOM05D007057 ORTHO05D008878 3.4e-37 161.0 702 63.4
FAN28G1564 Fragaria x ananassa HOM05D007057 ORTHO05D008878 3.4e-37 161.0 212 55.7
HPP92_021394 Vanilla planifolia HOM05D007057 ORTHO05D008878 1.3e-36 159.1 697 60.3
MBI08_g39972_MAGBIO Magnolia biondii HOM05D007057 ORTHO05D008878 1.7e-36 158.7 717 66.4
Phvul.008G055400 Phaseolus vulgaris HOM05D007057 ORTHO05D008878 4.9e-36 157.1 374 55.3
Aqoxy2G03299 Aquilegia oxysepala HOM05D007057 ORTHO05D008878 1.4e-35 155.6 711 64.1
PGSC0003DMG400010523 Solanum tuberosum HOM05D007057 ORTHO05D008878 3.2e-35 154.5 225 57.8
PSO675G4505 Papaver somniferum HOM05D007057 ORTHO05D008878 2.7e-34 151.4 720 59.9
COL.COLO4_27405 Corchorus olitorius HOM05D007057 ORTHO05D008878 5.6e-32 143.7 361 78.9
ECA248G3256 Erigeron canadensis HOM05D007057 ORTHO05D008878 1.1e-30 139.4 693 66.1
SGA_v2.0_scaffold71G23872 Striga asiatica HOM05D007057 ORTHO05D008878 8.4e-28 129.8 700 63.9
CSS0040779 Camellia sinensis var. sinensis HOM05D007057 ORTHO05D008878 2.1e-26 125.2 402 71.4
CSS0018282 Camellia sinensis var. sinensis HOM05D007057 ORTHO05D008878 2.7e-26 124.8 204 57.8
CSS0040898 Camellia sinensis var. sinensis HOM05D007057 ORTHO05D008878 2.7e-26 124.8 204 57.8
PSO017G0140 Papaver somniferum HOM05D007057 ORTHO05D008878 1.5e-24 119.0 222 51.8
SalBow6G0986 Salvia bowleyana HOM05D007057 ORTHO05D008878 2.2e-20 105.1 223 39.5
BcaC03g14701 Brassica carinata HOM05D007057 ORTHO05D008878 1.5e-13 82.4 105 57.1
BcaB05g24109 Brassica carinata HOM05D007057 ORTHO05D008878 3.8e-12 77.8 105 63.8
ATR0824G263 Amborella trichopoda HOM05D007057 ORTHO05D008878 1.4e-11 75.9 185 49.2
BcaC03g14699 Brassica carinata HOM05D007057 ORTHO05D008878 2.1e-10 72.0 101 52.5
Os02g0603100 Oryza sativa ssp. japonica HOM05D007057 ORTHO05D008878 6.1e-10 70.5 228 42.5
AUR62000327 Chenopodium quinoa HOM05D007057 ORTHO05D008878 3.3e-08 64.7 85 43.5
Zm00001eb184050 Zea mays HOM05D007057 ORTHO05D008878 4.4e-08 64.3 227 41.9
BcaC03g14697 Brassica carinata HOM05D007057 ORTHO05D008878 1.3e-07 62.8 91 49.5
Eucgr.I00372 Eucalyptus grandis HOM05D000071 ORTHO05D000029 1.3e-07 62.8 85 36.5
ECA238G2550 Erigeron canadensis HOM05D000071 ORTHO05D000029 1.7e-07 62.4 104 35.6
Eucgr.G00748 Eucalyptus grandis HOM05D000071 ORTHO05D000029 1.7e-07 62.4 84 36.9
Duzib147G0888 Durio zibethinus HOM05D000071 ORTHO05D000029 3.7e-07 61.2 99 34.3
TAR266G0003 Trochodendron aralioides HOM05D000071 ORTHO05D000029 4.8e-07 60.8 76 35.5
arahy.Tifrunner.gnm1.ann1.61Q21E Arachis hypogaea HOM05D000071 ORTHO05D000029 1.1e-06 59.7 111 31.5
FvH4_4g32560 Fragaria vesca HOM05D000071 ORTHO05D000029 1.1e-06 59.7 95 34.7
ECA238G1821 Erigeron canadensis HOM05D000071 ORTHO05D000029 1.4e-06 59.3 105 34.3
SEGI_34516 Sequoiadendron giganteum HOM05D007057 ORTHO05D008878 1.4e-06 59.3 177 45.8
SEGI_35016 Sequoiadendron giganteum HOM05D007057 ORTHO05D008878 1.4e-06 59.3 177 45.8
Eucgr.A02410 Eucalyptus grandis HOM05D000029 ORTHO05D008567 1.8e-06 58.9 82 37.8
CSS0009714 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 2.4e-06 58.5 102 35.3
CSS0042351 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 2.4e-06 58.5 102 35.3
DCAR_027993 Daucus carota HOM05D000761 ORTHO05D001062 2.4e-06 58.5 107 33.6
ECA233G1678 Erigeron canadensis HOM05D000071 ORTHO05D000029 2.4e-06 58.5 103 35.0
BcaC07g40957 Brassica carinata HOM05D000021 ORTHO05D000010 3.1e-06 58.2 113 33.6
C08p39490 Brassica napus HOM05D000021 ORTHO05D000010 3.1e-06 58.2 113 33.6
Manes.07G042900 Manihot esculenta HOM05D000071 ORTHO05D000029 3.1e-06 58.2 120 30.0
Actinidia33174 Actinidia chinensis HOM05D000071 ORTHO05D000029 4.1e-06 57.8 80 35.0
Dinv25664 Davidia involucrata HOM05D000071 ORTHO05D000029 4.1e-06 57.8 88 35.2
A03p19360 Brassica napus HOM05D000071 ORTHO05D000029 5.3e-06 57.4 89 33.7
BolC8t51523H Brassica oleracea HOM05D000021 ORTHO05D000010 5.3e-06 57.4 111 34.2
A09p56550 Brassica napus HOM05D000021 ORTHO05D000010 6.9e-06 57.0 112 33.9
CsaV3_3G032000 Cucumis sativus L. HOM05D000071 ORTHO05D000029 6.9e-06 57.0 112 32.1
FAN26G2527 Fragaria x ananassa HOM05D007057 ORTHO05D008878 6.9e-06 57.0 76 43.4
MBI18_g02451_MAGBIO Magnolia biondii HOM05D000071 ORTHO05D000029 6.9e-06 57.0 83 36.1
Prupe.2G270000 Prunus persica HOM05D000071 ORTHO05D000029 6.9e-06 57.0 102 33.3
SalBow6G6180 Salvia bowleyana HOM05D000071 ORTHO05D000029 6.9e-06 57.0 102 34.3
CSS0038110 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 9.1e-06 56.6 102 34.3
ECA238G4519 Erigeron canadensis HOM05D000071 ORTHO05D000029 9.1e-06 56.6 94 35.1
Prupe.4G145700 Prunus persica HOM05D000029 ORTHO05D002162 9.1e-06 56.6 111 35.1


User provided reference genes

Program Settings