Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.974 Acer truncatum HOM05D005524 ORTHO05D005392 4.5e-24 114.0 67 100.0
Atru.chr1.1006 Acer truncatum HOM05D005524 ORTHO05D005392 1.3e-23 112.5 67 98.5
Potri.006G056200 Populus trichocarpa HOM05D005524 ORTHO05D005392 5.1e-12 73.9 67 65.7
Duzib128G1940 Durio zibethinus HOM05D005524 ORTHO05D005392 6.7e-12 73.6 67 65.7
Thecc.05G164300 Theobroma cacao HOM05D005524 ORTHO05D005392 7.4e-11 70.1 67 70.1
Duzib106G1083 Durio zibethinus HOM05D005524 ORTHO05D005392 9.6e-11 69.7 67 65.7
Eucgr.A02403 Eucalyptus grandis HOM05D005524 ORTHO05D005392 1.3e-10 69.3 67 67.2
AT3G57690 Arabidopsis thaliana HOM05D005524 ORTHO05D005392 2.1e-10 68.6 67 71.6
Duzib093G2098 Durio zibethinus HOM05D005524 ORTHO05D005392 2.1e-10 68.6 67 64.2
Potri.016G052001 Populus trichocarpa HOM05D005524 ORTHO05D005392 2.1e-10 68.6 67 64.2
AT2G41905 Arabidopsis thaliana HOM05D005524 ORTHO05D005392 2.8e-10 68.2 67 70.1
Dinv18091 Davidia involucrata HOM05D005524 ORTHO05D005392 2.8e-10 68.2 67 68.7
CARHR167870 Cardamine hirsuta HOM05D005524 ORTHO05D005392 3.7e-10 67.8 67 68.7
AL5G39310 Arabidopsis lyrata HOM05D005524 ORTHO05D005392 4.8e-10 67.4 67 70.1
Sp5g04940 Schrenkiella parvula HOM05D005524 ORTHO05D005392 4.8e-10 67.4 67 70.1
CARHR137000 Cardamine hirsuta HOM05D005524 ORTHO05D005392 6.2e-10 67.0 67 65.7
AL4G40250 Arabidopsis lyrata HOM05D005524 ORTHO05D005392 8.2e-10 66.6 67 68.7
BcaNung07196 Brassica carinata HOM05D005524 ORTHO05D005392 8.2e-10 66.6 67 68.7
BcaB06g29217 Brassica carinata HOM05D005524 ORTHO05D005392 1.1e-09 66.2 67 67.2
BcaC02g07275 Brassica carinata HOM05D005524 ORTHO05D005392 1.1e-09 66.2 67 68.7
A04p31910 Brassica napus HOM05D005524 ORTHO05D005392 1.1e-09 66.2 67 68.7
C04p69380 Brassica napus HOM05D005524 ORTHO05D005392 1.1e-09 66.2 67 68.7
BolC4t28440H Brassica oleracea HOM05D005524 ORTHO05D005392 1.1e-09 66.2 67 68.7
BraA04t18649Z Brassica rapa HOM05D005524 ORTHO05D005392 1.1e-09 66.2 67 68.7
Potri.009G063600 Populus trichocarpa HOM05D005524 ORTHO05D005392 1.4e-09 65.9 67 68.7
BcaC07g40352 Brassica carinata HOM05D005524 ORTHO05D005392 1.8e-09 65.5 67 65.7
C08p33270 Brassica napus HOM05D005524 ORTHO05D005392 1.8e-09 65.5 67 65.7
BolC8t50929H Brassica oleracea HOM05D005524 ORTHO05D005392 1.8e-09 65.5 67 65.7
Sp4g24180 Schrenkiella parvula HOM05D005524 ORTHO05D005392 1.8e-09 65.5 67 68.7
BcaB02g07583 Brassica carinata HOM05D005524 ORTHO05D005392 2.4e-09 65.1 67 67.2
A09p50540 Brassica napus HOM05D005524 ORTHO05D005392 2.4e-09 65.1 67 65.7
BraA09t40508Z Brassica rapa HOM05D005524 ORTHO05D005392 2.4e-09 65.1 67 65.7
CSS0022867 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 2.4e-09 65.1 67 62.7
BcaC08g44863 Brassica carinata HOM05D005524 ORTHO05D005392 3.1e-09 64.7 67 67.2
BolC6t37629H Brassica oleracea HOM05D005524 ORTHO05D005392 3.1e-09 64.7 67 67.2
BcaB01g03426 Brassica carinata HOM05D005524 ORTHO05D005392 4.0e-09 64.3 67 65.7
BcaB02g08300 Brassica carinata HOM05D005524 ORTHO05D005392 4.0e-09 64.3 67 65.7
BcaB02g08302 Brassica carinata HOM05D005524 ORTHO05D005392 4.0e-09 64.3 67 65.7
BcaC02g09954 Brassica carinata HOM05D005524 ORTHO05D005392 5.3e-09 63.9 67 65.7
A04p02980 Brassica napus HOM05D005524 ORTHO05D005392 5.3e-09 63.9 67 65.7
C04p34740 Brassica napus HOM05D005524 ORTHO05D005392 5.3e-09 63.9 67 65.7
BolC4t25028H Brassica oleracea HOM05D005524 ORTHO05D005392 5.3e-09 63.9 67 65.7
BraA04t16021Z Brassica rapa HOM05D005524 ORTHO05D005392 5.3e-09 63.9 67 65.7
CSS0036301 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 5.3e-09 63.9 67 61.2
Carub.0004s2422 Capsella rubella HOM05D005524 ORTHO05D005392 5.3e-09 63.9 67 65.7
Hma1.2p1_0293F.1_g116270 Hydrangea macrophylla HOM05D005524 ORTHO05D005392 5.3e-09 63.9 67 61.2
A07p23640 Brassica napus HOM05D005524 ORTHO05D005392 9.0e-09 63.2 67 65.7
C06p24770 Brassica napus HOM05D005524 ORTHO05D005392 9.0e-09 63.2 67 65.7
BraA07t30018Z Brassica rapa HOM05D005524 ORTHO05D005392 9.0e-09 63.2 67 65.7
Sabra16G0164700 Salix brachista HOM05D005524 ORTHO05D005392 9.0e-09 63.2 67 65.7
BcaC07g40149 Brassica carinata HOM05D005524 ORTHO05D005392 1.5e-08 62.4 67 67.2
A03p23470 Brassica napus HOM05D005524 ORTHO05D005392 1.5e-08 62.4 67 65.7
BraA03t11563Z Brassica rapa HOM05D005524 ORTHO05D005392 1.5e-08 62.4 67 65.7
CSS0011241 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 1.5e-08 62.4 67 61.2
ClCG09G004270 Citrullus lanatus HOM05D005524 ORTHO05D005392 2.0e-08 62.0 67 62.7
Sed0016248 Sechium edule HOM05D005524 ORTHO05D005392 2.0e-08 62.0 67 61.2
BcaC01g05321 Brassica carinata HOM05D005524 ORTHO05D005392 3.4e-08 61.2 67 64.2
C03p27990 Brassica napus HOM05D005524 ORTHO05D005392 3.4e-08 61.2 67 64.2
BolC3t15170H Brassica oleracea HOM05D005524 ORTHO05D005392 3.4e-08 61.2 67 64.2
CiPaw.13G003600 Carya illinoinensis HOM05D005524 ORTHO05D005392 7.6e-08 60.1 67 62.7
ClCG10G012450 Citrullus lanatus HOM05D005524 ORTHO05D005392 7.6e-08 60.1 67 61.2
Potri.001G268800 Populus trichocarpa HOM05D005524 ORTHO05D005392 7.6e-08 60.1 67 62.7
TWI73G1008 Tripterygium wilfordii HOM05D005524 ORTHO05D005392 7.6e-08 60.1 67 62.7
Haze_03228 Corylus avellana HOM05D000430 ORTHO05D000305 1.0e-07 59.7 69 60.9
CSS0030443 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 1.7e-07 58.9 67 59.7
Aa31LG10G12450 Aethionema arabicum HOM05D005524 ORTHO05D005392 2.2e-07 58.5 67 61.2
TWI09G0988 Tripterygium wilfordii HOM05D005524 ORTHO05D005392 2.2e-07 58.5 67 62.7
Eucgr.H02490 Eucalyptus grandis HOM05D005524 ORTHO05D005392 2.9e-07 58.2 67 64.2
Gorai.007G358400 Gossypium raimondii HOM05D008862 ORTHO05D005392 2.9e-07 58.2 67 56.7
Gohir.D11G327300 Gossypium hirsutum HOM05D008862 ORTHO05D005392 3.8e-07 57.8 79 53.2
Thecc.01G412500 Theobroma cacao HOM05D005524 ORTHO05D005392 4.9e-07 57.4 67 59.7
Gorai.007G358200 Gossypium raimondii HOM05D008862 ORTHO05D005392 6.5e-07 57.0 79 51.9
CSS0022323 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 8.4e-07 56.6 67 61.2
CSS0036543 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 1.1e-06 56.2 67 61.2
MBI01_g27620_MAGBIO Magnolia biondii HOM05D005524 ORTHO05D005392 1.1e-06 56.2 67 64.2
Sed0014034 Sechium edule HOM05D005524 ORTHO05D005392 1.1e-06 56.2 67 59.7
Hma1.2p1_0621F.1_g190610 Hydrangea macrophylla HOM05D005524 ORTHO05D005392 1.4e-06 55.8 67 59.7
Phvul.001G137100 Phaseolus vulgaris HOM05D005524 ORTHO05D005392 1.4e-06 55.8 64 56.2
Sed0007200 Sechium edule HOM05D005524 ORTHO05D005392 1.4e-06 55.8 67 56.7
PSO384G3061 Papaver somniferum HOM05D005524 ORTHO05D005392 1.9e-06 55.5 68 57.4
Sed0003541 Sechium edule HOM05D005524 ORTHO05D005392 1.9e-06 55.5 67 58.2
COL.COLO4_28709 Corchorus olitorius HOM05D005524 ORTHO05D005392 2.5e-06 55.1 67 58.2
Manes.07G004601 Manihot esculenta HOM05D005524 ORTHO05D005392 2.5e-06 55.1 67 58.2
Cc02_g27760 Coffea canephora HOM05D005524 ORTHO05D005392 5.5e-06 53.9 67 56.7
Prupe.2G010700 Prunus persica HOM05D005524 ORTHO05D005392 5.5e-06 53.9 70 55.7
Lalb_Chr01g0015271 Lupinus albus HOM05D005524 ORTHO05D005392 7.1e-06 53.5 63 58.7
MBI04_g13621_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 7.1e-06 53.5 67 58.2
SHI24452 Sapria himalayana HOM05D005524 ORTHO05D005392 9.3e-06 53.1 65 58.5


User provided reference genes

Program Settings