Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.910 Acer truncatum HOM05D001659 ORTHO05D001659 1.3e-45 186.0 92 100.0
Atru.chr6.2104 Acer truncatum HOM05D001659 ORTHO05D001659 1.4e-31 139.4 84 84.5
HanXRQChr13g0411131 Helianthus annuus HOM05D001659 ORTHO05D001659 1.9e-09 65.9 76 44.7
Sabra03G0071000 Salix brachista HOM05D001659 ORTHO05D001659 2.5e-09 65.5 93 41.9
Eucgr.E01214 Eucalyptus grandis HOM05D001659 ORTHO05D001659 3.3e-09 65.1 93 41.9
Thecc.03G324800 Theobroma cacao HOM05D001659 ORTHO05D001659 7.3e-09 63.9 86 45.3
Potri.003G103900 Populus trichocarpa HOM05D001659 ORTHO05D001659 1.6e-08 62.8 97 41.2
Gohir.A04G113700 Gossypium hirsutum HOM05D001659 ORTHO05D001659 2.8e-08 62.0 81 45.7
SGA_v2.0_scaffold111G31355 Striga asiatica HOM05D001659 ORTHO05D001659 2.8e-08 62.0 72 41.7
Lsat_1_v5_gn_5_55281 Lactuca sativa HOM05D001659 ORTHO05D001659 6.1e-08 60.8 102 36.3
vmacro09263 Vaccinium macrocarpon HOM05D001659 ORTHO05D001659 6.1e-08 60.8 109 37.6
Haze_10715 Corylus avellana HOM05D001659 ORTHO05D001659 8.0e-08 60.5 71 43.7
Oeu046793.1 Olea europaea HOM05D001659 ORTHO05D001659 1.0e-07 60.1 48 58.3
Cc08_g05330 Coffea canephora HOM05D001659 ORTHO05D001659 1.4e-07 59.7 61 47.5
Gohir.D04G155000 Gossypium hirsutum HOM05D001659 ORTHO05D001659 1.4e-07 59.7 81 44.4
Gorai.012G142200 Gossypium raimondii HOM05D001659 ORTHO05D001659 1.4e-07 59.7 81 44.4
GSVIVG01022812001 Vitis vinifera HOM05D001659 ORTHO05D001659 1.4e-07 59.7 93 39.8
ECA234G3786 Erigeron canadensis HOM05D001659 ORTHO05D001659 1.8e-07 59.3 56 50.0
arahy.Tifrunner.gnm1.ann1.21N9MM Arachis hypogaea HOM05D001659 ORTHO05D001659 2.3e-07 58.9 79 36.7
arahy.Tifrunner.gnm1.ann1.E2AJGQ Arachis hypogaea HOM05D001659 ORTHO05D001659 2.3e-07 58.9 79 36.7
Cfa005596 Carpinus fangiana HOM05D001659 ORTHO05D001659 2.3e-07 58.9 71 42.3
PGSC0003DMG400007614 Solanum tuberosum HOM05D001659 ORTHO05D001659 2.3e-07 58.9 123 34.1
Aqoxy5G03141 Aquilegia oxysepala HOM05D001659 ORTHO05D001659 3.0e-07 58.5 107 35.5
BcaB04g19198 Brassica carinata HOM05D001659 ORTHO05D001659 4.0e-07 58.2 107 33.6
BraA03t13420Z Brassica rapa HOM05D001659 ORTHO05D001659 4.0e-07 58.2 114 32.5
MSTRG.1764 Avicennia marina HOM05D001659 ORTHO05D001659 5.2e-07 57.8 54 46.3
FAN07G0088 Fragaria x ananassa HOM05D001659 ORTHO05D001659 5.2e-07 57.8 56 46.4
BcaC01g03448 Brassica carinata HOM05D001659 ORTHO05D001659 6.8e-07 57.4 112 33.9
C03p52460 Brassica napus HOM05D001659 ORTHO05D001659 6.8e-07 57.4 112 33.9
BolC3t17517H Brassica oleracea HOM05D001659 ORTHO05D001659 6.8e-07 57.4 112 33.9
ECA240G0626 Erigeron canadensis HOM05D001659 ORTHO05D001659 6.8e-07 57.4 97 34.0
Sopen08g024200 Solanum pennellii HOM05D001659 ORTHO05D001659 6.8e-07 57.4 73 42.5
Atru.chr6.2103 Acer truncatum HOM05D001659 ORTHO05D001659 8.9e-07 57.0 33 72.7
BolC5t32845H Brassica oleracea HOM05D001659 ORTHO05D001659 8.9e-07 57.0 106 34.9
Carub.0005s0606 Capsella rubella HOM05D001659 ORTHO05D001659 8.9e-07 57.0 64 42.2
Sc18g0006900 Simmondsia chinensis HOM05D001659 ORTHO05D001659 8.9e-07 57.0 58 41.4
Actinidia32781 Actinidia chinensis HOM05D001659 ORTHO05D001659 1.2e-06 56.6 92 38.0
Nn3g19263 Nelumbo nucifera HOM05D001659 ORTHO05D001659 1.2e-06 56.6 105 38.1
Psat7g098200 Pisum sativum HOM05D001659 ORTHO05D001659 1.2e-06 56.6 62 46.8
arahy.Tifrunner.gnm1.ann1.6YT2J6 Arachis hypogaea HOM05D001659 ORTHO05D001659 1.5e-06 56.2 59 44.1
DCAR_028361 Daucus carota HOM05D001659 ORTHO05D001659 1.5e-06 56.2 78 41.0
Thhalv10009342m.g Eutrema salsugineum HOM05D001659 ORTHO05D001659 1.5e-06 56.2 55 43.6
Hma1.2p1_0199F.1_g085590 Hydrangea macrophylla HOM05D001659 ORTHO05D001659 1.5e-06 56.2 114 33.3
Potri.015G019800 Populus trichocarpa HOM05D001659 ORTHO05D001659 1.5e-06 56.2 55 45.5
PGR042G1201 Punica granatum HOM05D001659 ORTHO05D001659 1.5e-06 56.2 46 63.0
Actinidia14737 Actinidia chinensis HOM05D001659 ORTHO05D001659 2.0e-06 55.8 92 42.4
A03p42730 Brassica napus HOM05D001659 ORTHO05D001659 2.0e-06 55.8 110 34.5
CSS0049680 Camellia sinensis var. sinensis HOM05D001659 ORTHO05D001659 2.0e-06 55.8 70 45.7
FvH4_4g05930 Fragaria vesca HOM05D001659 ORTHO05D001659 2.0e-06 55.8 57 42.1
FAN12G0150 Fragaria x ananassa HOM05D001659 ORTHO05D001659 2.0e-06 55.8 57 42.1
Potri.012G001500 Populus trichocarpa HOM05D001659 ORTHO05D001659 2.0e-06 55.8 65 40.0
arahy.Tifrunner.gnm1.ann1.R33HCR Arachis hypogaea HOM05D001659 ORTHO05D001659 2.6e-06 55.5 40 55.0
FvH4_5g24160 Fragaria vesca HOM05D001659 ORTHO05D001659 2.6e-06 55.5 79 34.2
FAN18G0317 Fragaria x ananassa HOM05D001659 ORTHO05D001659 2.6e-06 55.5 79 34.2
PGR042G1445 Punica granatum HOM05D001659 ORTHO05D001659 2.6e-06 55.5 102 41.2
Sp1g28550 Schrenkiella parvula HOM05D001659 ORTHO05D001659 2.6e-06 55.5 55 40.0
TWI59G1131 Tripterygium wilfordii HOM05D001659 ORTHO05D001659 2.6e-06 55.5 68 45.6
Aqoxy4G00776 Aquilegia oxysepala HOM05D001659 ORTHO05D001659 3.4e-06 55.1 51 47.1
AL3G36640 Arabidopsis lyrata HOM05D001659 ORTHO05D001659 3.4e-06 55.1 51 43.1
BraA05t21380Z Brassica rapa HOM05D001659 ORTHO05D001659 3.4e-06 55.1 55 38.2
Ca_18354_v3 Cicer arietinum L. HOM05D001659 ORTHO05D001659 3.4e-06 55.1 61 45.9
Rhsim07G0139700 Rhododendron simsii HOM05D001659 ORTHO05D001659 3.4e-06 55.1 110 38.2
Sabra12G0019800 Salix brachista HOM05D001659 ORTHO05D001659 3.4e-06 55.1 72 40.3
AL3G36650 Arabidopsis lyrata HOM05D001659 ORTHO05D001659 4.4e-06 54.7 110 30.0
arahy.Tifrunner.gnm1.ann1.BF7YHD Arachis hypogaea HOM05D001659 ORTHO05D001659 4.4e-06 54.7 59 42.4
arahy.Tifrunner.gnm1.ann1.J9518S Arachis hypogaea HOM05D001659 ORTHO05D001659 4.4e-06 54.7 35 65.7
arahy.Tifrunner.gnm1.ann1.KN5WZ8 Arachis hypogaea HOM05D001659 ORTHO05D001659 4.4e-06 54.7 35 65.7
MSTRG.25737 Avicennia marina HOM05D001659 ORTHO05D001659 4.4e-06 54.7 89 39.3
RcHm_v2.0_Chr4g0397111 Rosa chinensis HOM05D001659 ORTHO05D001659 4.4e-06 54.7 59 40.7
RcHm_v2.0_Chr7g0213931 Rosa chinensis HOM05D001659 ORTHO05D001659 4.4e-06 54.7 77 35.1
Aa31LG2G13660 Aethionema arabicum HOM05D001659 ORTHO05D001659 5.7e-06 54.3 42 54.8
COL.COLO4_06967 Corchorus olitorius HOM05D001659 ORTHO05D001659 5.7e-06 54.3 56 48.2
Duzib052G0577 Durio zibethinus HOM05D001659 ORTHO05D001659 5.7e-06 54.3 85 37.6
FAN13G0295 Fragaria x ananassa HOM05D001659 ORTHO05D001659 5.7e-06 54.3 79 32.9
Glyma.04G123800 Glycine max HOM05D001659 ORTHO05D001659 5.7e-06 54.3 58 48.3
Nitab4.5_0000030g0350 Nicotiana tabacum HOM05D001659 ORTHO05D001659 5.7e-06 54.3 80 38.8
PGR142G2909 Punica granatum HOM05D001659 ORTHO05D001659 5.7e-06 54.3 67 37.3
Sed0020415 Sechium edule HOM05D001659 ORTHO05D001659 5.7e-06 54.3 58 46.6
AL5G17040 Arabidopsis lyrata HOM05D001659 ORTHO05D001659 7.5e-06 53.9 50 44.0
BcaB06g26337 Brassica carinata HOM05D001659 ORTHO05D001659 7.5e-06 53.9 128 27.3
CARHR031720 Cardamine hirsuta HOM05D001659 ORTHO05D001659 7.5e-06 53.9 55 41.8
Cpa.g.sc8.29 Carica papaya HOM05D001659 ORTHO05D001659 7.5e-06 53.9 61 44.3
FAN07G0217 Fragaria x ananassa HOM05D001659 ORTHO05D001659 7.5e-06 53.9 46 50.0
FAN17G3134 Fragaria x ananassa HOM05D001659 ORTHO05D001659 7.5e-06 53.9 57 42.1
Mapoly0016s0007 Marchantia polymorpha HOM05D001659 ORTHO05D001659 7.5e-06 53.9 56 41.1
Psat2g058520 Pisum sativum HOM05D001659 ORTHO05D001659 7.5e-06 53.9 81 34.6
Thecc.02G138600 Theobroma cacao HOM05D001659 ORTHO05D001659 7.5e-06 53.9 63 47.6
TAR374G0253 Trochodendron aralioides HOM05D001659 ORTHO05D001659 7.5e-06 53.9 55 58.2
vmacro00076 Vaccinium macrocarpon HOM05D001659 ORTHO05D001659 7.5e-06 53.9 77 44.2
Aa31LG8G8900 Aethionema arabicum HOM05D001659 ORTHO05D001659 9.8e-06 53.5 131 29.0
BcaC05g27876 Brassica carinata HOM05D001659 ORTHO05D001659 9.8e-06 53.5 55 38.2
BcaC05g28080 Brassica carinata HOM05D001659 ORTHO05D001659 9.8e-06 53.5 46 47.8
C05p38810 Brassica napus HOM05D001659 ORTHO05D001659 9.8e-06 53.5 55 38.2
C05p41020 Brassica napus HOM05D001659 ORTHO05D001659 9.8e-06 53.5 46 47.8
BolC5t32621H Brassica oleracea HOM05D001659 ORTHO05D001659 9.8e-06 53.5 55 38.2
Lj7A163T40 Lonicera japonica HOM05D001659 ORTHO05D001659 9.8e-06 53.5 39 53.8
Nn5g30113 Nelumbo nucifera HOM05D001659 ORTHO05D001659 9.8e-06 53.5 61 47.5
Phvul.002G127100 Phaseolus vulgaris HOM05D001659 ORTHO05D001659 9.8e-06 53.5 55 43.6
Rhsim11G0034600 Rhododendron simsii HOM05D001659 ORTHO05D001659 9.8e-06 53.5 82 40.2
Sp3g20140 Schrenkiella parvula HOM05D001659 ORTHO05D001659 9.8e-06 53.5 126 28.6
Sed0003932 Sechium edule HOM05D001659 ORTHO05D001659 9.8e-06 53.5 66 39.4
TWI23G1163 Tripterygium wilfordii HOM05D001659 ORTHO05D001659 9.8e-06 53.5 68 45.6
TAR381G0727 Trochodendron aralioides HOM05D001659 ORTHO05D001659 9.8e-06 53.5 42 47.6


User provided reference genes

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