Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.96 Acer truncatum HOM05D003489 ORTHO05D052389 5.0e-73 277.7 143 100.0
QL04p087224 Quercus lobata HOM05D003489 ORTHO05D004109 5.2e-14 81.6 41 95.1
GSVIVG01036762001 Vitis vinifera HOM05D003489 ORTHO05D004109 6.8e-14 81.3 41 95.1
Cfa019401 Carpinus fangiana HOM05D003489 ORTHO05D004109 8.9e-14 80.9 41 92.7
COL.COLO4_19751 Corchorus olitorius HOM05D003489 ORTHO05D004109 1.2e-13 80.5 41 90.2
MD05G1229700 Malus domestica HOM05D003489 ORTHO05D004109 1.2e-13 80.5 40 95.0
MD10G1209100 Malus domestica HOM05D003489 ORTHO05D004109 1.5e-13 80.1 41 92.7
Phvul.011G177250 Phaseolus vulgaris HOM05D003489 ORTHO05D004109 1.5e-13 80.1 63 61.9
Eucgr.F04461 Eucalyptus grandis HOM05D003489 ORTHO05D004109 2.0e-13 79.7 41 90.2
Lj3g0015370 Lotus japonicus HOM05D003489 ORTHO05D004109 2.6e-13 79.3 41 87.8
Manes.14G009200 Manihot esculenta HOM05D003489 ORTHO05D004109 2.6e-13 79.3 50 76.0
CANSAT80G0618 Cannabis sativa HOM05D003489 ORTHO05D004109 3.4e-13 79.0 41 90.2
PGR031G2340 Punica granatum HOM05D003489 ORTHO05D004109 3.4e-13 79.0 41 92.7
VMungo1127G1841 Vigna mungo HOM05D003489 ORTHO05D004109 3.4e-13 79.0 41 90.2
CiPaw.11G061000 Carya illinoinensis HOM05D003489 ORTHO05D004109 4.4e-13 78.6 40 92.5
Duzib268G0350 Durio zibethinus HOM05D003489 ORTHO05D004109 4.4e-13 78.6 41 87.8
Glyma.15G213100 Glycine max HOM05D003489 ORTHO05D004109 4.4e-13 78.6 41 90.2
Gohir.A08G232000 Gossypium hirsutum HOM05D003489 ORTHO05D004109 4.4e-13 78.6 41 87.8
Gohir.D08G252400 Gossypium hirsutum HOM05D003489 ORTHO05D004109 4.4e-13 78.6 41 87.8
Dinv19586 Davidia involucrata HOM05D003489 ORTHO05D004109 5.8e-13 78.2 41 90.2
Glyma.08G237400 Glycine max HOM05D003489 ORTHO05D004109 5.8e-13 78.2 41 90.2
HanXRQChr03g0078191 Helianthus annuus HOM05D003489 ORTHO05D004109 5.8e-13 78.2 41 87.8
Sc18g0003310 Simmondsia chinensis HOM05D003489 ORTHO05D004109 7.5e-13 77.8 43 83.7
Thecc.07G182300 Theobroma cacao HOM05D003489 ORTHO05D004109 7.5e-13 77.8 41 87.8
Ca_25908_v3 Cicer arietinum L. HOM05D003489 ORTHO05D004109 9.9e-13 77.4 41 87.8
Ca_30115_v3 Cicer arietinum L. HOM05D003489 ORTHO05D004109 9.9e-13 77.4 41 87.8
Cc05_g16430 Coffea canephora HOM05D003489 ORTHO05D004109 9.9e-13 77.4 41 90.2
Sabra12G0094800 Salix brachista HOM05D003489 ORTHO05D004109 9.9e-13 77.4 41 87.8
arahy.Tifrunner.gnm1.ann1.JYF968 Arachis hypogaea HOM05D003489 ORTHO05D004109 1.3e-12 77.0 41 85.4
arahy.Tifrunner.gnm1.ann1.T86MTP Arachis hypogaea HOM05D003489 ORTHO05D004109 1.3e-12 77.0 41 85.4
Haze_07801 Corylus avellana HOM05D003489 ORTHO05D004109 1.3e-12 77.0 41 87.8
DCAR_019918 Daucus carota HOM05D003489 ORTHO05D004109 1.3e-12 77.0 41 87.8
HanXRQChr03g0078181 Helianthus annuus HOM05D003489 ORTHO05D004109 1.3e-12 77.0 41 85.4
FvH4_3g14740 Fragaria vesca HOM05D003489 ORTHO05D004109 1.7e-12 76.6 40 87.5
FAN11G1209 Fragaria x ananassa HOM05D003489 ORTHO05D004109 1.7e-12 76.6 40 87.5
FAN21G0618 Fragaria x ananassa HOM05D003489 ORTHO05D004109 1.7e-12 76.6 40 87.5
FAN25G2342 Fragaria x ananassa HOM05D003489 ORTHO05D004109 1.7e-12 76.6 40 87.5
Lj2A13T24 Lonicera japonica HOM05D003489 ORTHO05D004109 1.7e-12 76.6 41 87.8
Potri.012G125900 Populus trichocarpa HOM05D003489 ORTHO05D004109 1.7e-12 76.6 41 87.8
Prupe.4G132600 Prunus persica HOM05D003489 ORTHO05D004109 1.7e-12 76.6 41 87.8
Rhsim04G0003000 Rhododendron simsii HOM05D003489 ORTHO05D004109 1.7e-12 76.6 41 87.8
vmacro09770 Vaccinium macrocarpon HOM05D003489 ORTHO05D004109 1.7e-12 76.6 41 90.2
COL.COLO4_17645 Corchorus olitorius HOM05D003489 ORTHO05D004109 2.2e-12 76.3 41 85.4
Gorai.004G269100 Gossypium raimondii HOM05D003489 ORTHO05D004109 2.2e-12 76.3 41 85.4
EL10Ac2g03234 Beta vulgaris HOM05D003489 ORTHO05D004109 2.9e-12 75.9 40 85.0
CSS0010976 Camellia sinensis var. sinensis HOM05D003489 ORTHO05D004109 3.7e-12 75.5 40 90.0
CANSAT80G0498 Cannabis sativa HOM05D003489 ORTHO05D004109 3.7e-12 75.5 42 83.3
RcHm_v2.0_Chr5g0024271 Rosa chinensis HOM05D003489 ORTHO05D004109 3.7e-12 75.5 40 87.5
Lsat_1_v5_gn_7_75601 Lactuca sativa HOM05D003489 ORTHO05D004109 4.9e-12 75.1 41 85.4
Nitab4.5_0006109g0040 Nicotiana tabacum HOM05D003489 ORTHO05D004109 4.9e-12 75.1 41 85.4
Peaxi162Scf00452g00336 Petunia axillaris HOM05D003489 ORTHO05D004109 4.9e-12 75.1 41 85.4
THA.LOC104826329 Tarenaya hassleriana HOM05D003489 ORTHO05D004109 4.9e-12 75.1 41 80.5
Migut.M01523 Erythranthe guttata HOM05D003489 ORTHO05D004109 6.4e-12 74.7 41 82.9
Gorai.009G353800 Gossypium raimondii HOM05D003489 ORTHO05D004109 6.4e-12 74.7 41 87.8
CARHR087330 Cardamine hirsuta HOM05D003489 ORTHO05D004109 8.3e-12 74.3 41 80.5
FvH4_3g12490 Fragaria vesca HOM05D003489 ORTHO05D004109 8.3e-12 74.3 41 82.9
FAN16G1927 Fragaria x ananassa HOM05D003489 ORTHO05D004109 8.3e-12 74.3 41 82.9
FAN21G3976 Fragaria x ananassa HOM05D003489 ORTHO05D004109 8.3e-12 74.3 41 82.9
FAN25G0305 Fragaria x ananassa HOM05D003489 ORTHO05D004109 8.3e-12 74.3 41 82.9
PSO675G0014 Papaver somniferum HOM05D003489 ORTHO05D004109 8.3e-12 74.3 41 80.5
Ciclev10005524m.g Citrus clementina HOM05D003489 ORTHO05D004109 1.1e-11 73.9 41 82.9
Potri.006G025400 Populus trichocarpa HOM05D003489 ORTHO05D004109 1.1e-11 73.9 42 78.6
Atru.chr10.457 Acer truncatum HOM05D003489 ORTHO05D004109 1.4e-11 73.6 41 82.9
Ah.10g033720 Amaranthus hybridus HOM05D003489 ORTHO05D004109 1.4e-11 73.6 40 82.5
MSTRG.16098 Avicennia marina HOM05D003489 ORTHO05D004109 1.4e-11 73.6 41 82.9
SGA_v2.0_scaffold47G17759 Striga asiatica HOM05D003489 ORTHO05D004109 1.4e-11 73.6 41 82.9
Thecc.02G007100 Theobroma cacao HOM05D003489 ORTHO05D004109 1.4e-11 73.6 41 82.9
TWI38G2359 Tripterygium wilfordii HOM05D003489 ORTHO05D004109 1.4e-11 73.6 40 82.5
BcaB06g25510 Brassica carinata HOM05D003489 ORTHO05D004109 1.9e-11 73.2 40 85.0
FAN16G2962 Fragaria x ananassa HOM05D003489 ORTHO05D004109 1.9e-11 73.2 40 82.5
MD05G1249900 Malus domestica HOM05D003489 ORTHO05D004109 1.9e-11 73.2 42 78.6
Medtr8g442750 Medicago truncatula HOM05D003489 ORTHO05D004109 1.9e-11 73.2 40 85.0
Nitab4.5_0000029g0290 Nicotiana tabacum HOM05D003489 ORTHO05D004109 1.9e-11 73.2 41 82.9
Nitab4.5_0000029g0300 Nicotiana tabacum HOM05D003489 ORTHO05D004109 1.9e-11 73.2 41 82.9
Oeu043715.1 Olea europaea HOM05D003489 ORTHO05D004109 1.9e-11 73.2 41 82.9
TAR626G0906 Trochodendron aralioides HOM05D003489 ORTHO05D004109 1.9e-11 73.2 63 60.3
GSVIVG01012113001 Vitis vinifera HOM05D003489 ORTHO05D004109 2.4e-11 72.8 41 82.9
ATR0697G295 Amborella trichopoda HOM05D003489 ORTHO05D004109 3.2e-11 72.4 41 80.5
Duzib248G1596 Durio zibethinus HOM05D003489 ORTHO05D004109 3.2e-11 72.4 41 80.5
PSO017G1717 Papaver somniferum HOM05D003489 ORTHO05D004109 3.2e-11 72.4 41 78.0
Sp3g10960 Schrenkiella parvula HOM05D003489 ORTHO05D004109 3.2e-11 72.4 40 80.0
Sed0005392 Sechium edule HOM05D003489 ORTHO05D004109 3.2e-11 72.4 42 81.0
AT3G12800 Arabidopsis thaliana HOM05D003489 ORTHO05D004109 4.1e-11 72.0 40 80.0
A05p36670 Brassica napus HOM05D001395 ORTHO05D004109 4.1e-11 72.0 40 82.5
C05p55120 Brassica napus HOM05D001395 ORTHO05D004109 4.1e-11 72.0 40 82.5
BolC5t34180H Brassica oleracea HOM05D001395 ORTHO05D004109 4.1e-11 72.0 40 82.5
BraA05t22470Z Brassica rapa HOM05D001395 ORTHO05D004109 4.1e-11 72.0 40 82.5
Haze_06095 Corylus avellana HOM05D003489 ORTHO05D004109 4.1e-11 72.0 56 62.5
Migut.H01667 Erythranthe guttata HOM05D003489 ORTHO05D004109 4.1e-11 72.0 41 80.5
PSO541G1044 Papaver somniferum HOM05D003489 ORTHO05D004109 4.1e-11 72.0 41 80.5
PSO675G9327 Papaver somniferum HOM05D003489 ORTHO05D004109 4.1e-11 72.0 41 80.5
Psat4g137680 Pisum sativum HOM05D003489 ORTHO05D004109 4.1e-11 72.0 40 82.5
RcHm_v2.0_Chr5g0020441 Rosa chinensis HOM05D003489 ORTHO05D004109 4.1e-11 72.0 41 80.5
A03p37810 Brassica napus HOM05D003489 ORTHO05D004109 5.4e-11 71.6 40 80.0
BraA03t12936Z Brassica rapa HOM05D003489 ORTHO05D004109 5.4e-11 71.6 40 80.0
Carub.0003s1216 Capsella rubella HOM05D003489 ORTHO05D004109 5.4e-11 71.6 40 77.5
Duzib132G1003 Durio zibethinus HOM05D003489 ORTHO05D004109 5.4e-11 71.6 41 80.5
Gohir.A12G047600 Gossypium hirsutum HOM05D003489 ORTHO05D004109 5.4e-11 71.6 41 78.0
Gohir.D12G046300 Gossypium hirsutum HOM05D003489 ORTHO05D004109 5.4e-11 71.6 41 78.0
Gorai.008G049000 Gossypium raimondii HOM05D003489 ORTHO05D004109 5.4e-11 71.6 41 78.0
PSO675G1648 Papaver somniferum HOM05D003489 ORTHO05D004109 5.4e-11 71.6 41 78.0
PSO675G6571 Papaver somniferum HOM05D003489 ORTHO05D004109 5.4e-11 71.6 41 75.6
unitig_578.g16335 Utricularia gibba HOM05D003489 ORTHO05D004109 5.4e-11 71.6 41 80.5
Aa31LG8G80 Aethionema arabicum HOM05D003489 ORTHO05D004109 7.1e-11 71.2 40 77.5
AL3G24480 Arabidopsis lyrata HOM05D003489 ORTHO05D004109 7.1e-11 71.2 40 77.5
BcaB04g18721 Brassica carinata HOM05D003489 ORTHO05D004109 7.1e-11 71.2 40 80.0
BcaC01g04035 Brassica carinata HOM05D003489 ORTHO05D004109 7.1e-11 71.2 40 77.5
C03p45870 Brassica napus HOM05D001395 ORTHO05D004109 7.1e-11 71.2 40 77.5
BolC3t16863H Brassica oleracea HOM05D003489 ORTHO05D004109 7.1e-11 71.2 40 77.5
Hma1.2p1_0151F.1_g067260 Hydrangea macrophylla HOM05D003489 ORTHO05D004109 7.1e-11 71.2 41 82.9
MBI18_g11461_MAGBIO Magnolia biondii HOM05D003489 ORTHO05D004109 7.1e-11 71.2 41 80.5
QL11p013743 Quercus lobata HOM05D003489 ORTHO05D004109 7.1e-11 71.2 41 82.9
TAR624G0253 Trochodendron aralioides HOM05D003489 ORTHO05D004109 7.1e-11 71.2 41 80.5
Gohir.A04G050800 Gossypium hirsutum HOM05D003489 ORTHO05D004109 9.2e-11 70.9 41 82.9
Nn7g38230 Nelumbo nucifera HOM05D003489 ORTHO05D004109 9.2e-11 70.9 40 80.0
Sp3g10955 Schrenkiella parvula HOM05D003489 ORTHO05D004109 9.2e-11 70.9 40 80.0
Sed0021670 Sechium edule HOM05D003489 ORTHO05D004109 9.2e-11 70.9 42 81.0
TPR.G9418 Trifolium pratense HOM05D003489 ORTHO05D004109 9.2e-11 70.9 40 80.0
CiPaw.10G063600 Carya illinoinensis HOM05D003489 ORTHO05D004109 1.2e-10 70.5 41 78.0
AUR62032089 Chenopodium quinoa HOM05D003489 ORTHO05D004109 1.2e-10 70.5 40 77.5
ECA240G1189 Erigeron canadensis HOM05D003489 ORTHO05D004109 1.6e-10 70.1 41 80.5
Thhalv10021233m.g Eutrema salsugineum HOM05D003489 ORTHO05D004109 1.6e-10 70.1 40 77.5
Lalb_Chr19g0133211 Lupinus albus HOM05D003489 ORTHO05D004109 1.6e-10 70.1 42 71.4
Psat4g137640 Pisum sativum HOM05D003489 ORTHO05D004109 1.6e-10 70.1 40 80.0
Prupe.4G113900 Prunus persica HOM05D003489 ORTHO05D004109 1.6e-10 70.1 41 78.0
PGR004G2417 Punica granatum HOM05D003489 ORTHO05D004109 1.6e-10 70.1 40 82.5
CAN.G943.55 Capsicum annuum HOM05D003489 ORTHO05D004109 2.1e-10 69.7 41 80.5
Cpa.g.sc30.144 Carica papaya HOM05D003489 ORTHO05D004109 2.1e-10 69.7 42 76.2
SalBow8G4095 Salvia bowleyana HOM05D003489 ORTHO05D004109 2.1e-10 69.7 41 78.0
Solyc07g066630.4 Solanum lycopersicum HOM05D003489 ORTHO05D004109 2.1e-10 69.7 41 80.5
Sopen07g034780 Solanum pennellii HOM05D003489 ORTHO05D004109 2.1e-10 69.7 41 80.5
vmacro23254 Vaccinium macrocarpon HOM05D003489 ORTHO05D004109 2.1e-10 69.7 41 78.0
Ciclev10016100m.g Citrus clementina HOM05D003489 ORTHO05D004109 2.7e-10 69.3 41 78.0
Sabra06G0018700 Salix brachista HOM05D003489 ORTHO05D004109 2.7e-10 69.3 41 78.0
ClCG09G022700 Citrullus lanatus HOM05D003489 ORTHO05D004109 3.5e-10 68.9 42 78.6
CSS0044390 Camellia sinensis var. sinensis HOM05D003489 ORTHO05D004109 4.6e-10 68.6 41 75.6
Dinv09060 Davidia involucrata HOM05D003489 ORTHO05D004109 6.0e-10 68.2 41 75.6
Cfa000694 Carpinus fangiana HOM05D003489 ORTHO05D004109 7.8e-10 67.8 41 73.2
Actinidia22416 Actinidia chinensis HOM05D003489 ORTHO05D004109 1.0e-09 67.4 41 75.6
DCAR_007785 Daucus carota HOM05D032355 ORTHO05D004109 1.0e-09 67.4 41 70.7
Lj2A345T27 Lonicera japonica HOM05D003489 ORTHO05D004109 1.3e-09 67.0 40 80.0
Manes.03G069001 Manihot esculenta HOM05D003489 ORTHO05D004109 1.3e-09 67.0 41 70.7
Oeu019723.1 Olea europaea HOM05D003489 ORTHO05D004109 1.3e-09 67.0 41 75.6
Os04g0614000 Oryza sativa ssp. japonica HOM05D003489 ORTHO05D004109 1.3e-09 67.0 40 77.5
HPP92_026361 Vanilla planifolia HOM05D003489 ORTHO05D004109 1.3e-09 67.0 41 75.6
CSS0006688 Camellia sinensis var. sinensis HOM05D003489 ORTHO05D004109 2.3e-09 66.2 56 57.1
MELO3C012608.2 Cucumis melo HOM05D003489 ORTHO05D004109 2.3e-09 66.2 41 78.0
SEGI_41285 Sequoiadendron giganteum HOM05D003489 ORTHO05D004109 2.3e-09 66.2 41 75.6
CDE06G1011 Ceratophyllum demersum HOM05D003489 ORTHO05D004109 6.6e-09 64.7 41 70.7
CsaV3_7G022900 Cucumis sativus L. HOM05D003489 ORTHO05D004109 6.6e-09 64.7 42 73.8
PSO673G0003 Papaver somniferum HOM05D003489 ORTHO05D004109 6.6e-09 64.7 41 70.7
ECA246G5026 Erigeron canadensis HOM05D003489 ORTHO05D004109 1.1e-08 63.9 41 70.7
HanXRQChr12g0381551 Helianthus annuus HOM05D003489 ORTHO05D004109 1.5e-08 63.5 41 68.3
Hma1.2p1_0181F.1_g080070 Hydrangea macrophylla HOM05D003489 ORTHO05D004109 1.5e-08 63.5 41 70.7
Lsat_1_v5_gn_3_107180 Lactuca sativa HOM05D003489 ORTHO05D004109 1.5e-08 63.5 41 68.3
AagrBONN_evm.TU.Sc2ySwM_117.344 Anthoceros agrestis HOM05D003489 ORTHO05D004109 1.9e-08 63.2 40 75.0
Zm00001eb070900 Zea mays HOM05D003489 ORTHO05D004109 2.5e-08 62.8 40 72.5
Aqoxy1G01416 Aquilegia oxysepala HOM05D003489 ORTHO05D004109 5.6e-08 61.6 41 70.7
Eucgr.D00036 Eucalyptus grandis HOM05D003489 ORTHO05D004109 7.3e-08 61.2 41 68.3
Oeu034981.1 Olea europaea HOM05D003489 ORTHO05D004109 9.5e-08 60.8 36 75.0
Pp3c20_21940 Physcomitrium patens HOM05D003489 ORTHO05D004109 2.1e-07 59.7 40 70.0
Thecc.08G124400 Theobroma cacao HOM05D003489 ORTHO05D004109 6.2e-07 58.2 31 83.9
Pp3c23_13630 Physcomitrium patens HOM05D003489 ORTHO05D004109 8.1e-07 57.8 41 65.9
SMO116G0107 Selaginella moellendorffii HOM05D003489 ORTHO05D004109 8.1e-07 57.8 40 65.0
Duzib052G0366 Durio zibethinus HOM05D003489 ORTHO05D004109 1.8e-06 56.6 36 69.4
Mapoly0057s0046 Marchantia polymorpha HOM05D003489 ORTHO05D004109 2.4e-06 56.2 40 62.5


User provided reference genes

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