Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.817 Acer truncatum HOM05D004498 ORTHO05D005300 2.0e-300 1035.0 532 100.0
Ciclev10004737m.g Citrus clementina HOM05D004498 ORTHO05D005300 1.1e-239 833.2 516 82.0
Potri.001G126200 Populus trichocarpa HOM05D004498 ORTHO05D005300 2.2e-238 828.9 517 80.5
QL09p005249 Quercus lobata HOM05D004498 ORTHO05D005300 6.3e-238 827.4 520 79.4
CiPaw.03G020300 Carya illinoinensis HOM05D004498 ORTHO05D005300 1.3e-235 819.7 533 77.7
Hma1.2p1_0432F.1_g151900 Hydrangea macrophylla HOM05D004498 ORTHO05D005300 2.0e-231 805.8 533 76.9
Manes.14G037200 Manihot esculenta HOM05D004498 ORTHO05D005300 2.5e-231 805.4 508 79.5
COL.COLO4_14097 Corchorus olitorius HOM05D004498 ORTHO05D005300 6.3e-230 800.8 529 76.7
Cfa008145 Carpinus fangiana HOM05D004498 ORTHO05D005300 5.3e-229 797.7 528 76.1
Thecc.03G153100 Theobroma cacao HOM05D004498 ORTHO05D005300 1.5e-228 796.2 520 77.5
Gorai.008G215300 Gossypium raimondii HOM05D004498 ORTHO05D005300 2.0e-228 795.8 534 76.0
Gohir.D12G200100 Gossypium hirsutum HOM05D004498 ORTHO05D005300 7.7e-228 793.9 536 76.1
TAR375G0984 Trochodendron aralioides HOM05D004498 ORTHO05D005300 9.4e-226 786.9 543 74.4
Sabra01G0097300 Salix brachista HOM05D004498 ORTHO05D005300 6.1e-225 784.3 591 69.5
Ca_02786_v3 Cicer arietinum L. HOM05D004498 ORTHO05D005300 1.1e-221 773.5 520 74.6
Lalb_Chr04g0258171 Lupinus albus HOM05D004498 ORTHO05D005300 2.4e-221 772.3 520 74.2
THA.LOC104819414 Tarenaya hassleriana HOM05D004498 ORTHO05D005300 2.4e-221 772.3 519 75.0
PSO210G1345 Papaver somniferum HOM05D004498 ORTHO05D005300 3.1e-221 771.9 527 73.6
Psat6g142360 Pisum sativum HOM05D004498 ORTHO05D005300 1.5e-220 769.6 519 74.4
Psat6g116600 Pisum sativum HOM05D004498 ORTHO05D005300 2.0e-220 769.2 520 73.8
Lj3g0015680 Lotus japonicus HOM05D004498 ORTHO05D005300 2.6e-220 768.8 520 74.4
Actinidia24991 Actinidia chinensis HOM05D004498 ORTHO05D005300 2.9e-219 765.4 501 76.6
Medtr4g036550 Medicago truncatula HOM05D004498 ORTHO05D005300 6.5e-219 764.2 517 74.5
Thhalv10013248m.g Eutrema salsugineum HOM05D004498 ORTHO05D005300 1.1e-218 763.5 520 73.7
TPR.G3665 Trifolium pratense HOM05D004498 ORTHO05D005300 1.5e-218 763.1 520 73.3
PSO210G0611 Papaver somniferum HOM05D004498 ORTHO05D005300 1.9e-218 762.7 527 73.2
ECA233G4878 Erigeron canadensis HOM05D004498 ORTHO05D005300 2.5e-218 762.3 515 74.2
Eucgr.G03077 Eucalyptus grandis HOM05D004498 ORTHO05D005300 2.5e-218 762.3 519 73.4
Aqoxy3G03912 Aquilegia oxysepala HOM05D004498 ORTHO05D005300 9.4e-218 760.4 532 72.9
Rhsim03G0165600 Rhododendron simsii HOM05D004498 ORTHO05D005300 3.6e-217 758.4 544 71.3
Sp6g35240 Schrenkiella parvula HOM05D004498 ORTHO05D005300 4.7e-217 758.1 517 72.7
Sed0003630 Sechium edule HOM05D004498 ORTHO05D005300 4.7e-217 758.1 524 72.7
Glyma.09G230400 Glycine max HOM05D004498 ORTHO05D005300 6.1e-217 757.7 520 74.6
Migut.D02110 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.8e-216 756.1 525 73.0
Phvul.011G007100 Phaseolus vulgaris HOM05D004498 ORTHO05D005300 5.2e-216 754.6 520 71.5
Solyc05g051630.4 Solanum lycopersicum HOM05D004498 ORTHO05D005300 1.5e-215 753.1 525 74.3
Cc02_g04430 Coffea canephora HOM05D004498 ORTHO05D005300 4.4e-215 751.5 535 69.9
Sc15g0000230 Simmondsia chinensis HOM05D004498 ORTHO05D005300 5.7e-215 751.1 532 72.4
CsaV3_4G004040 Cucumis sativus L. HOM05D004498 ORTHO05D005300 2.2e-214 749.2 518 72.4
BcaC03g13193 Brassica carinata HOM05D004498 ORTHO05D005300 1.4e-213 746.5 520 72.3
Migut.G01103 Erythranthe guttata HOM05D004498 ORTHO05D005300 4.1e-213 745.0 527 71.3
BcaB05g21603 Brassica carinata HOM05D004498 ORTHO05D005300 5.3e-213 744.6 520 72.1
BcaC06g32495 Brassica carinata HOM05D004498 ORTHO05D005300 4.5e-212 741.5 516 72.7
Prupe.6G033300 Prunus persica HOM05D004498 ORTHO05D005300 5.9e-212 741.1 532 71.6
Carub.0006s0661 Capsella rubella HOM05D004498 ORTHO05D005300 1.7e-211 739.6 519 70.9
MD11G1042200 Malus domestica HOM05D004498 ORTHO05D005300 2.9e-211 738.8 532 71.8
Gohir.A12G197600 Gossypium hirsutum HOM05D004498 ORTHO05D005300 6.5e-211 737.6 500 75.8
A10p29360 Brassica napus HOM05D004498 ORTHO05D005300 1.1e-210 736.9 531 70.6
AL6G17950 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 1.5e-210 736.5 522 70.3
CAN.G937.4 Capsicum annuum HOM05D004498 ORTHO05D005300 1.5e-210 736.5 514 73.2
BraA10t44979Z Brassica rapa HOM05D004498 ORTHO05D005300 2.5e-210 735.7 531 70.6
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 2.7e-209 732.3 514 71.8
ClCG07G016840 Citrullus lanatus HOM05D004498 ORTHO05D005300 3.6e-209 731.9 494 74.5
TWI23G0902 Tripterygium wilfordii HOM05D004498 ORTHO05D005300 4.7e-209 731.5 474 78.5
Dinv16848 Davidia involucrata HOM05D004498 ORTHO05D005300 1.2e-204 716.8 526 71.3
AT5G07630 Arabidopsis thaliana HOM05D004498 ORTHO05D005300 3.5e-204 715.3 522 68.4
HanXRQChr05g0142551 Helianthus annuus HOM05D004498 ORTHO05D005300 1.5e-202 709.9 503 71.8
Glyma.12G006200 Glycine max HOM05D004498 ORTHO05D005300 4.0e-200 701.8 476 74.4
BraA02t04927Z Brassica rapa HOM05D004498 ORTHO05D005300 1.2e-199 700.3 624 59.8
BolC2t06286H Brassica oleracea HOM05D004498 ORTHO05D005300 3.4e-199 698.7 635 59.5
Duzib084G1021 Durio zibethinus HOM05D004498 ORTHO05D005300 5.4e-197 691.4 532 69.2
Manes.06G133200 Manihot esculenta HOM05D004498 ORTHO05D005300 1.9e-194 682.9 519 69.7
Aa31LG3G18790 Aethionema arabicum HOM05D004498 ORTHO05D005300 4.2e-194 681.8 514 67.1
CSS0042388 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 6.1e-193 677.9 445 77.5
Carub.0003s0947 Capsella rubella HOM05D004498 ORTHO05D005300 1.0e-192 677.2 516 68.0
PGR119G0143 Punica granatum HOM05D004498 ORTHO05D005300 9.8e-191 670.6 466 74.7
FvH4_3g41750 Fragaria vesca HOM05D004498 ORTHO05D005300 1.3e-190 670.2 545 65.0
RcHm_v2.0_Chr5g0074831 Rosa chinensis HOM05D004498 ORTHO05D005300 3.2e-189 665.6 520 65.8
Ah.15g094140 Amaranthus hybridus HOM05D004498 ORTHO05D005300 2.7e-188 662.5 549 62.5
GSVIVG01014038001 Vitis vinifera HOM05D004498 ORTHO05D005300 2.7e-188 662.5 524 65.1
Nitab4.5_0001187g0110 Nicotiana tabacum HOM05D004498 ORTHO05D005300 4.5e-188 661.8 511 69.3
FAN11G1420 Fragaria x ananassa HOM05D004498 ORTHO05D005300 6.6e-187 657.9 560 63.0
Lj8A44G33 Lonicera japonica HOM05D004498 ORTHO05D005300 3.4e-183 645.6 446 74.2
SalBow7G0508 Salvia bowleyana HOM05D004498 ORTHO05D005300 7.5e-183 644.4 432 75.2
AL3G21620 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 6.4e-182 641.3 483 68.9
Hund20838 Selenicereus undatus HOM05D004498 ORTHO05D005300 7.8e-180 634.4 501 65.7
DCAR_009449 Daucus carota HOM05D004498 ORTHO05D005300 1.2e-175 620.5 530 61.3
FAN16G2392 Fragaria x ananassa HOM05D004498 ORTHO05D005300 5.8e-175 618.2 545 61.8
Lsat_1_v5_gn_8_10281 Lactuca sativa HOM05D004498 ORTHO05D005300 1.3e-174 617.1 435 70.8
Nn1g09651 Nelumbo nucifera HOM05D004498 ORTHO05D005300 1.7e-174 616.7 447 71.4
MELO3C017661.2 Cucumis melo HOM05D004498 ORTHO05D005300 2.9e-174 615.9 415 74.7
vmacro22807 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 4.9e-174 615.1 501 65.5
Sopen05g030080 Solanum pennellii HOM05D004498 ORTHO05D005300 4.3e-170 602.1 428 72.9
FAN25G1514 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.1e-168 597.4 583 57.3
arahy.Tifrunner.gnm1.ann1.LBI7WJ Arachis hypogaea HOM05D004498 ORTHO05D005300 1.2e-167 594.0 418 72.2
AUR62009833 Chenopodium quinoa HOM05D004498 ORTHO05D005300 1.3e-166 590.5 499 61.3
EL10Ac7g16351 Beta vulgaris HOM05D004498 ORTHO05D005300 1.9e-162 576.6 581 55.9
arahy.Tifrunner.gnm1.ann1.V9VPQR Arachis hypogaea HOM05D004498 ORTHO05D005300 7.3e-162 574.7 446 66.8
Migut.G01144 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.2e-161 573.9 387 74.7
SGA_v2.0_scaffold115G32141 Striga asiatica HOM05D004498 ORTHO05D005300 2.8e-161 572.8 567 56.1
ATR0745G086 Amborella trichopoda HOM05D004498 ORTHO05D005300 4.0e-160 568.9 524 57.4
SHI13988 Sapria himalayana HOM05D004498 ORTHO05D005300 3.2e-157 559.3 497 60.4
HPP92_003455 Vanilla planifolia HOM05D004498 ORTHO05D005300 3.2e-157 559.3 510 58.8
Peaxi162Scf00167g00733 Petunia axillaris HOM05D004498 ORTHO05D005300 3.4e-151 539.3 424 66.5
FAN21G3639 Fragaria x ananassa HOM05D004498 ORTHO05D005300 9.9e-151 537.7 461 62.3
unitig_578.g16611 Utricularia gibba HOM05D004498 ORTHO05D005300 6.0e-148 528.5 450 59.6
BolC9t59715H Brassica oleracea HOM05D004498 ORTHO05D005300 1.5e-146 523.9 472 60.0
C09p69720 Brassica napus HOM05D004498 ORTHO05D005300 4.5e-143 512.3 472 58.5
Dinv06575 Davidia involucrata HOM05D004498 ORTHO05D005300 1.2e-140 504.2 390 67.7
Zm00001eb105090 Zea mays HOM05D004498 ORTHO05D005300 1.8e-139 500.4 459 57.5
SGA_v2.0_scaffold92G28289 Striga asiatica HOM05D004498 ORTHO05D005300 7.4e-138 495.0 378 67.2
Nitab4.5_0002764g0030 Nicotiana tabacum HOM05D004498 ORTHO05D005300 3.8e-134 482.6 421 62.7
Oeu022469.1 Olea europaea HOM05D004498 ORTHO05D005300 8.4e-126 454.9 292 76.7
GSVIVG01037114001 Vitis vinifera HOM05D004498 ORTHO05D005300 5.1e-123 445.7 399 62.9
Migut.A00970 Erythranthe guttata HOM05D004498 ORTHO05D005300 6.9e-120 435.3 302 73.2
Mapoly0124s0016 Marchantia polymorpha HOM05D004498 ORTHO05D005300 1.0e-118 431.4 515 45.0
Pp3c18_8280 Physcomitrium patens HOM05D004498 ORTHO05D005300 1.6e-116 424.1 480 46.9
Rhsim07G0010200 Rhododendron simsii HOM05D004498 ORTHO05D005300 8.8e-115 418.3 338 66.0
SMO200G0031 Selaginella moellendorffii HOM05D004498 ORTHO05D005300 1.6e-108 397.5 510 44.5
CARHR205520 Cardamine hirsuta HOM05D004498 ORTHO05D005300 2.1e-100 370.5 252 74.2
Nitab4.5_0000818g0240 Nicotiana tabacum HOM05D004498 ORTHO05D005300 2.4e-96 357.1 323 61.0
AagrBONN_evm.TU.Sc2ySwM_362.1167 Anthoceros agrestis HOM05D004498 ORTHO05D005300 1.6e-92 344.4 444 45.0
Actinidia13585 Actinidia chinensis HOM05D004498 ORTHO05D005300 4.7e-84 316.2 206 76.2
arahy.Tifrunner.gnm1.ann1.XAT8RN Arachis hypogaea HOM05D004498 ORTHO05D005300 5.7e-82 309.3 264 61.4
AUR62038145 Chenopodium quinoa HOM05D004498 ORTHO05D005300 9.2e-80 302.0 370 48.4
Nitab4.5_0003647g0080 Nicotiana tabacum HOM05D004498 ORTHO05D005300 3.0e-75 287.0 462 40.3
BcaC06g32419 Brassica carinata HOM05D004498 ORTHO05D005300 2.3e-70 270.8 184 73.9
Migut.G01109 Erythranthe guttata HOM05D004498 ORTHO05D005300 8.6e-70 268.9 193 69.9
CDE02G4122 Ceratophyllum demersum HOM05D004498 ORTHO05D005300 4.7e-68 263.1 194 71.6
AagrBONN_evm.TU.Sc2ySwM_362.1160 Anthoceros agrestis HOM05D004498 ORTHO05D005300 7.5e-66 255.8 430 39.3
Oeu042546.1 Olea europaea HOM05D004498 ORTHO05D005300 1.1e-64 251.9 217 63.6
Cre11.g467726 Chlamydomonas reinhardtii HOM05D004498 ORTHO05D005300 1.3e-57 228.4 662 30.4
BcaNung06188 Brassica carinata HOM05D004498 ORTHO05D005300 1.7e-57 228.0 167 66.5
SEGI_20056 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 3.0e-54 217.2 198 57.6
arahy.Tifrunner.gnm1.ann1.BI5KXL Arachis hypogaea HOM05D004498 ORTHO05D005300 1.0e-46 192.2 191 54.5
MCO14G174 Micromonas commoda HOM05D004498 ORTHO05D005300 1.1e-45 188.7 434 33.4
Sabra03G0074300 Salix brachista HOM05D004498 ORTHO05D005300 4.9e-41 173.3 162 59.3
SGA_v2.0_scaffold4035G54420 Striga asiatica HOM05D004498 ORTHO05D005300 4.8e-36 156.8 152 53.3
PGSC0003DMG401007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 6.2e-36 156.4 97 81.4
Os07g0486100 Oryza sativa ssp. japonica HOM05D004498 ORTHO05D005300 5.3e-35 153.3 170 48.8
SEGI_08016 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 2.9e-33 147.5 158 51.9
SEGI_20600 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 2.9e-33 147.5 158 51.9
Nitab4.5_0002764g0040 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.9e-32 144.8 112 72.3
SEGI_28281 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 5.4e-32 143.3 126 50.0
Nn1g09635 Nelumbo nucifera HOM05D004498 ORTHO05D005300 1.8e-30 138.3 99 64.6
CSS0024530 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 7.4e-29 132.9 86 72.1
PRCOL_00001376 Prasinoderma coloniale HOM05D004498 ORTHO05D005300 6.2e-28 129.8 542 27.3
Lj3g0020155 Lotus japonicus HOM05D004498 ORTHO05D005300 6.9e-27 126.3 111 59.5
PGSC0003DMG402007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 9.0e-27 125.9 99 62.6
vmacro22806 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 9.9e-26 122.5 78 67.9
FvH4_1g27600 Fragaria vesca HOM05D004498 ORTHO05D005300 5.1e-22 110.2 89 70.8
Potri.003G107501 Populus trichocarpa HOM05D004498 ORTHO05D005300 1.5e-18 98.6 67 74.6
CARHR084780 Cardamine hirsuta HOM05D004498 ORTHO05D005300 2.6e-18 97.8 72 68.1
SalBow8G0163 Salvia bowleyana HOM05D004498 ORTHO05D005300 1.0e-17 95.9 62 80.6
SalBow8G4260 Salvia bowleyana HOM05D004498 ORTHO05D005300 1.0e-17 95.9 62 80.6
Prupe.6G034800 Prunus persica HOM05D004498 ORTHO05D005300 1.7e-17 95.1 56 82.1
SalBow7G0435 Salvia bowleyana HOM05D004498 ORTHO05D005300 1.9e-16 91.7 112 42.9
Rhsim07G0010100 Rhododendron simsii HOM05D004498 ORTHO05D005300 3.2e-16 90.9 242 32.2
PGR142G0681 Punica granatum HOM05D004498 ORTHO05D005300 3.0e-14 84.3 80 61.2
CSS0021614 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 3.3e-13 80.9 54 63.0
CSS0021260 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 6.3e-12 76.6 55 72.7
Nitab4.5_0003647g0090 Nicotiana tabacum HOM05D004498 ORTHO05D005300 8.2e-12 76.3 48 77.1
Cfa025118 Carpinus fangiana HOM05D004498 ORTHO05D005300 1.0e-09 69.3 194 29.4


User provided reference genes

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