Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr10.106 Acer truncatum HOM05D003580 ORTHO05D004441 0.0e+00 1405.2 712 100.0
Atru.chr10.124 Acer truncatum HOM05D003580 ORTHO05D004441 0.0e+00 1367.8 693 99.9
Ciclev10014110m.g Citrus clementina HOM05D003580 ORTHO05D004441 0.0e+00 1140.6 706 82.6
Potri.010G177200 Populus trichocarpa HOM05D003580 ORTHO05D004441 0.0e+00 1092.8 705 78.4
QL01p005312 Quercus lobata HOM05D003580 ORTHO05D004441 0.0e+00 1080.5 706 78.2
Potri.008G079700 Populus trichocarpa HOM05D003580 ORTHO05D004441 0.0e+00 1079.3 705 77.3
CiPaw.04G180400 Carya illinoinensis HOM05D003580 ORTHO05D004441 7.3e-311 1070.1 708 77.4
Sabra10G0136200 Salix brachista HOM05D003580 ORTHO05D004441 1.8e-309 1065.4 749 73.4
Cfa002307 Carpinus fangiana HOM05D003580 ORTHO05D004441 2.9e-299 1031.6 706 75.1
Thecc.05G131900 Theobroma cacao HOM05D003580 ORTHO05D004441 2.1e-297 1025.4 706 74.2
Sabra08G0059400 Salix brachista HOM05D003580 ORTHO05D004441 1.4e-293 1012.7 769 68.8
TWI53G0960 Tripterygium wilfordii HOM05D003580 ORTHO05D004441 4.5e-292 1007.7 708 74.0
Manes.13G155600 Manihot esculenta HOM05D003580 ORTHO05D004441 3.2e-290 1001.5 706 73.1
Gorai.012G011900 Gossypium raimondii HOM05D003580 ORTHO05D004441 8.0e-289 996.9 705 72.8
Gohir.D04G010100 Gossypium hirsutum HOM05D003580 ORTHO05D004441 3.0e-288 995.0 706 72.5
Haze_24513 Corylus avellana HOM05D003580 ORTHO05D004441 6.3e-286 987.3 796 66.7
Gohir.A05G405500 Gossypium hirsutum HOM05D003580 ORTHO05D004441 1.1e-285 986.5 706 72.1
THA.LOC104820933 Tarenaya hassleriana HOM05D003580 ORTHO05D004441 9.1e-285 983.4 708 72.3
Gorai.009G355000 Gossypium raimondii HOM05D003580 ORTHO05D004441 1.5e-279 966.1 707 70.9
Gohir.A04G049300 Gossypium hirsutum HOM05D003580 ORTHO05D004441 3.4e-279 964.9 707 70.4
Gohir.D05G331100 Gossypium hirsutum HOM05D003580 ORTHO05D004441 1.7e-278 962.6 707 70.6
TAR633G0565 Trochodendron aralioides HOM05D003580 ORTHO05D004441 3.7e-278 961.4 706 70.7
ClCG11G011150 Citrullus lanatus HOM05D003580 ORTHO05D004441 3.1e-277 958.4 706 70.0
TAR362G0544 Trochodendron aralioides HOM05D003580 ORTHO05D004441 3.1e-277 958.4 705 69.9
COL.COLO4_02821 Corchorus olitorius HOM05D003580 ORTHO05D004441 9.2e-277 956.8 724 69.1
MELO3C008782.2 Cucumis melo HOM05D003580 ORTHO05D004441 2.7e-276 955.3 707 68.9
Lalb_Chr21g0313231 Lupinus albus HOM05D003580 ORTHO05D004441 3.5e-276 954.9 705 70.2
Glyma.20G188500 Glycine max HOM05D003580 ORTHO05D004441 4.5e-276 954.5 706 71.2
PGR042G2902 Punica granatum HOM05D003580 ORTHO05D004441 1.0e-275 953.4 706 69.4
Sed0022441 Sechium edule HOM05D003580 ORTHO05D004441 2.3e-275 952.2 708 69.1
CsaV3_2G009280 Cucumis sativus L. HOM05D003580 ORTHO05D004441 6.6e-275 950.7 707 68.9
CARHR197010 Cardamine hirsuta HOM05D003580 ORTHO05D004441 1.9e-274 949.1 709 69.3
Thhalv10012518m.g Eutrema salsugineum HOM05D003580 ORTHO05D004441 8.0e-273 943.7 709 68.4
CANSAT64G0454 Cannabis sativa HOM05D003580 ORTHO05D004441 1.0e-272 943.3 707 70.4
Sp6g27860 Schrenkiella parvula HOM05D003580 ORTHO05D004441 1.8e-272 942.6 707 68.6
Actinidia22096 Actinidia chinensis HOM05D003580 ORTHO05D004441 4.0e-272 941.4 706 69.5
arahy.Tifrunner.gnm1.ann1.U0AKQE Arachis hypogaea HOM05D003580 ORTHO05D004441 6.8e-272 940.6 705 69.5
arahy.Tifrunner.gnm1.ann1.TPGZ8P Arachis hypogaea HOM05D003580 ORTHO05D004441 5.7e-271 937.6 705 69.5
Glyma.10G201900 Glycine max HOM05D003580 ORTHO05D004441 1.7e-270 936.0 706 70.0
Lalb_Chr02g0151301 Lupinus albus HOM05D003580 ORTHO05D004441 4.9e-270 934.5 705 69.2
Eucgr.G00871 Eucalyptus grandis HOM05D003580 ORTHO05D004441 1.2e-268 929.9 705 68.4
GSVIVG01006267001 Vitis vinifera HOM05D003580 ORTHO05D004441 4.6e-268 927.9 698 71.1
Ca_10488_v3 Cicer arietinum L. HOM05D003580 ORTHO05D004441 1.0e-267 926.8 708 68.6
VMungo0720G1645 Vigna mungo HOM05D003580 ORTHO05D004441 2.3e-267 925.6 706 68.3
Lj5g0021899 Lotus japonicus HOM05D003580 ORTHO05D004441 3.9e-267 924.9 706 68.7
Aa31LG11G13320 Aethionema arabicum HOM05D003580 ORTHO05D004441 6.6e-267 924.1 730 66.7
Psat6g176280 Pisum sativum HOM05D003580 ORTHO05D004441 1.1e-266 923.3 705 68.9
Carub.0006s1449 Capsella rubella HOM05D003580 ORTHO05D004441 1.5e-266 922.9 709 68.3
Phvul.007G105200 Phaseolus vulgaris HOM05D003580 ORTHO05D004441 1.5e-266 922.9 706 69.1
Sed0017385 Sechium edule HOM05D003580 ORTHO05D004441 1.9e-266 922.5 706 67.3
A03p07660 Brassica napus HOM05D003580 ORTHO05D004441 4.3e-266 921.4 708 67.2
AL6G27200 Arabidopsis lyrata HOM05D003580 ORTHO05D004441 2.1e-265 919.1 709 67.7
AT5G16300 Arabidopsis thaliana HOM05D003580 ORTHO05D004441 6.2e-265 917.5 709 67.6
EL10Ac4g10045 Beta vulgaris HOM05D003580 ORTHO05D004441 8.0e-265 917.1 703 68.1
BcaB01g04993 Brassica carinata HOM05D003580 ORTHO05D004441 2.3e-264 915.6 707 67.3
BraA03t10094Z Brassica rapa HOM05D003580 ORTHO05D004441 3.4e-263 911.8 708 66.7
Hund21939 Selenicereus undatus HOM05D003580 ORTHO05D004441 5.8e-263 911.0 705 67.8
BolC9t58909H Brassica oleracea HOM05D003580 ORTHO05D004441 1.3e-262 909.8 707 66.6
BraA10t44342Z Brassica rapa HOM05D003580 ORTHO05D004441 1.3e-262 909.8 707 66.3
C03p08900 Brassica napus HOM05D003580 ORTHO05D004441 1.1e-261 906.7 708 66.5
BolC3t13385H Brassica oleracea HOM05D003580 ORTHO05D004441 5.4e-261 904.4 708 66.4
Nn1g09424 Nelumbo nucifera HOM05D003580 ORTHO05D004441 1.2e-260 903.3 704 65.5
AUR62000253 Chenopodium quinoa HOM05D003580 ORTHO05D004441 5.0e-259 897.9 703 66.4
Lj2A356T45 Lonicera japonica HOM05D003580 ORTHO05D004441 7.3e-258 894.0 706 66.9
Dinv20243 Davidia involucrata HOM05D003580 ORTHO05D004441 1.2e-257 893.3 709 66.9
Nn5g28173 Nelumbo nucifera HOM05D003580 ORTHO05D004441 4.7e-257 891.3 705 66.0
vmacro09152 Vaccinium macrocarpon HOM05D003580 ORTHO05D004441 3.1e-256 888.6 829 59.8
Solyc03g120700.3 Solanum lycopersicum HOM05D003580 ORTHO05D004441 6.8e-256 887.5 706 65.3
Sopen03g039520 Solanum pennellii HOM05D003580 ORTHO05D004441 1.5e-255 886.3 706 65.3
PGSC0003DMG400002624 Solanum tuberosum HOM05D003580 ORTHO05D004441 2.2e-254 882.5 706 65.3
CAN.G438.18 Capsicum annuum HOM05D003580 ORTHO05D004441 4.9e-254 881.3 706 65.3
Ah.04g159420 Amaranthus hybridus HOM05D003580 ORTHO05D004441 1.2e-252 876.7 725 64.8
Prupe.1G575000 Prunus persica HOM05D003580 ORTHO05D004441 6.0e-252 874.4 705 66.5
RcHm_v2.0_Chr7g0220971 Rosa chinensis HOM05D003580 ORTHO05D004441 2.5e-250 869.0 713 66.2
Actinidia30566 Actinidia chinensis HOM05D003580 ORTHO05D004441 1.6e-249 866.3 706 65.2
MD08G1237500 Malus domestica HOM05D003580 ORTHO05D004441 1.6e-249 866.3 706 66.9
ECA248G2481 Erigeron canadensis HOM05D003580 ORTHO05D004441 2.1e-249 865.9 704 63.9
HanXRQChr01g0024861 Helianthus annuus HOM05D003580 ORTHO05D004441 2.1e-249 865.9 704 64.3
Cc06_g21420 Coffea canephora HOM05D003580 ORTHO05D004441 1.8e-248 862.8 706 65.0
FAN18G2191 Fragaria x ananassa HOM05D003580 ORTHO05D004441 1.8e-248 862.8 719 64.7
DCAR_019887 Daucus carota HOM05D003580 ORTHO05D004441 5.2e-248 861.3 704 64.3
MD15G1429400 Malus domestica HOM05D003580 ORTHO05D004441 1.7e-246 856.3 706 66.0
Duzib140G0001 Durio zibethinus HOM05D003580 ORTHO05D004441 1.2e-244 850.1 708 64.7
C09p60740 Brassica napus HOM05D003580 ORTHO05D004441 6.0e-244 847.8 653 66.2
FAN08G0025 Fragaria x ananassa HOM05D003580 ORTHO05D004441 1.0e-243 847.0 708 64.1
PSO732G0238 Papaver somniferum HOM05D003580 ORTHO05D004441 1.0e-243 847.0 712 62.2
PSO675G0774 Papaver somniferum HOM05D003580 ORTHO05D004441 1.3e-243 846.7 709 62.9
Aqoxy6G00271 Aquilegia oxysepala HOM05D003580 ORTHO05D004441 1.7e-243 846.3 712 61.7
A10p22770 Brassica napus HOM05D003580 ORTHO05D004441 3.9e-243 845.1 653 65.7
Migut.J00662 Erythranthe guttata HOM05D003580 ORTHO05D004441 4.3e-242 841.6 706 63.2
HanXRQChr12g0356901 Helianthus annuus HOM05D003580 ORTHO05D004441 4.7e-241 838.2 704 61.8
PSO063G3475 Papaver somniferum HOM05D003580 ORTHO05D004441 1.1e-240 837.0 705 62.4
FAN04G1111 Fragaria x ananassa HOM05D003580 ORTHO05D004441 1.8e-240 836.3 708 63.4
Rhsim04G0086300 Rhododendron simsii HOM05D003580 ORTHO05D004441 3.8e-238 828.6 805 58.6
AUR62006600 Chenopodium quinoa HOM05D003580 ORTHO05D004441 2.7e-236 822.4 706 62.3
Nitab4.5_0000001g0420 Nicotiana tabacum HOM05D003580 ORTHO05D004441 6.0e-236 821.2 677 64.3
Lsat_1_v5_gn_1_58860 Lactuca sativa HOM05D003580 ORTHO05D004441 1.7e-235 819.7 720 62.8
MSTRG.19281 Avicennia marina HOM05D003580 ORTHO05D004441 5.1e-235 818.1 713 60.9
MBI18_g04901_MAGBIO Magnolia biondii HOM05D003580 ORTHO05D004441 2.5e-234 815.8 715 60.8
Oeu055491.1 Olea europaea HOM05D003580 ORTHO05D004441 1.8e-232 809.7 706 61.9
Oeu011931.1 Olea europaea HOM05D003580 ORTHO05D004441 3.4e-231 805.4 705 60.9
TPR.G2546 Trifolium pratense HOM05D003580 ORTHO05D004441 3.3e-226 788.9 706 61.8
FAN13G3018 Fragaria x ananassa HOM05D003580 ORTHO05D004441 1.1e-224 783.9 650 63.8
Dinv14590 Davidia involucrata HOM05D003580 ORTHO05D004441 4.5e-223 778.5 591 70.6
CSS0030366 Camellia sinensis var. sinensis HOM05D003580 ORTHO05D004441 6.9e-216 754.6 596 66.4
Peaxi162Scf00076g00824 Petunia axillaris HOM05D003580 ORTHO05D004441 1.3e-214 750.4 705 58.0
Nitab4.5_0000693g0020 Nicotiana tabacum HOM05D003580 ORTHO05D004441 1.4e-213 746.9 605 63.8
unitig_749.g14304 Utricularia gibba HOM05D003580 ORTHO05D004441 7.2e-205 718.0 740 53.4
CDE04G2219 Ceratophyllum demersum HOM05D003580 ORTHO05D004441 9.4e-205 717.6 711 54.0
ATR0743G251 Amborella trichopoda HOM05D003580 ORTHO05D004441 3.0e-203 712.6 722 53.6
FvH4_5g28760 Fragaria vesca HOM05D003580 ORTHO05D004441 3.7e-201 705.7 589 63.2
Medtr1g492710 Medicago truncatula HOM05D003580 ORTHO05D004441 2.6e-199 699.5 736 53.1
Zm00001eb369950 Zea mays HOM05D003580 ORTHO05D004441 3.2e-197 692.6 726 52.8
Zm00001eb151630 Zea mays HOM05D003580 ORTHO05D004441 2.2e-193 679.9 730 51.5
SGA_v2.0_scaffold31G12889 Striga asiatica HOM05D003580 ORTHO05D004441 7.0e-192 674.9 663 56.1
HPP92_017521 Vanilla planifolia HOM05D003580 ORTHO05D004441 2.5e-189 666.4 732 52.0
SHI02481 Sapria himalayana HOM05D003580 ORTHO05D004441 7.2e-189 664.8 715 52.9
Os01g0777000 Oryza sativa ssp. japonica HOM05D003580 ORTHO05D004441 2.1e-188 663.3 670 54.0
Sc16g0010760 Simmondsia chinensis HOM05D003580 ORTHO05D004441 4.8e-185 652.1 529 62.9
SGA_v2.0_scaffold13G06689 Striga asiatica HOM05D003580 ORTHO05D004441 1.1e-165 587.8 535 58.7
SGA_v2.0_scaffold31G12887 Striga asiatica HOM05D003580 ORTHO05D004441 6.4e-153 545.4 666 48.2
Cpa.g.sc440.1 Carica papaya HOM05D003580 ORTHO05D004441 2.2e-145 520.4 371 69.8
SEGI_21118 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.4e-136 490.3 612 45.9
Mapoly0006s0304 Marchantia polymorpha HOM05D003580 ORTHO05D004441 1.0e-134 485.0 749 40.9
CDE02G3888 Ceratophyllum demersum HOM05D003580 ORTHO05D004441 1.1e-125 454.9 463 54.9
SEGI_02361 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.5e-117 427.2 397 57.9
Pp3c21_18130 Physcomitrium patens HOM05D003580 ORTHO05D004441 6.2e-116 422.5 751 36.6
AagrBONN_evm.TU.Sc2ySwM_228.612 Anthoceros agrestis HOM05D003580 ORTHO05D004441 1.0e-110 405.2 770 34.4
SMO116G0219 Selaginella moellendorffii HOM05D003580 ORTHO05D004441 4.3e-101 373.2 697 36.6
Eucgr.A01176 Eucalyptus grandis HOM05D003580 ORTHO05D004441 8.4e-97 359.0 422 50.0
Pp3c18_6580 Physcomitrium patens HOM05D003580 ORTHO05D004441 2.3e-94 350.9 622 36.3
BcaNung02234 Brassica carinata HOM05D003580 ORTHO05D004441 7.2e-88 329.3 334 56.9
Pp3c22_14630 Physcomitrium patens HOM05D003580 ORTHO05D004441 3.2e-72 277.3 717 31.7
QL01p051634 Quercus lobata HOM05D003580 ORTHO05D004441 1.0e-62 245.7 299 49.2
Cpa.g.sc272.6 Carica papaya HOM05D003580 ORTHO05D004441 1.4e-62 245.4 155 78.1
SGA_v2.0_scaffold1489G53965 Striga asiatica HOM05D003580 ORTHO05D004441 5.3e-59 233.4 227 56.8
SEGI_02603 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 4.5e-58 230.3 381 38.3
Cfa002308 Carpinus fangiana HOM05D003580 ORTHO05D004441 1.3e-52 212.2 148 70.9
QL01p051611 Quercus lobata HOM05D003580 ORTHO05D004441 1.3e-52 212.2 119 88.2
SEGI_09994 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.3e-52 212.2 306 39.9
arahy.Tifrunner.gnm1.ann1.0G6L2R Arachis hypogaea HOM05D003580 ORTHO05D004441 5.0e-49 200.3 221 52.0
arahy.Tifrunner.gnm1.ann1.G7UC7Z Arachis hypogaea HOM05D003580 ORTHO05D004441 1.5e-48 198.7 187 57.2
CBR_g38824 Chara braunii HOM05D003580 ORTHO05D000002 2.1e-47 194.9 310 42.3
SEGI_10162 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 3.2e-43 181.0 269 39.0
TPR.G7717 Trifolium pratense HOM05D003580 ORTHO05D004441 1.8e-38 165.2 127 66.9
SEGI_40357 Sequoiadendron giganteum HOM05D003580 ORTHO05D000003 1.3e-36 159.1 218 38.5
MCO16G457 Micromonas commoda HOM05D003580 ORTHO05D004441 1.3e-33 149.1 433 28.2
Dinv14589 Davidia involucrata HOM05D003580 ORTHO05D004441 3.0e-33 147.9 90 77.8
BcaB04g17891 Brassica carinata HOM05D003580 ORTHO05D004441 1.5e-32 145.6 98 74.5
SEGI_26119 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 5.6e-32 143.7 215 38.1
SEGI_41100 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 9.8e-29 132.9 265 35.1
Cpa.g.c39794 Carica papaya HOM05D003580 ORTHO05D004441 2.7e-26 124.8 65 92.3
QL01p051624 Quercus lobata HOM05D003580 ORTHO05D004441 6.6e-25 120.2 94 64.9
Cre14.g628050 Chlamydomonas reinhardtii HOM05D003580 ORTHO05D004441 8.1e-23 113.2 477 26.0
SEGI_21703 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 6.0e-18 97.1 114 44.7
SEGI_18317 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 7.8e-18 96.7 90 48.9
SEGI_40013 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 6.6e-17 93.6 122 40.2
SEGI_00259 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.5e-16 92.4 113 41.6
PSO063G6607 Papaver somniferum HOM05D003580 ORTHO05D004441 1.9e-16 92.0 97 48.5
CBR_g38826 Chara braunii HOM05D000019 ORTHO05D000048 5.6e-16 90.5 518 22.0
PRCOL_00004619 Prasinoderma coloniale HOM05D003580 ORTHO05D004441 7.3e-16 90.1 422 24.6
SEGI_23236 Sequoiadendron giganteum HOM05D003580 ORTHO05D000001 1.6e-15 89.0 90 48.9
SEGI_20620 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.1e-15 88.6 81 51.9
SEGI_01451 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.1e-14 86.3 93 45.2
SEGI_17593 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.8e-14 85.5 87 46.0
SEGI_07846 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 3.1e-14 84.7 84 48.8
SEGI_24255 Sequoiadendron giganteum HOM05D000018 ORTHO05D003948 8.9e-14 83.2 83 47.0
Medtr1g492720 Medicago truncatula HOM05D003580 ORTHO05D004441 6.4e-12 77.0 60 68.3
SEGI_37860 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.9e-11 75.5 76 44.7
SEGI_10836 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.9e-08 65.5 63 42.9
SEGI_32072 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.1e-06 59.7 53 49.1
SEGI_00546 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.4e-06 58.5 48 52.1


User provided reference genes

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