Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.651 Acer truncatum HOM05D005662 ORTHO05D007004 2.3e-128 462.2 232 100.0
Ciclev10005797m.g Citrus clementina HOM05D005662 ORTHO05D007004 3.7e-102 375.2 232 81.0
Thecc.03G160400 Theobroma cacao HOM05D005662 ORTHO05D007004 7.5e-95 350.9 229 77.7
CSS0015308 Camellia sinensis var. sinensis HOM05D005662 ORTHO05D007004 2.2e-94 349.4 233 76.8
TWI39G1176 Tripterygium wilfordii HOM05D005662 ORTHO05D007004 6.3e-94 347.8 230 74.8
Dinv22971 Davidia involucrata HOM05D005662 ORTHO05D007004 4.1e-93 345.1 228 74.6
COL.COLO4_14166 Corchorus olitorius HOM05D005662 ORTHO05D007004 7.0e-93 344.4 232 75.9
Actinidia25029 Actinidia chinensis HOM05D005662 ORTHO05D007004 2.3e-91 339.3 233 71.7
vmacro06774 Vaccinium macrocarpon HOM05D005662 ORTHO05D007004 3.8e-91 338.6 230 73.0
Gorai.001G237900 Gossypium raimondii HOM05D005662 ORTHO05D007004 5.0e-91 338.2 233 72.5
Prupe.2G281200 Prunus persica HOM05D005662 ORTHO05D007004 8.6e-91 337.4 233 74.2
Gohir.D07G210500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 1.5e-90 336.7 233 72.1
Manes.06G137000 Manihot esculenta HOM05D005662 ORTHO05D007004 1.5e-90 336.7 233 73.0
MD07G1257000 Malus domestica HOM05D005662 ORTHO05D007004 2.5e-90 335.9 233 75.1
Hma1.2p1_0654F.1_g196460 Hydrangea macrophylla HOM05D005662 ORTHO05D007004 3.3e-90 335.5 232 74.6
Duzib205G1232 Durio zibethinus HOM05D005662 ORTHO05D007004 4.3e-90 335.1 241 73.9
Gohir.A07G204500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 1.2e-89 333.6 233 73.0
Potri.015G129900 Populus trichocarpa HOM05D005662 ORTHO05D007004 2.1e-89 332.8 228 73.2
GSVIVG01018540001 Vitis vinifera HOM05D005662 ORTHO05D007004 3.0e-88 328.9 228 70.6
CiPaw.03G096300 Carya illinoinensis HOM05D005662 ORTHO05D007004 5.2e-88 328.2 234 72.2
THA.LOC104821401 Tarenaya hassleriana HOM05D005662 ORTHO05D007004 6.8e-88 327.8 231 71.0
Potri.012G128500 Populus trichocarpa HOM05D005662 ORTHO05D007004 1.2e-87 327.0 228 70.2
Thhalv10004861m.g Eutrema salsugineum HOM05D005662 ORTHO05D007004 3.4e-87 325.5 236 70.8
QL09p018886 Quercus lobata HOM05D005662 ORTHO05D007004 5.7e-87 324.7 231 71.9
Actinidia13561 Actinidia chinensis HOM05D005662 ORTHO05D007004 1.1e-85 320.5 228 69.7
Dinv28543 Davidia involucrata HOM05D005662 ORTHO05D007004 1.8e-85 319.7 228 70.6
MD01G1184800 Malus domestica HOM05D005662 ORTHO05D007004 3.2e-85 318.9 233 70.4
Carub.0008s2298 Capsella rubella HOM05D005662 ORTHO05D007004 7.0e-85 317.8 234 67.1
MSTRG.8809 Avicennia marina HOM05D005662 ORTHO05D007004 1.6e-84 316.6 232 68.5
Sopen03g023350 Solanum pennellii HOM05D005662 ORTHO05D007004 1.6e-84 316.6 230 69.1
TAR374G0299 Trochodendron aralioides HOM05D005662 ORTHO05D007004 4.6e-84 315.1 234 66.7
Eucgr.K00149 Eucalyptus grandis HOM05D005662 ORTHO05D007004 5.9e-84 314.7 235 70.2
CANSAT56G2670 Cannabis sativa HOM05D005662 ORTHO05D007004 1.7e-83 313.2 232 69.0
Nn4g26371 Nelumbo nucifera HOM05D005662 ORTHO05D007004 1.7e-83 313.2 230 70.4
Solyc03g083540.3 Solanum lycopersicum HOM05D005662 ORTHO05D007004 1.7e-83 313.2 230 68.7
Nitab4.5_0000072g0480 Nicotiana tabacum HOM05D005662 ORTHO05D007004 8.6e-83 310.8 230 68.3
Sp2g25490 Schrenkiella parvula HOM05D005662 ORTHO05D007004 8.6e-83 310.8 235 66.8
RcHm_v2.0_Chr1g0374961 Rosa chinensis HOM05D005662 ORTHO05D007004 1.5e-82 310.1 234 70.1
Nitab4.5_0000481g0050 Nicotiana tabacum HOM05D005662 ORTHO05D007004 4.3e-82 308.5 230 68.3
Atru.chr1.654 Acer truncatum HOM05D005662 ORTHO05D007004 7.3e-82 307.8 169 91.7
BcaB07g29785 Brassica carinata HOM05D005662 ORTHO05D007004 4.7e-81 305.1 236 66.1
AL8G39110 Arabidopsis lyrata HOM05D005662 ORTHO05D007004 6.2e-81 304.7 235 65.5
TAR375G0912 Trochodendron aralioides HOM05D005662 ORTHO05D007004 6.2e-81 304.7 222 66.2
Lsat_1_v5_gn_8_9401 Lactuca sativa HOM05D005662 ORTHO05D007004 8.0e-81 304.3 230 68.3
FvH4_7g28050 Fragaria vesca HOM05D005662 ORTHO05D007004 1.1e-80 303.9 234 68.8
MBI12_g31644_MAGBIO Magnolia biondii HOM05D005662 ORTHO05D007004 1.1e-80 303.9 231 64.1
CARHR276070 Cardamine hirsuta HOM05D005662 ORTHO05D007004 1.8e-80 303.1 236 64.4
PGSC0003DMG400023012 Solanum tuberosum HOM05D005662 ORTHO05D007004 8.9e-80 300.8 224 68.3
AT5G62290 Arabidopsis thaliana HOM05D005662 ORTHO05D007004 1.5e-79 300.1 234 65.4
A02p42240 Brassica napus HOM05D005662 ORTHO05D007004 1.5e-79 300.1 234 64.5
Duzib084G0609 Durio zibethinus HOM05D005662 ORTHO05D007004 1.5e-79 300.1 231 69.3
Cc02_g04010 Coffea canephora HOM05D005662 ORTHO05D007004 2.6e-79 299.3 232 66.4
DCAR_015743 Daucus carota HOM05D005662 ORTHO05D007004 2.6e-79 299.3 230 65.2
Sabra12G0096500 Salix brachista HOM05D005662 ORTHO05D007004 3.4e-79 298.9 209 69.9
C02p62090 Brassica napus HOM05D005662 ORTHO05D007004 5.8e-79 298.1 235 64.7
ECA232G3412 Erigeron canadensis HOM05D005662 ORTHO05D007004 1.3e-78 297.0 231 66.2
PGR142G0586 Punica granatum HOM05D005662 ORTHO05D007004 1.3e-78 297.0 233 65.7
Peaxi162Scf01372g00048 Petunia axillaris HOM05D005662 ORTHO05D007004 1.7e-78 296.6 223 65.0
Aqoxy7G00656 Aquilegia oxysepala HOM05D005662 ORTHO05D007004 2.2e-78 296.2 245 60.0
HanXRQChr08g0223561 Helianthus annuus HOM05D005662 ORTHO05D007004 6.4e-78 294.7 226 66.8
BolC3t18716H Brassica oleracea HOM05D005662 ORTHO05D007004 2.4e-77 292.7 237 63.7
Aa31LG11G1300 Aethionema arabicum HOM05D005662 ORTHO05D007004 5.4e-77 291.6 230 64.3
Ca_30761_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 1.6e-76 290.0 233 63.5
Rhsim03G0170700 Rhododendron simsii HOM05D005662 ORTHO05D007004 7.8e-76 287.7 282 55.7
Medtr4g033850 Medicago truncatula HOM05D005662 ORTHO05D007004 1.0e-75 287.3 232 63.4
Migut.F00442 Erythranthe guttata HOM05D005662 ORTHO05D007004 6.6e-75 284.6 232 63.4
SGA_v2.0_scaffold2G01165 Striga asiatica HOM05D005662 ORTHO05D007004 8.6e-75 284.3 238 63.9
BraA06t25849Z Brassica rapa HOM05D005662 ORTHO05D007004 1.9e-74 283.1 239 62.3
SalBow4G2223 Salvia bowleyana HOM05D005662 ORTHO05D007004 1.2e-73 280.4 229 64.2
SalBow4G3324 Salvia bowleyana HOM05D005662 ORTHO05D007004 1.2e-73 280.4 229 64.2
Phvul.011G004300 Phaseolus vulgaris HOM05D005662 ORTHO05D007004 3.6e-73 278.9 233 63.1
Sed0027239 Sechium edule HOM05D005662 ORTHO05D007004 3.6e-73 278.9 240 61.2
MELO3C005412.2 Cucumis melo HOM05D005662 ORTHO05D007004 8.1e-73 277.7 239 61.5
Oeu039209.1 Olea europaea HOM05D005662 ORTHO05D007004 1.1e-72 277.3 211 66.4
TPR.G15119 Trifolium pratense HOM05D005662 ORTHO05D007004 1.1e-72 277.3 232 60.8
Psat7g191960 Pisum sativum HOM05D005662 ORTHO05D007004 2.3e-72 276.2 234 62.4
EL10Ac3g05805 Beta vulgaris HOM05D005662 ORTHO05D007004 3.1e-72 275.8 232 62.1
HanXRQChr16g0512531 Helianthus annuus HOM05D005662 ORTHO05D007004 3.1e-72 275.8 233 63.9
SGA_v2.0_scaffold486G52387 Striga asiatica HOM05D005662 ORTHO05D007004 5.2e-72 275.0 235 63.4
BraA02t09152Z Brassica rapa HOM05D005662 ORTHO05D007004 8.9e-72 274.2 251 58.6
CDE02G0217 Ceratophyllum demersum HOM05D005662 ORTHO05D007004 2.0e-71 273.1 227 61.7
PSO478G4436 Papaver somniferum HOM05D005662 ORTHO05D007004 9.9e-71 270.8 231 61.0
PSO782G3258 Papaver somniferum HOM05D005662 ORTHO05D007004 9.9e-71 270.8 231 61.0
Glyma.14G044000 Glycine max HOM05D005662 ORTHO05D007004 1.4e-69 266.9 233 59.2
Lalb_Chr04g0260971 Lupinus albus HOM05D005662 ORTHO05D007004 1.9e-69 266.5 232 59.1
C03p64570 Brassica napus HOM05D000207 ORTHO05D001482 4.1e-69 265.4 213 63.8
ClCG01G005160 Citrullus lanatus HOM05D005662 ORTHO05D007004 1.2e-68 263.8 272 53.3
VMungo1127G2067 Vigna mungo HOM05D005662 ORTHO05D007004 2.7e-68 262.7 234 61.1
arahy.Tifrunner.gnm1.ann1.93Q1AU Arachis hypogaea HOM05D005662 ORTHO05D007004 6.0e-68 261.5 232 59.5
Hund04625 Selenicereus undatus HOM05D005662 ORTHO05D007004 1.3e-67 260.4 210 61.9
arahy.Tifrunner.gnm1.ann1.LZP622 Arachis hypogaea HOM05D005662 ORTHO05D007004 2.3e-67 259.6 232 59.5
HPP92_004603 Vanilla planifolia HOM05D005662 ORTHO05D007004 3.0e-67 259.2 223 59.6
Glyma.09G233200 Glycine max HOM05D005662 ORTHO05D007004 5.1e-67 258.5 233 58.4
Lalb_Chr15g0077021 Lupinus albus HOM05D005662 ORTHO05D007004 6.6e-67 258.1 233 60.1
arahy.Tifrunner.gnm1.ann1.TMT042 Arachis hypogaea HOM05D005662 ORTHO05D007004 8.6e-67 257.7 232 59.5
A06p29040 Brassica napus HOM05D000207 ORTHO05D001482 2.5e-66 256.1 214 62.6
arahy.Tifrunner.gnm1.ann1.QSR7PX Arachis hypogaea HOM05D005662 ORTHO05D007004 7.3e-66 254.6 232 58.6
Lj3g0023650 Lotus japonicus HOM05D005662 ORTHO05D007004 8.1e-65 251.1 248 56.5
unitig_37.g12504 Utricularia gibba HOM05D005662 ORTHO05D007004 1.4e-64 250.4 213 62.9
ATR0733G084 Amborella trichopoda HOM05D005662 ORTHO05D007004 1.9e-61 240.0 230 53.9
Ca_00244_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 1.2e-60 237.3 175 67.4
Haze_13835 Corylus avellana HOM05D005662 ORTHO05D007004 1.3e-59 233.8 232 56.0
Os10g0170000 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 1.9e-58 229.9 232 53.0
Sed0014362 Sechium edule HOM05D005662 ORTHO05D007004 1.9e-58 229.9 232 54.7
Os03g0249300 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 2.9e-54 216.1 229 51.1
Cfa008223 Carpinus fangiana HOM05D000922 ORTHO05D007004 7.8e-52 208.0 156 67.9
Zm00001eb224250 Zea mays HOM05D005662 ORTHO05D007004 2.3e-51 206.5 230 50.4
SEGI_33447 Sequoiadendron giganteum HOM05D005662 ORTHO05D007004 1.4e-48 197.2 214 50.5
Zm00001eb010690 Zea mays HOM05D005662 ORTHO05D007004 1.4e-48 197.2 268 44.8
AUR62016115 Chenopodium quinoa HOM05D005662 ORTHO05D007004 8.4e-46 188.0 228 47.4
Sabra15G0143400 Salix brachista HOM05D005662 ORTHO05D007004 7.9e-44 181.4 174 55.2
SMO351G0592 Selaginella moellendorffii HOM05D005662 ORTHO05D007004 2.8e-41 172.9 225 43.6
Sc13g0007790 Simmondsia chinensis HOM05D005662 ORTHO05D007004 6.2e-41 171.8 141 64.5
PSO063G7367 Papaver somniferum HOM05D005662 ORTHO05D007004 8.1e-41 171.4 135 63.0
Mapoly0005s0155 Marchantia polymorpha HOM05D005662 ORTHO05D007004 1.8e-40 170.2 232 41.4
Pp3c16_14910 Physcomitrium patens HOM05D005662 ORTHO05D007004 4.0e-40 169.1 235 42.6
CBR_g40194 Chara braunii HOM05D005662 ORTHO05D007004 4.5e-39 165.6 237 42.6
Pp3c5_5760 Physcomitrium patens HOM05D005662 ORTHO05D007004 4.5e-39 165.6 236 43.2
CAN.G152.22 Capsicum annuum HOM05D005662 ORTHO05D007004 1.1e-37 161.0 136 58.8
Cpa.g.sc130.1 Carica papaya HOM05D005662 ORTHO05D007004 2.7e-36 156.4 93 78.5
Lsat_1_v5_gn_9_52481 Lactuca sativa HOM05D005662 ORTHO05D007004 2.3e-35 153.3 216 44.9
BcaC03g18141 Brassica carinata HOM05D000207 ORTHO05D001482 8.2e-33 144.8 128 58.6
Ah.13g067320 Amaranthus hybridus HOM05D005662 ORTHO05D007004 4.9e-30 135.6 92 69.6
AagrBONN_evm.TU.Sc2ySwM_368.1564 Anthoceros agrestis HOM05D005662 ORTHO05D007004 1.0e-27 127.9 143 52.4
Ah.13g067330 Amaranthus hybridus HOM05D005662 ORTHO05D007004 6.7e-27 125.2 101 62.4
AUR62035061 Chenopodium quinoa HOM05D005662 ORTHO05D007004 1.1e-26 124.4 98 61.2
DCAR_018618 Daucus carota HOM05D005662 ORTHO05D007004 1.5e-26 124.0 137 50.4
Ciclev10006356m.g Citrus clementina HOM05D005662 ORTHO05D007004 1.3e-22 110.9 79 69.6
Thecc.03G160100 Theobroma cacao HOM05D005662 ORTHO05D007004 6.5e-22 108.6 135 51.9
PRCOL_00002770 Prasinoderma coloniale HOM05D005662 ORTHO05D007004 7.9e-20 101.7 168 38.7
COL.COLO4_29300 Corchorus olitorius HOM05D005662 ORTHO05D007004 3.9e-19 99.4 109 50.5
Cre12.g538150 Chlamydomonas reinhardtii HOM05D005662 ORTHO05D007004 7.4e-18 95.1 225 31.6
DCAR_021652 Daucus carota HOM05D000949 ORTHO05D001276 1.3e-17 94.4 115 46.1
MCO15G129 Micromonas commoda HOM05D005662 ORTHO05D007004 3.4e-15 86.3 186 31.7
arahy.Tifrunner.gnm1.ann1.6UH5I2 Arachis hypogaea HOM05D005662 ORTHO05D007004 7.7e-15 85.1 136 39.7
DCAR_023430 Daucus carota HOM05D005662 ORTHO05D004064 7.7e-15 85.1 73 56.2
FvH4_3g21360 Fragaria vesca HOM05D005731 ORTHO05D012104 2.2e-14 83.6 86 54.7
Solyc06g011630.1 Solanum lycopersicum HOM05D005662 ORTHO05D007004 6.1e-12 75.5 53 66.0
DCAR_026119 Daucus carota HOM05D000323 ORTHO05D000201 1.8e-11 73.9 104 44.2
arahy.Tifrunner.gnm1.ann1.8PDC51 Arachis hypogaea HOM05D005662 ORTHO05D007004 4.4e-10 69.3 94 41.5
THA.LOC104821571 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 5.9e-07 58.9 74 45.9


User provided reference genes

Program Settings