Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.728 Acer truncatum HOM05D004547 ORTHO05D005133 0.0e+00 1597.8 835 100.0
Ciclev10004313m.g Citrus clementina HOM05D004547 ORTHO05D005133 0.0e+00 1430.2 838 88.7
QL09p005748 Quercus lobata HOM05D004547 ORTHO05D005133 0.0e+00 1407.1 837 87.1
Duzib205G1908 Durio zibethinus HOM05D004547 ORTHO05D005133 0.0e+00 1400.6 835 86.6
Cpa.g.sc3.324 Carica papaya HOM05D004547 ORTHO05D005133 0.0e+00 1398.6 841 85.9
Thecc.03G155600 Theobroma cacao HOM05D004547 ORTHO05D005133 0.0e+00 1398.3 835 86.7
Manes.06G134600 Manihot esculenta HOM05D004547 ORTHO05D005133 0.0e+00 1387.9 837 85.7
CiPaw.03G093300 Carya illinoinensis HOM05D004547 ORTHO05D005133 0.0e+00 1387.1 840 85.2
Prupe.2G277000 Prunus persica HOM05D004547 ORTHO05D005133 0.0e+00 1379.0 841 85.4
Potri.003G109100 Populus trichocarpa HOM05D004547 ORTHO05D005133 0.0e+00 1377.8 836 85.0
Cfa008167 Carpinus fangiana HOM05D004547 ORTHO05D005133 0.0e+00 1374.8 839 84.7
Dinv28576 Davidia involucrata HOM05D004547 ORTHO05D005133 0.0e+00 1372.8 839 85.2
PGR042G2008 Punica granatum HOM05D004547 ORTHO05D005133 0.0e+00 1365.1 838 83.9
Gorai.008G216000 Gossypium raimondii HOM05D004547 ORTHO05D005133 0.0e+00 1362.8 836 84.9
CANSAT56G3837 Cannabis sativa HOM05D004547 ORTHO05D005133 0.0e+00 1362.4 838 84.4
GSVIVG01018659001 Vitis vinifera HOM05D004547 ORTHO05D005133 0.0e+00 1361.7 839 84.9
CSS0028755 Camellia sinensis var. sinensis HOM05D004547 ORTHO05D005133 0.0e+00 1359.0 837 82.6
Gohir.A12G198300 Gossypium hirsutum HOM05D004547 ORTHO05D005133 0.0e+00 1359.0 836 84.2
Gohir.D12G200900 Gossypium hirsutum HOM05D004547 ORTHO05D005133 0.0e+00 1357.0 836 84.4
RcHm_v2.0_Chr1g0374281 Rosa chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1354.7 841 83.4
Hma1.2p1_0432F.1_g151760 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 0.0e+00 1352.4 839 83.3
FAN03G1184 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1350.5 841 83.0
Eucgr.A02893 Eucalyptus grandis HOM05D004547 ORTHO05D005133 0.0e+00 1350.1 839 82.8
FvH4_7g27490 Fragaria vesca HOM05D004547 ORTHO05D005133 0.0e+00 1347.4 841 83.0
FAN01G0567 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1343.9 841 82.8
TAR375G0699 Trochodendron aralioides HOM05D004547 ORTHO05D005133 0.0e+00 1340.9 839 83.3
CsaV3_3G016130 Cucumis sativus L. HOM05D004547 ORTHO05D005133 0.0e+00 1338.2 840 82.0
MELO3C006811.2 Cucumis melo HOM05D004547 ORTHO05D005133 0.0e+00 1333.9 840 81.8
Actinidia31780 Actinidia chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1333.5 839 81.5
FAN06G1879 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1330.9 861 80.8
Sed0008837 Sechium edule HOM05D004547 ORTHO05D005133 0.0e+00 1324.3 840 81.5
Sabra03G0075600 Salix brachista HOM05D004547 ORTHO05D005133 0.0e+00 1322.8 929 76.1
Glyma.09G224000 Glycine max HOM05D004547 ORTHO05D005133 0.0e+00 1322.0 837 82.4
Sed0001089 Sechium edule HOM05D004547 ORTHO05D005133 0.0e+00 1322.0 840 80.8
Glyma.12G013000 Glycine max HOM05D004547 ORTHO05D005133 0.0e+00 1321.2 837 82.2
Medtr0004s0490 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1318.1 836 81.6
THA.LOC104811522 Tarenaya hassleriana HOM05D004547 ORTHO05D005133 0.0e+00 1316.2 840 80.1
Rhsim03G0167200 Rhododendron simsii HOM05D004547 ORTHO05D005133 0.0e+00 1315.8 840 81.1
ClCG05G007360 Citrullus lanatus HOM05D004547 ORTHO05D005133 0.0e+00 1315.1 829 82.0
Lj3g0004511 Lotus japonicus HOM05D004547 ORTHO05D005133 0.0e+00 1313.9 836 82.1
Phvul.011G016000 Phaseolus vulgaris HOM05D004547 ORTHO05D005133 0.0e+00 1312.0 836 81.7
Lj1A979T84 Lonicera japonica HOM05D004547 ORTHO05D005133 0.0e+00 1306.6 837 80.4
VMungo1127G1242 Vigna mungo HOM05D004547 ORTHO05D005133 0.0e+00 1306.6 836 81.9
Ca_19628_v3 Cicer arietinum L. HOM05D004547 ORTHO05D005133 0.0e+00 1303.5 838 81.3
arahy.Tifrunner.gnm1.ann1.TL2CDN Arachis hypogaea HOM05D004547 ORTHO05D005133 0.0e+00 1298.1 836 80.9
CARHR264160 Cardamine hirsuta HOM05D004547 ORTHO05D005133 0.0e+00 1297.3 840 79.3
arahy.Tifrunner.gnm1.ann1.J7T2TK Arachis hypogaea HOM05D004547 ORTHO05D005133 0.0e+00 1296.6 836 80.7
Cc02_g04280 Coffea canephora HOM05D004547 ORTHO05D005133 0.0e+00 1293.9 846 78.8
AT5G51430 Arabidopsis thaliana HOM05D004547 ORTHO05D005133 0.0e+00 1291.9 840 79.5
AL8G25720 Arabidopsis lyrata HOM05D004547 ORTHO05D005133 0.0e+00 1291.2 840 79.2
Carub.0008s1145 Capsella rubella HOM05D004547 ORTHO05D005133 0.0e+00 1291.2 840 79.2
TWI39G0203 Tripterygium wilfordii HOM05D004547 ORTHO05D005133 0.0e+00 1288.5 835 80.0
Aa31sc202G10 Aethionema arabicum HOM05D004547 ORTHO05D005133 0.0e+00 1285.8 838 78.9
Nn1g01023 Nelumbo nucifera HOM05D004547 ORTHO05D005133 0.0e+00 1281.9 838 78.9
Oeu022486.1 Olea europaea HOM05D004547 ORTHO05D005133 0.0e+00 1281.5 840 78.6
Sp6g13590 Schrenkiella parvula HOM05D004547 ORTHO05D005133 0.0e+00 1280.8 840 78.7
BcaB08g35501 Brassica carinata HOM05D004547 ORTHO05D005133 0.0e+00 1279.2 838 78.5
Thhalv10012691m.g Eutrema salsugineum HOM05D004547 ORTHO05D005133 0.0e+00 1278.1 840 78.8
Lalb_Chr03g0024271 Lupinus albus HOM05D004547 ORTHO05D005133 0.0e+00 1277.7 837 79.7
A02p12350 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1269.2 837 78.6
Aqoxy2G03231 Aquilegia oxysepala HOM05D004547 ORTHO05D005133 0.0e+00 1268.1 841 78.5
C02p20480 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1267.7 836 78.2
PGSC0003DMG400017618 Solanum tuberosum HOM05D004547 ORTHO05D005133 0.0e+00 1265.8 838 77.3
Migut.F00479 Erythranthe guttata HOM05D004547 ORTHO05D005133 0.0e+00 1263.1 840 77.0
BcaC04g20676 Brassica carinata HOM05D004547 ORTHO05D005133 0.0e+00 1261.5 838 77.6
Sopen05g002910 Solanum pennellii HOM05D004547 ORTHO05D005133 0.0e+00 1259.2 838 77.0
BraA10t43010Z Brassica rapa HOM05D004547 ORTHO05D005133 0.0e+00 1258.4 839 77.5
BolC9t56951H Brassica oleracea HOM05D004547 ORTHO05D005133 0.0e+00 1257.3 839 77.5
C09p40720 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1256.9 839 77.5
A10p09340 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1254.6 839 77.5
Medtr6g005610 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1253.8 834 78.4
EL10Ac2g04890 Beta vulgaris HOM05D004547 ORTHO05D005133 0.0e+00 1252.7 840 77.0
Sc14g0005530 Simmondsia chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1250.3 837 77.2
Peaxi162Scf00023g01214 Petunia axillaris HOM05D004547 ORTHO05D005133 0.0e+00 1248.8 842 77.3
Lsat_1_v5_gn_9_52061 Lactuca sativa HOM05D004547 ORTHO05D005133 0.0e+00 1243.0 835 76.2
Nitab4.5_0004665g0060 Nicotiana tabacum HOM05D004547 ORTHO05D005133 0.0e+00 1241.9 838 76.3
DCAR_020189 Daucus carota HOM05D004547 ORTHO05D005133 0.0e+00 1239.9 836 76.9
PSO266G0090 Papaver somniferum HOM05D004547 ORTHO05D005133 0.0e+00 1238.8 853 77.1
ECA232G2122 Erigeron canadensis HOM05D004547 ORTHO05D005133 0.0e+00 1230.7 840 75.6
PSO384G4058 Papaver somniferum HOM05D004547 ORTHO05D005133 0.0e+00 1230.3 853 76.8
HanXRQChr16g0512771 Helianthus annuus HOM05D004547 ORTHO05D005133 0.0e+00 1229.2 839 75.9
SalBow5G1900 Salvia bowleyana HOM05D004547 ORTHO05D005133 0.0e+00 1226.5 857 74.2
SalBow5G5604 Salvia bowleyana HOM05D004547 ORTHO05D005133 0.0e+00 1225.7 857 74.1
MSTRG.8826 Avicennia marina HOM05D004547 ORTHO05D005133 0.0e+00 1223.4 840 74.9
CAN.G16.15 Capsicum annuum HOM05D004547 ORTHO05D005133 0.0e+00 1213.7 838 74.3
MD01G1182800 Malus domestica HOM05D004547 ORTHO05D005133 0.0e+00 1207.2 724 85.9
ATR0317G078 Amborella trichopoda HOM05D004547 ORTHO05D005133 0.0e+00 1198.7 841 72.9
Ah.10g036230 Amaranthus hybridus HOM05D004547 ORTHO05D005133 0.0e+00 1194.9 837 73.5
Hund13892 Selenicereus undatus HOM05D004547 ORTHO05D005133 0.0e+00 1192.9 808 77.1
TPR.G20262 Trifolium pratense HOM05D004547 ORTHO05D005133 0.0e+00 1185.6 839 75.4
TAR374G0871 Trochodendron aralioides HOM05D004547 ORTHO05D005133 0.0e+00 1185.6 744 82.0
vmacro06799 Vaccinium macrocarpon HOM05D004547 ORTHO05D005133 0.0e+00 1185.6 865 74.2
AUR62022938 Chenopodium quinoa HOM05D004547 ORTHO05D005133 0.0e+00 1174.1 855 72.2
SGA_v2.0_scaffold44G16547 Striga asiatica HOM05D004547 ORTHO05D005133 0.0e+00 1172.5 997 64.4
AUR62012299 Chenopodium quinoa HOM05D004547 ORTHO05D005133 0.0e+00 1165.2 837 72.9
unitig_37.g11930 Utricularia gibba HOM05D004547 ORTHO05D005133 0.0e+00 1111.3 841 67.9
Medtr6g005670 Medicago truncatula HOM05D004547 ORTHO05D005133 5.7e-310 1067.4 833 69.5
Psat0s2825g0040 Pisum sativum HOM05D004547 ORTHO05D005133 1.6e-304 1049.3 682 79.3
Zm00001eb389950 Zea mays HOM05D004547 ORTHO05D005133 2.6e-299 1031.9 719 72.7
Mapoly0007s0274 Marchantia polymorpha HOM05D004547 ORTHO05D005133 4.0e-255 885.2 855 55.8
Pp3c7_60 Physcomitrium patens HOM05D004547 ORTHO05D005133 1.0e-250 870.5 859 54.8
Hma1.2p1_0432F.1_g151750 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 7.0e-244 847.8 520 83.1
BcaC03g14608 Brassica carinata HOM05D004547 ORTHO05D005133 2.5e-233 812.8 542 76.2
CARHR150020 Cardamine hirsuta HOM05D004547 ORTHO05D005133 1.8e-231 806.6 608 69.4
SMO134G0015 Selaginella moellendorffii HOM05D004547 ORTHO05D005133 5.8e-230 801.6 839 51.7
Nitab4.5_0000895g0220 Nicotiana tabacum HOM05D004547 ORTHO05D005133 1.6e-224 783.5 543 73.1
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 2.1e-224 783.1 748 57.0
HPP92_005319 Vanilla planifolia HOM05D004547 ORTHO05D005133 8.1e-224 781.2 617 68.2
FAN06G1216 Fragaria x ananassa HOM05D004547 ORTHO05D005133 4.1e-220 768.8 512 79.1
COL.COLO4_14121 Corchorus olitorius HOM05D004547 ORTHO05D005133 5.3e-199 698.7 424 86.3
CBR_g31542 Chara braunii HOM05D004547 ORTHO05D005133 1.1e-196 691.0 904 44.9
CDE04G0004 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 1.8e-194 683.7 557 65.4
MD07G1253600 Malus domestica HOM05D004547 ORTHO05D005133 6.9e-191 671.8 446 80.9
FAN10G1756 Fragaria x ananassa HOM05D004547 ORTHO05D005133 8.8e-178 628.2 441 75.1
COL.COLO4_14122 Corchorus olitorius HOM05D004547 ORTHO05D005133 3.6e-163 579.7 343 86.0
Solyc05g006950.4 Solanum lycopersicum HOM05D004547 ORTHO05D005133 2.0e-153 547.4 395 70.9
HPP92_005328 Vanilla planifolia HOM05D004547 ORTHO05D005133 8.0e-147 525.4 448 65.2
SHI14003 Sapria himalayana HOM05D004547 ORTHO05D000023 4.6e-126 456.4 341 70.4
CDE04G0650 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 5.6e-124 449.5 370 65.7
BraA02t06300Z Brassica rapa HOM05D004547 ORTHO05D005133 1.1e-122 445.3 293 80.9
Oeu042559.1 Olea europaea HOM05D004547 ORTHO05D005133 4.7e-115 419.9 427 56.9
Nitab4.5_0019601g0010 Nicotiana tabacum HOM05D004547 ORTHO05D005133 1.4e-106 391.7 267 78.3
A10p09160 Brassica napus HOM05D004547 ORTHO05D005133 1.7e-104 384.8 235 79.6
BolC2t08183H Brassica oleracea HOM05D004547 ORTHO05D005133 4.9e-104 383.3 235 79.6
PRCOL_00005609 Prasinoderma coloniale HOM05D004547 ORTHO05D005133 4.4e-97 360.1 862 30.9
SEGI_24302 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 5.5e-79 300.1 211 71.1
Cre02.g086700 Chlamydomonas reinhardtii HOM05D004547 ORTHO05D005133 1.1e-74 285.8 856 27.9
CDE04G2539 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 3.9e-69 267.3 269 58.0
SEGI_05738 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 8.2e-67 259.6 230 64.8
SEGI_08321 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 3.8e-64 250.8 200 65.5
Os06g0669600 Oryza sativa ssp. japonica HOM05D004547 ORTHO05D005133 4.8e-59 233.8 179 69.8
HPP92_005318 Vanilla planifolia HOM05D004547 ORTHO05D005133 4.8e-59 233.8 289 47.4
QL10p003704 Quercus lobata HOM05D004547 ORTHO05D005133 4.5e-57 227.3 209 66.0
Actinidia24695 Actinidia chinensis HOM05D004547 ORTHO05D005133 1.5e-52 212.2 130 77.7
A10p09220 Brassica napus HOM05D004547 ORTHO05D005133 2.9e-48 198.0 122 77.9
TPR.G196 Trifolium pratense HOM05D004547 ORTHO05D005133 5.5e-47 193.7 127 81.1
MD07G1253700 Malus domestica HOM05D004547 ORTHO05D005133 4.4e-44 184.1 105 92.4
BraA10t43007Z Brassica rapa HOM05D004547 ORTHO05D005133 2.5e-39 168.3 104 76.0
BraA10t42999Z Brassica rapa HOM05D004547 ORTHO05D005133 1.6e-38 165.6 104 75.0
BraA10t43002Z Brassica rapa HOM05D004547 ORTHO05D005133 7.5e-36 156.8 96 76.0
A10p09300 Brassica napus HOM05D004547 ORTHO05D005133 9.7e-36 156.4 96 78.1
Psat7g163200 Pisum sativum HOM05D004547 ORTHO05D005133 4.1e-34 151.0 139 58.3
TAR082G0001 Trochodendron aralioides HOM05D004547 ORTHO05D005133 7.0e-34 150.2 97 76.3
Sc14g0005510 Simmondsia chinensis HOM05D004547 ORTHO05D005133 4.5e-33 147.5 95 78.9
CAN.G74.49 Capsicum annuum HOM05D004547 ORTHO05D005133 8.5e-32 143.3 229 40.2
SEGI_13446 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 1.4e-29 136.0 95 70.5
Actinidia01052 Actinidia chinensis HOM05D004547 ORTHO05D005133 1.7e-27 129.0 95 71.6
GSVIVG01036042001 Vitis vinifera HOM05D004547 ORTHO05D005133 4.1e-26 124.4 140 51.4
FvH4_7g19100 Fragaria vesca HOM05D004547 ORTHO05D005133 3.5e-25 121.3 87 78.2
CAN.G903.1 Capsicum annuum HOM05D004547 ORTHO05D005133 8.6e-24 116.7 243 35.0
Nitab4.5_0004558g0010 Nicotiana tabacum HOM05D004547 ORTHO05D016189 1.4e-21 109.4 216 34.3
CAN.G280.11 Capsicum annuum HOM05D004547 ORTHO05D005133 6.8e-21 107.1 211 36.5
Duzib147G0620 Durio zibethinus HOM05D004547 ORTHO05D005133 2.6e-20 105.1 92 65.2
SEGI_29591 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 2.2e-19 102.1 99 46.5
CAN.G689.6 Capsicum annuum HOM05D004547 ORTHO05D005133 2.8e-19 101.7 82 64.6
Haze_23095 Corylus avellana HOM05D001506 ORTHO05D000455 3.2e-18 98.2 78 73.1
FAN06G3837 Fragaria x ananassa HOM05D004547 ORTHO05D005133 7.0e-18 97.1 72 73.6
CAN.G118.7 Capsicum annuum HOM05D004547 ORTHO05D005133 5.4e-10 70.9 58 62.1
Nitab4.5_0011021g0010 Nicotiana tabacum HOM05D001522 ORTHO05D016189 9.2e-10 70.1 158 32.3
Pp3c11_26770 Physcomitrium patens HOM05D004547 ORTHO05D005133 1.5e-07 62.8 67 50.7
CAN.G689.5 Capsicum annuum HOM05D004547 ORTHO05D005133 2.1e-06 58.9 61 49.2


User provided reference genes

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