Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr10.1031 Acer truncatum HOM05D006030 ORTHO05D007475 8.0e-172 607.1 322 100.0
Ciclev10015995m.g Citrus clementina HOM05D006030 ORTHO05D007475 6.1e-111 404.8 325 70.2
TAR627G0722 Trochodendron aralioides HOM05D006030 ORTHO05D007475 1.4e-99 367.1 326 66.0
MD10G1256000 Malus domestica HOM05D006030 ORTHO05D007475 7.7e-98 361.3 316 67.4
Hma1.2p1_0689F.1_g203740 Hydrangea macrophylla HOM05D006030 ORTHO05D007475 4.2e-96 355.5 326 63.5
Cfa000873 Carpinus fangiana HOM05D006030 ORTHO05D007475 4.0e-94 349.0 311 63.3
CiPaw.09G117700 Carya illinoinensis HOM05D006030 ORTHO05D007475 6.7e-94 348.2 325 61.8
Prupe.4G087600 Prunus persica HOM05D006030 ORTHO05D007475 8.8e-94 347.8 320 63.8
QL05p054330 Quercus lobata HOM05D006030 ORTHO05D007475 8.8e-94 347.8 326 61.7
Haze_05717 Corylus avellana HOM05D006030 ORTHO05D007475 1.7e-92 343.6 312 63.1
TWI09G0666 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 6.3e-92 341.7 301 63.5
Dinv21492 Davidia involucrata HOM05D006030 ORTHO05D007475 1.8e-91 340.1 326 62.6
TWI53G0643 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 1.2e-90 337.4 299 64.5
Manes.15G125900 Manihot esculenta HOM05D006030 ORTHO05D007475 2.7e-90 336.3 321 61.7
Thecc.02G010100 Theobroma cacao HOM05D006030 ORTHO05D007475 1.0e-89 334.3 307 64.2
CSS0019216 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 1.3e-89 334.0 325 58.5
MD05G1060100 Malus domestica HOM05D006030 ORTHO05D007475 1.3e-89 334.0 317 63.1
Potri.011G091700 Populus trichocarpa HOM05D006030 ORTHO05D007475 5.5e-88 328.6 323 61.9
CSS0008742 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 6.8e-86 321.6 325 55.7
Duzib132G1046 Durio zibethinus HOM05D006030 ORTHO05D007475 1.5e-85 320.5 304 62.8
Nitab4.5_0000315g0160 Nicotiana tabacum HOM05D006030 ORTHO05D007475 5.7e-85 318.5 327 56.6
Rhsim02G0159700 Rhododendron simsii HOM05D006030 ORTHO05D007475 2.2e-84 316.6 326 57.7
TAR624G0353 Trochodendron aralioides HOM05D006030 ORTHO05D007475 2.2e-84 316.6 318 58.2
FAN11G1717 Fragaria x ananassa HOM05D006030 ORTHO05D007475 2.8e-84 316.2 321 62.0
Sabra11G0085900 Salix brachista HOM05D006030 ORTHO05D007475 8.3e-84 314.7 318 60.4
FvH4_3g09520 Fragaria vesca HOM05D006030 ORTHO05D007475 1.8e-83 313.5 321 61.7
CSS0023088 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 1.2e-82 310.8 325 55.1
FAN16G0477 Fragaria x ananassa HOM05D006030 ORTHO05D007475 3.5e-82 309.3 321 61.1
Nitab4.5_0008802g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 3.5e-82 309.3 327 56.0
Duzib052G0461 Durio zibethinus HOM05D006030 ORTHO05D007475 2.2e-81 306.6 288 61.8
Peaxi162Scf00045g00235 Petunia axillaris HOM05D000253 ORTHO05D000149 3.8e-81 305.8 325 54.8
FAN21G0577 Fragaria x ananassa HOM05D006030 ORTHO05D007475 8.5e-81 304.7 321 60.4
FAN25G1233 Fragaria x ananassa HOM05D006030 ORTHO05D007475 8.5e-81 304.7 309 61.8
TPR.G26249 Trifolium pratense HOM05D006030 ORTHO05D007475 1.5e-80 303.9 302 54.3
Actinidia39595 Actinidia chinensis HOM05D006030 ORTHO05D007475 1.9e-80 303.5 326 57.1
RcHm_v2.0_Chr5g0015101 Rosa chinensis HOM05D006030 ORTHO05D007475 2.5e-80 303.1 319 59.9
Manes.17G075000 Manihot esculenta HOM05D006030 ORTHO05D007475 4.2e-80 302.4 308 59.1
CANSAT35G1388 Cannabis sativa HOM05D006030 ORTHO05D007475 8.0e-79 298.1 334 55.7
Medtr2g018890 Medicago truncatula HOM05D006030 ORTHO05D007475 1.0e-78 297.7 301 54.8
Lj6g0008094 Lotus japonicus HOM05D006030 ORTHO05D007475 1.4e-78 297.4 305 56.4
MSTRG.14783 Avicennia marina HOM05D006030 ORTHO05D007475 4.0e-78 295.8 334 52.7
MBI18_g10587_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 1.2e-77 294.3 315 55.2
Ca_00520_v3 Cicer arietinum L. HOM05D006030 ORTHO05D007475 1.5e-77 293.9 306 55.2
COL.COLO4_17663 Corchorus olitorius HOM05D006030 ORTHO05D007475 1.3e-76 290.8 314 56.4
ClCG03G006430 Citrullus lanatus HOM05D006030 ORTHO05D007475 3.7e-76 289.3 322 54.0
Lalb_Chr18g0055221 Lupinus albus HOM05D006030 ORTHO05D007475 1.1e-75 287.7 300 54.7
PGSC0003DMG400005380 Solanum tuberosum HOM05D006030 ORTHO05D007475 3.1e-75 286.2 324 51.2
Lalb_Chr15g0086701 Lupinus albus HOM05D006030 ORTHO05D007475 4.1e-75 285.8 301 56.5
Solyc08g023270.3 Solanum lycopersicum HOM05D006030 ORTHO05D007475 4.1e-75 285.8 324 51.9
Sopen08g008180 Solanum pennellii HOM05D006030 ORTHO05D007475 4.1e-75 285.8 324 51.9
CAN.G36.30 Capsicum annuum HOM05D006030 ORTHO05D007475 5.4e-75 285.4 323 51.4
Psat1g191320 Pisum sativum HOM05D006030 ORTHO05D007475 9.2e-75 284.6 302 53.6
Glyma.15G092100 Glycine max HOM05D006030 ORTHO05D007475 1.3e-73 280.8 307 54.4
Lalb_Chr20g0117731 Lupinus albus HOM05D006030 ORTHO05D007475 5.0e-73 278.9 302 55.0
Aa31LG9G8890 Aethionema arabicum HOM05D006030 ORTHO05D007475 6.6e-73 278.5 312 52.6
MELO3C002779.2 Cucumis melo HOM05D006030 ORTHO05D007475 8.6e-73 278.1 322 52.8
Thhalv10029201m.g Eutrema salsugineum HOM05D006030 ORTHO05D007475 1.5e-72 277.3 314 52.2
Sp6g03610 Schrenkiella parvula HOM05D006030 ORTHO05D007475 2.5e-72 276.6 314 51.9
Lj2A324T65 Lonicera japonica HOM05D006030 ORTHO05D007475 3.3e-72 276.2 327 52.3
Lj1A1167T61 Lonicera japonica HOM05D006030 ORTHO05D007475 4.3e-72 275.8 312 53.5
Carub.0006s3344 Capsella rubella HOM05D006030 ORTHO05D007475 7.3e-72 275.0 315 53.0
CsaV3_1G036960 Cucumis sativus L. HOM05D006030 ORTHO05D007475 7.3e-72 275.0 310 53.9
Glyma.13G220300 Glycine max HOM05D006030 ORTHO05D007475 1.2e-71 274.2 307 54.4
Sc05g0005830 Simmondsia chinensis HOM05D006030 ORTHO05D007475 2.1e-71 273.5 300 54.3
AL6G49160 Arabidopsis lyrata HOM05D006030 ORTHO05D007475 2.8e-71 273.1 316 51.9
Phvul.006G167100 Phaseolus vulgaris HOM05D006030 ORTHO05D007475 1.5e-69 267.3 311 51.4
SalBow7G1462 Salvia bowleyana HOM05D006030 ORTHO05D007475 2.6e-69 266.5 340 49.4
SalBow7G3121 Salvia bowleyana HOM05D006030 ORTHO05D007475 2.6e-69 266.5 340 49.4
CARHR252040 Cardamine hirsuta HOM05D006030 ORTHO05D007475 3.4e-69 266.2 314 50.3
Cc09_g08600 Coffea canephora HOM05D006030 ORTHO05D007475 5.7e-69 265.4 339 50.1
AT4G03620 Arabidopsis thaliana HOM05D006030 ORTHO05D007475 1.3e-68 264.2 316 50.9
Aqoxy1G01654 Aquilegia oxysepala HOM05D006030 ORTHO05D007475 3.7e-68 262.7 304 53.6
PSO541G2924 Papaver somniferum HOM05D006030 ORTHO05D007475 3.7e-68 262.7 310 53.5
BcaB01g01909 Brassica carinata HOM05D006030 ORTHO05D007475 1.1e-67 261.2 315 50.8
Eucgr.E02463 Eucalyptus grandis HOM05D006030 ORTHO05D007475 1.1e-67 261.2 261 58.2
Nn4g26650 Nelumbo nucifera HOM05D006030 ORTHO05D007475 1.1e-67 261.2 292 54.1
EL10Ac8g19610 Beta vulgaris HOM05D006030 ORTHO05D007475 2.4e-67 260.0 311 50.8
Migut.H01344 Erythranthe guttata HOM05D006030 ORTHO05D007475 5.4e-67 258.8 348 49.7
Peaxi162Scf00333g00215 Petunia axillaris HOM05D006030 ORTHO05D007475 5.4e-67 258.8 281 52.7
BraA09t35933Z Brassica rapa HOM05D006030 ORTHO05D007475 7.0e-67 258.5 315 50.5
THA.LOC104806979 Tarenaya hassleriana HOM05D006030 ORTHO05D007475 9.2e-67 258.1 311 49.5
A09p02880 Brassica napus HOM05D006030 ORTHO05D007475 3.5e-66 256.1 315 50.2
VMungo0540G2189 Vigna mungo HOM05D006030 ORTHO05D007475 3.5e-66 256.1 305 51.1
Nitab4.5_0002900g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 5.9e-66 255.4 305 48.9
Nitab4.5_0000717g0050 Nicotiana tabacum HOM05D006030 ORTHO05D007475 1.7e-65 253.8 305 48.9
PSO675G1541 Papaver somniferum HOM05D006030 ORTHO05D007475 1.7e-65 253.8 313 52.7
C09p02960 Brassica napus HOM05D006030 ORTHO05D007475 2.3e-65 253.4 315 49.8
Sed0012497 Sechium edule HOM05D006030 ORTHO05D007475 3.0e-65 253.1 308 51.6
AUR62002659 Chenopodium quinoa HOM05D006030 ORTHO05D007475 3.9e-65 252.7 307 50.8
PSO541G2932 Papaver somniferum HOM05D006030 ORTHO05D007475 5.0e-65 252.3 316 52.8
PGR031G1516 Punica granatum HOM05D006030 ORTHO05D007475 5.0e-65 252.3 311 50.8
Sed0007526 Sechium edule HOM05D006030 ORTHO05D007475 3.3e-64 249.6 293 51.2
AUR62030127 Chenopodium quinoa HOM05D006030 ORTHO05D007475 7.3e-64 248.4 308 50.6
BcaC04g23958 Brassica carinata HOM05D006030 ORTHO05D007475 9.5e-64 248.1 315 49.2
BolC9t53223H Brassica oleracea HOM05D006030 ORTHO05D007475 9.5e-64 248.1 315 49.2
Nn3g20281 Nelumbo nucifera HOM05D006030 ORTHO05D007475 1.2e-63 247.7 268 54.5
ECA236G5152 Erigeron canadensis HOM05D006030 ORTHO05D007475 2.8e-63 246.5 295 50.8
arahy.Tifrunner.gnm1.ann1.IB7BS1 Arachis hypogaea HOM05D006030 ORTHO05D007475 1.4e-62 244.2 308 50.0
arahy.Tifrunner.gnm1.ann1.Z0KP5S Arachis hypogaea HOM05D006030 ORTHO05D007475 1.8e-62 243.8 308 50.0
DCAR_007858 Daucus carota HOM05D006030 ORTHO05D007475 2.6e-61 240.0 287 52.3
HanXRQChr15g0481561 Helianthus annuus HOM05D006030 ORTHO05D007475 7.5e-61 238.4 317 48.6
PSO675G3639 Papaver somniferum HOM05D006030 ORTHO05D007475 1.3e-60 237.7 316 50.9
MBI02_g11375_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 2.2e-60 236.9 290 50.7
Ah.09g232450 Amaranthus hybridus HOM05D006030 ORTHO05D007475 1.2e-58 231.1 287 47.7
MSTRG.13261 Avicennia marina HOM05D006030 ORTHO05D007475 1.2e-58 231.1 331 45.3
DCAR_027876 Daucus carota HOM05D006030 ORTHO05D007475 1.2e-58 231.1 305 49.2
HanXRQChr04g0112111 Helianthus annuus HOM05D006030 ORTHO05D007475 2.0e-58 230.3 298 47.7
Hund21555 Selenicereus undatus HOM05D006030 ORTHO05D007475 2.7e-58 229.9 306 47.7
GSVIVG01021577001 Vitis vinifera HOM05D006030 ORTHO05D007475 3.0e-57 226.5 204 65.2
SalBow8G3821 Salvia bowleyana HOM05D006030 ORTHO05D007475 5.0e-57 225.7 301 45.8
SGA_v2.0_scaffold51G18644 Striga asiatica HOM05D006030 ORTHO05D007475 2.5e-56 223.4 299 46.2
Lsat_1_v5_gn_1_116040 Lactuca sativa HOM05D006030 ORTHO05D007475 3.6e-55 219.5 297 46.1
Lsat_1_v5_gn_7_32280 Lactuca sativa HOM05D006030 ORTHO05D007475 1.5e-53 214.2 305 46.2
DCAR_003876 Daucus carota HOM05D006030 ORTHO05D007475 4.1e-51 206.1 261 50.2
Sopen02g005930 Solanum pennellii HOM05D006030 ORTHO05D007475 5.4e-51 205.7 281 46.3
Solyc02g021450.2 Solanum lycopersicum HOM05D006030 ORTHO05D007475 7.1e-51 205.3 281 46.3
PGSC0003DMG400031336 Solanum tuberosum HOM05D006030 ORTHO05D007475 3.3e-48 196.4 281 44.8
arahy.Tifrunner.gnm1.ann1.TN2AI9 Arachis hypogaea HOM05D006030 ORTHO05D007475 2.1e-47 193.7 293 43.7
arahy.Tifrunner.gnm1.ann1.DKT922 Arachis hypogaea HOM05D006030 ORTHO05D007475 3.6e-47 193.0 293 43.7
Cpa.g.sc17.66 Carica papaya HOM05D006030 ORTHO05D007475 5.6e-40 169.1 165 61.2
ATR0626G038 Amborella trichopoda HOM05D006030 ORTHO05D007475 6.0e-34 149.1 228 43.9
HPP92_019506 Vanilla planifolia HOM05D006030 ORTHO05D007475 1.3e-31 141.4 287 37.3
Migut.M01870 Erythranthe guttata HOM05D006030 ORTHO05D007475 5.8e-29 132.5 137 56.9
unitig_37.g12083 Utricularia gibba HOM05D006030 ORTHO05D007475 3.3e-24 116.7 181 43.1
Duzib248G1648 Durio zibethinus HOM05D006030 ORTHO05D007475 1.4e-22 111.3 122 54.1
SEGI_26103 Sequoiadendron giganteum HOM05D006030 ORTHO05D007475 6.7e-17 92.4 206 35.0
Nn1g09396 Nelumbo nucifera HOM05D006030 ORTHO05D007475 5.3e-14 82.8 165 38.2
Peaxi162Scf00333g00214 Petunia axillaris HOM05D006030 ORTHO05D007475 2.0e-13 80.9 101 53.5
SGA_v2.0_scaffold106G30660 Striga asiatica HOM05D006030 ORTHO05D007475 1.6e-10 71.2 91 48.4


User provided reference genes

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