Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr10.1090 Acer truncatum HOM05D000625 ORTHO05D000467 2.8e-181 638.6 363 100.0
Ciclev10015036m.g Citrus clementina HOM05D000625 ORTHO05D000467 1.5e-105 387.1 369 62.1
Prupe.4G085400 Prunus persica HOM05D000625 ORTHO05D000467 2.4e-84 316.6 374 54.3
TWI09G0936 Tripterygium wilfordii HOM05D000625 ORTHO05D000467 2.4e-84 316.6 364 55.2
Potri.011G081500 Populus trichocarpa HOM05D000625 ORTHO05D000467 1.5e-81 307.4 368 53.3
Thecc.06G144600 Theobroma cacao HOM05D000625 ORTHO05D000467 1.5e-81 307.4 371 55.8
Cfa000902 Carpinus fangiana HOM05D000625 ORTHO05D000467 1.8e-79 300.4 365 53.4
TWI73G1040 Tripterygium wilfordii HOM05D000625 ORTHO05D000467 2.4e-79 300.1 364 52.7
Manes.17G074100 Manihot esculenta HOM05D000625 ORTHO05D000467 5.5e-76 288.9 376 50.8
Manes.15G124900 Manihot esculenta HOM05D000625 ORTHO05D000467 2.1e-75 287.0 357 51.8
Duzib235G0761 Durio zibethinus HOM05D000625 ORTHO05D000467 7.9e-75 285.0 373 54.4
Haze_05659 Corylus avellana HOM05D000625 ORTHO05D000467 1.0e-74 284.6 366 52.2
PGR083G0357 Punica granatum HOM05D000625 ORTHO05D000467 3.9e-74 282.7 378 47.1
QL05p055155 Quercus lobata HOM05D000625 ORTHO05D000467 1.1e-73 281.2 378 48.4
Dinv32215 Davidia involucrata HOM05D000625 ORTHO05D000467 1.5e-73 280.8 372 53.5
GSVIVG01021545001 Vitis vinifera HOM05D000625 ORTHO05D000467 9.7e-73 278.1 366 51.1
MD10G1258400 Malus domestica HOM05D000625 ORTHO05D000467 1.3e-72 277.7 374 51.6
Sabra04G0085000 Salix brachista HOM05D000625 ORTHO05D000467 3.7e-72 276.2 378 48.9
ClCG01G024870 Citrullus lanatus HOM05D000625 ORTHO05D000467 4.8e-72 275.8 333 51.4
VMungo1309G1421 Vigna mungo HOM05D000625 ORTHO05D000467 1.4e-71 274.2 376 48.7
Gohir.D05G148800 Gossypium hirsutum HOM05D000625 ORTHO05D000467 4.1e-71 272.7 368 52.7
TAR629G2522 Trochodendron aralioides HOM05D000625 ORTHO05D000467 4.1e-71 272.7 385 48.1
Actinidia07465 Actinidia chinensis HOM05D000625 ORTHO05D000467 6.9e-71 271.9 364 48.9
Dinv21525 Davidia involucrata HOM05D000625 ORTHO05D000467 6.9e-71 271.9 365 48.2
Phvul.009G213200 Phaseolus vulgaris HOM05D000625 ORTHO05D000467 1.2e-70 271.2 376 48.4
FvH4_3g05060 Fragaria vesca HOM05D000625 ORTHO05D000467 2.6e-70 270.0 382 51.0
Gohir.A05G146400 Gossypium hirsutum HOM05D000625 ORTHO05D000467 2.6e-70 270.0 368 52.4
Glyma.09G089500 Glycine max HOM05D000625 ORTHO05D000467 3.4e-70 269.6 381 49.1
Gorai.009G152900 Gossypium raimondii HOM05D000625 ORTHO05D000467 7.7e-70 268.5 370 52.7
Duzib192G0574 Durio zibethinus HOM05D000625 ORTHO05D000467 3.8e-69 266.2 369 52.0
Glyma.15G197100 Glycine max HOM05D000625 ORTHO05D000467 5.0e-69 265.8 372 49.7
Sabra11G0065200 Salix brachista HOM05D000625 ORTHO05D000467 6.5e-69 265.4 336 51.5
Actinidia13444 Actinidia chinensis HOM05D000625 ORTHO05D000467 2.5e-68 263.5 362 47.5
COL.COLO4_31012 Corchorus olitorius HOM05D000625 ORTHO05D000467 4.2e-68 262.7 315 55.9
FAN11G1753 Fragaria x ananassa HOM05D000625 ORTHO05D000467 2.1e-67 260.4 391 50.1
Rhsim13G0117200 Rhododendron simsii HOM05D000625 ORTHO05D000467 3.6e-67 259.6 353 50.4
FAN25G3819 Fragaria x ananassa HOM05D000625 ORTHO05D000467 6.1e-67 258.8 359 52.1
Hma1.2p1_0594F.1_g185990 Hydrangea macrophylla HOM05D000625 ORTHO05D000467 6.1e-67 258.8 338 53.3
vmacro03434 Vaccinium macrocarpon HOM05D000625 ORTHO05D000467 1.4e-66 257.7 392 50.8
CiPaw.09G119900 Carya illinoinensis HOM05D000625 ORTHO05D000467 1.8e-66 257.3 364 48.6
FAN21G0939 Fragaria x ananassa HOM05D000625 ORTHO05D000467 1.8e-66 257.3 363 51.8
Duzib160G0084 Durio zibethinus HOM05D000625 ORTHO05D000467 3.0e-66 256.5 369 49.3
MELO3C007108.2 Cucumis melo HOM05D000625 ORTHO05D000467 6.7e-66 255.4 333 48.9
MD05G1279900 Malus domestica HOM05D000625 ORTHO05D000467 8.8e-66 255.0 363 51.5
CsaV3_6G051990 Cucumis sativus L. HOM05D000625 ORTHO05D000467 4.3e-65 252.7 333 48.3
Eucgr.D00271 Eucalyptus grandis HOM05D000625 ORTHO05D000467 5.7e-65 252.3 401 46.1
FAN16G3061 Fragaria x ananassa HOM05D000625 ORTHO05D000467 1.7e-64 250.8 354 50.6
Glyma.05G143200 Glycine max HOM05D000625 ORTHO05D000467 4.8e-64 249.2 341 50.4
RcHm_v2.0_Chr5g0014901 Rosa chinensis HOM05D000625 ORTHO05D000467 8.2e-64 248.4 339 51.6
Lj4g0003152 Lotus japonicus HOM05D000625 ORTHO05D000467 4.1e-63 246.1 361 50.1
Sed0014179 Sechium edule HOM05D000625 ORTHO05D000467 1.2e-62 244.6 350 47.4
arahy.Tifrunner.gnm1.ann1.G0QL0C Arachis hypogaea HOM05D000625 ORTHO05D000467 2.6e-62 243.4 341 47.8
TAR626G1770 Trochodendron aralioides HOM05D000625 ORTHO05D000467 1.3e-61 241.1 363 45.5
arahy.Tifrunner.gnm1.ann1.FF7LJT Arachis hypogaea HOM05D000625 ORTHO05D000467 2.2e-61 240.4 359 51.3
arahy.Tifrunner.gnm1.ann1.RJ5V20 Arachis hypogaea HOM05D000625 ORTHO05D000467 2.2e-61 240.4 359 51.3
Phvul.002G178100 Phaseolus vulgaris HOM05D000625 ORTHO05D000467 2.9e-61 240.0 355 47.3
Glyma.08G231500 Glycine max HOM05D000625 ORTHO05D000467 5.0e-61 239.2 302 53.0
Glyma.08G099600 Glycine max HOM05D000625 ORTHO05D000467 6.5e-61 238.8 341 47.8
arahy.Tifrunner.gnm1.ann1.J3VXKJ Arachis hypogaea HOM05D000625 ORTHO05D000467 7.2e-60 235.3 359 50.7
Lj6g0026443 Lotus japonicus HOM05D000625 ORTHO05D000467 1.0e-58 231.5 359 46.0
TAR704G0001 Trochodendron aralioides HOM05D000625 ORTHO05D000467 3.9e-58 229.6 395 41.8
Lalb_Chr07g0187501 Lupinus albus HOM05D000625 ORTHO05D000467 5.1e-58 229.2 350 48.6
Lalb_Chr23g0275921 Lupinus albus HOM05D000625 ORTHO05D000467 5.1e-58 229.2 368 44.6
Cpa.g.sc17.48 Carica papaya HOM05D000625 ORTHO05D000467 6.7e-58 228.8 371 44.7
Nn4g26634 Nelumbo nucifera HOM05D000625 ORTHO05D000467 8.8e-58 228.4 344 44.8
Nn3g20338 Nelumbo nucifera HOM05D000625 ORTHO05D000467 1.1e-57 228.0 361 42.1
Medtr2g049770 Medicago truncatula HOM05D000625 ORTHO05D000467 2.0e-57 227.3 350 44.6
Cc03_g08810 Coffea canephora HOM05D000625 ORTHO05D000467 3.3e-57 226.5 389 40.9
Migut.M00882 Erythranthe guttata HOM05D000625 ORTHO05D000467 4.4e-57 226.1 383 46.5
VMungo0251G1602 Vigna mungo HOM05D000625 ORTHO05D000467 4.4e-57 226.1 372 44.4
THA.LOC104820660 Tarenaya hassleriana HOM05D000625 ORTHO05D000467 3.7e-56 223.0 330 49.7
MBI18_g11222_MAGBIO Magnolia biondii HOM05D000625 ORTHO05D000467 3.1e-55 219.9 347 44.4
Psat1g020720 Pisum sativum HOM05D000625 ORTHO05D000467 4.5e-54 216.1 355 43.4
arahy.Tifrunner.gnm1.ann1.W5QJNA Arachis hypogaea HOM05D000625 ORTHO05D000467 3.8e-53 213.0 345 43.8
MSTRG.16264 Avicennia marina HOM05D000625 ORTHO05D000467 1.4e-52 211.1 352 44.3
TPR.G31226 Trifolium pratense HOM05D000625 ORTHO05D000467 5.5e-52 209.1 366 42.1
MELO3C002769.2 Cucumis melo HOM05D000625 ORTHO05D000467 3.6e-51 206.5 361 41.0
ClCG03G006510 Citrullus lanatus HOM05D000625 ORTHO05D000467 6.1e-51 205.7 342 41.5
SalBow8G3181 Salvia bowleyana HOM05D000625 ORTHO05D000467 1.0e-50 204.9 382 42.4
MSTRG.7510 Avicennia marina HOM05D000625 ORTHO05D000467 1.8e-50 204.1 372 42.5
Psat7g080520 Pisum sativum HOM05D000625 ORTHO05D000467 1.7e-48 197.6 348 43.1
Aqoxy1G01660 Aquilegia oxysepala HOM05D000625 ORTHO05D000467 1.1e-47 194.9 414 40.1
Sed0010534 Sechium edule HOM05D000625 ORTHO05D000467 1.1e-47 194.9 348 39.4
Ca_18161_v3 Cicer arietinum L. HOM05D000625 ORTHO05D000467 1.6e-46 191.0 340 40.6
Oeu030961.1 Olea europaea HOM05D000625 ORTHO05D000467 3.8e-45 186.4 363 41.3
ECA236G4706 Erigeron canadensis HOM05D000625 ORTHO05D000467 6.5e-45 185.7 327 42.5
Ca_02598_v3 Cicer arietinum L. HOM05D000625 ORTHO05D000467 1.1e-44 184.9 360 39.7
Gohir.A06G196200 Gossypium hirsutum HOM05D000625 ORTHO05D000467 2.5e-44 183.7 347 41.2
Medtr8g079472 Medicago truncatula HOM05D000625 ORTHO05D000467 2.5e-44 183.7 325 44.6
TPR.G9564 Trifolium pratense HOM05D000625 ORTHO05D000467 7.2e-44 182.2 308 46.8
Peaxi162Scf00465g00819 Petunia axillaris HOM05D000625 ORTHO05D000467 1.6e-43 181.0 351 40.5
DCAR_004817 Daucus carota HOM05D000625 ORTHO05D000467 3.6e-43 179.9 354 42.9
Carub.0001s2851 Capsella rubella HOM05D000625 ORTHO05D000467 4.7e-43 179.5 380 41.1
Sed0027919 Sechium edule HOM05D000625 ORTHO05D000467 6.1e-43 179.1 361 38.0
Gohir.D06G203700 Gossypium hirsutum HOM05D000625 ORTHO05D000467 1.0e-42 178.3 347 41.5
Lsat_1_v5_gn_7_27500 Lactuca sativa HOM05D000625 ORTHO05D000467 1.4e-42 177.9 348 41.4
Sp1g26120 Schrenkiella parvula HOM05D000625 ORTHO05D000467 8.8e-42 175.3 344 41.0
Nitab4.5_0001930g0030 Nicotiana tabacum HOM05D000625 ORTHO05D000467 1.2e-41 174.9 383 38.1
HanXRQChr04g0116591 Helianthus annuus HOM05D000625 ORTHO05D000467 2.6e-41 173.7 375 38.9
CARHR029670 Cardamine hirsuta HOM05D000625 ORTHO05D000467 1.3e-40 171.4 369 38.2
Nitab4.5_0004752g0010 Nicotiana tabacum HOM05D000625 ORTHO05D000467 4.8e-40 169.5 386 36.8
CDE05G1731 Ceratophyllum demersum HOM05D000625 ORTHO05D000467 6.3e-40 169.1 371 41.0
Aa31LG6G5480 Aethionema arabicum HOM05D000625 ORTHO05D000467 8.3e-40 168.7 361 41.3
CDE02G0202 Ceratophyllum demersum HOM05D000625 ORTHO05D000467 1.2e-38 164.9 351 39.9
BcaB03g12207 Brassica carinata HOM05D000625 ORTHO05D000467 1.6e-38 164.5 331 39.9
Gorai.010G237600 Gossypium raimondii HOM05D000625 ORTHO05D000467 2.7e-38 163.7 347 39.2
BcaB03g13837 Brassica carinata HOM05D000625 ORTHO05D000467 1.3e-37 161.4 338 40.8
C03p76620 Brassica napus HOM05D000625 ORTHO05D000467 1.7e-37 161.0 332 39.5
Haze_05667 Corylus avellana HOM05D000625 ORTHO05D000467 3.2e-36 156.8 375 37.3
CANSAT35G1452 Cannabis sativa HOM05D000625 ORTHO05D000467 4.2e-36 156.4 371 41.2
MSTRG.14786 Avicennia marina HOM05D000625 ORTHO05D000467 7.2e-36 155.6 381 40.4
BcaB07g32627 Brassica carinata HOM05D000625 ORTHO05D000467 1.6e-35 154.5 337 38.3
A07p09990 Brassica napus HOM05D000625 ORTHO05D000467 1.0e-34 151.8 334 38.9
BraA07t28791Z Brassica rapa HOM05D000625 ORTHO05D000467 1.0e-34 151.8 334 38.9
A09p36210 Brassica napus HOM05D000625 ORTHO05D000467 3.0e-34 150.2 332 37.3
AT1G30280 Arabidopsis thaliana HOM05D000625 ORTHO05D000467 6.8e-34 149.1 375 36.5
BraA09t39148Z Brassica rapa HOM05D000625 ORTHO05D000467 1.2e-33 148.3 334 37.1
EL10Ac8g19628 Beta vulgaris HOM05D000625 ORTHO05D000467 3.4e-33 146.7 349 35.0
Thhalv10007605m.g Eutrema salsugineum HOM05D000625 ORTHO05D000467 5.7e-33 146.0 345 39.1
AL1G44230 Arabidopsis lyrata HOM05D000625 ORTHO05D000467 1.3e-32 144.8 375 36.3
PSO541G5001 Papaver somniferum HOM05D000625 ORTHO05D000467 6.3e-32 142.5 383 34.5
Sc17g0004800 Simmondsia chinensis HOM05D000625 ORTHO05D000467 6.3e-32 142.5 376 34.6
BcaC06g35499 Brassica carinata HOM05D000625 ORTHO05D000467 5.4e-31 139.4 335 39.4
HPP92_028168 Vanilla planifolia HOM05D005567 ORTHO05D005651 9.1e-31 138.7 352 35.2
BolC7t42030H Brassica oleracea HOM05D000625 ORTHO05D000467 1.6e-30 137.9 335 39.1
PSO675G7500 Papaver somniferum HOM05D000625 ORTHO05D000467 2.0e-30 137.5 385 35.1
C07p15270 Brassica napus HOM05D000625 ORTHO05D000467 2.7e-30 137.1 335 38.8
DCAR_003894 Daucus carota HOM05D000625 ORTHO05D000467 1.0e-29 135.2 326 35.3
BcaB07g32634 Brassica carinata HOM05D000625 ORTHO05D000467 1.5e-28 131.3 337 38.0
unitig_37.g12090 Utricularia gibba HOM05D000625 ORTHO05D000467 3.3e-28 130.2 334 36.5
A08p24540 Brassica napus HOM05D000625 ORTHO05D000467 1.6e-27 127.9 357 33.9
Hund21551 Selenicereus undatus HOM05D000625 ORTHO05D000467 2.1e-27 127.5 331 34.4
BraA08t34410Z Brassica rapa HOM05D000625 ORTHO05D000467 2.8e-27 127.1 357 33.1
BcaC01g00181 Brassica carinata HOM05D000625 ORTHO05D000467 8.0e-27 125.6 331 34.7
BolC3t19921H Brassica oleracea HOM05D000625 ORTHO05D000467 8.0e-27 125.6 331 34.7
BolC5t31645H Brassica oleracea HOM05D000625 ORTHO05D000467 8.9e-26 122.1 331 36.3
AUR62002681 Chenopodium quinoa HOM05D000625 ORTHO05D000467 8.9e-26 122.1 348 31.6
AUR62030136 Chenopodium quinoa HOM05D000625 ORTHO05D000467 2.0e-25 120.9 328 32.6
SGA_v2.0_scaffold106G30658 Striga asiatica HOM05D000625 ORTHO05D000467 1.7e-24 117.9 355 36.1
SalBow7G4302 Salvia bowleyana HOM05D000625 ORTHO05D000467 1.4e-23 114.8 335 35.5
SalBow7G2185 Salvia bowleyana HOM05D000625 ORTHO05D000467 2.4e-23 114.0 335 35.2
ATR1098G052 Amborella trichopoda HOM05D000625 ORTHO05D000467 1.0e-21 108.6 338 33.1
SGA_v2.0_scaffold223G42823 Striga asiatica HOM05D000625 ORTHO05D000467 8.6e-21 105.5 170 44.1
Migut.H01348 Erythranthe guttata HOM05D000625 ORTHO05D000467 2.3e-18 97.4 363 32.2
CsaV3_1G036840 Cucumis sativus L. HOM05D000625 ORTHO05D000467 2.6e-17 94.0 148 43.2
Lj2C322G11 Lonicera japonica HOM05D000625 ORTHO05D000467 2.2e-16 90.9 161 42.2
Zm00001eb224630 Zea mays HOM05D041917 ORTHO05D037240 4.9e-16 89.7 173 38.7
BcaC05g27057 Brassica carinata HOM05D000625 ORTHO05D000467 2.7e-14 84.0 141 43.3
C05p29150 Brassica napus HOM05D000625 ORTHO05D000467 1.0e-13 82.0 135 42.2
DCAR_003893 Daucus carota HOM05D000625 ORTHO05D000467 1.9e-12 77.8 320 30.6
Zm00001eb273800 Zea mays HOM05D041917 ORTHO05D037240 1.2e-11 75.1 189 33.9


User provided reference genes

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