Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.57 Acer truncatum HOM05D007061 ORTHO05D009017 2.4e-212 741.9 372 100.0
Ciclev10004974m.g Citrus clementina HOM05D007061 ORTHO05D009017 3.0e-170 602.1 360 83.3
Potri.010G173800 Populus trichocarpa HOM05D007061 ORTHO05D009017 1.9e-169 599.4 365 80.8
Sabra10G0133700 Salix brachista HOM05D007061 ORTHO05D009017 1.8e-167 592.8 365 80.3
Gorai.001G051600 Gossypium raimondii HOM05D007061 ORTHO05D009017 1.7e-165 586.3 372 77.2
Gohir.D07G048400 Gossypium hirsutum HOM05D007061 ORTHO05D009017 3.8e-165 585.1 371 77.9
Duzib213G0730 Durio zibethinus HOM05D007061 ORTHO05D009017 4.9e-165 584.7 374 78.9
Manes.16G047900 Manihot esculenta HOM05D007061 ORTHO05D009017 1.0e-162 577.0 365 79.7
QL04p093744 Quercus lobata HOM05D007061 ORTHO05D009017 6.7e-162 574.3 385 75.3
CsaV3_6G013460 Cucumis sativus L. HOM05D007061 ORTHO05D009017 1.5e-161 573.2 363 77.1
FvH4_3g14100 Fragaria vesca HOM05D007061 ORTHO05D009017 2.1e-160 569.3 360 76.7
FAN11G3441 Fragaria x ananassa HOM05D007061 ORTHO05D009017 2.1e-160 569.3 360 76.7
CiPaw.11G057200 Carya illinoinensis HOM05D007061 ORTHO05D009017 4.8e-160 568.2 359 77.4
RcHm_v2.0_Chr5g0023411 Rosa chinensis HOM05D007061 ORTHO05D009017 4.8e-160 568.2 360 77.2
ClCG02G018710 Citrullus lanatus HOM05D007061 ORTHO05D009017 3.1e-159 565.5 363 77.1
CANSAT35G1572 Cannabis sativa HOM05D007061 ORTHO05D009017 4.1e-159 565.1 360 77.8
TAR627G0473 Trochodendron aralioides HOM05D007061 ORTHO05D009017 1.5e-158 563.1 360 77.2
MD10G1216400 Malus domestica HOM05D007061 ORTHO05D009017 2.6e-158 562.4 358 76.0
Eucgr.K03462 Eucalyptus grandis HOM05D007061 ORTHO05D009017 1.3e-157 560.1 361 74.2
MELO3C019630.2 Cucumis melo HOM05D007061 ORTHO05D009017 3.2e-156 555.4 352 76.7
Glyma.08G234700 Glycine max HOM05D007061 ORTHO05D009017 9.3e-156 553.9 364 76.1
PGR044G2241 Punica granatum HOM05D007061 ORTHO05D009017 1.6e-155 553.1 355 75.5
THA.LOC104810275 Tarenaya hassleriana HOM05D007061 ORTHO05D009017 2.1e-155 552.7 363 73.0
Aqoxy2G00253 Aquilegia oxysepala HOM05D007061 ORTHO05D009017 6.7e-154 547.7 362 75.4
Ca_23083_v3 Cicer arietinum L. HOM05D007061 ORTHO05D009017 1.9e-153 546.2 357 75.4
arahy.Tifrunner.gnm1.ann1.69KP4R Arachis hypogaea HOM05D007061 ORTHO05D009017 2.5e-153 545.8 358 74.6
TPR.G9404 Trifolium pratense HOM05D007061 ORTHO05D009017 9.7e-153 543.9 354 75.1
Psat4g170560 Pisum sativum HOM05D007061 ORTHO05D009017 1.6e-152 543.1 362 73.5
Lj3g0003258 Lotus japonicus HOM05D007061 ORTHO05D009017 2.2e-152 542.7 364 73.6
Prupe.4G128300 Prunus persica HOM05D007061 ORTHO05D009017 1.8e-151 539.7 334 78.4
Lalb_Chr03g0031881 Lupinus albus HOM05D007061 ORTHO05D009017 2.4e-151 539.3 361 72.9
Nn7g38366 Nelumbo nucifera HOM05D007061 ORTHO05D009017 6.9e-151 537.7 360 72.8
Hma1.2p1_0151F.1_g067030 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 2.0e-150 536.2 360 73.6
Actinidia24658 Actinidia chinensis HOM05D007061 ORTHO05D009017 2.9e-149 532.3 361 72.0
FAN25G0842 Fragaria x ananassa HOM05D007061 ORTHO05D009017 1.1e-148 530.4 357 73.1
FAN16G1770 Fragaria x ananassa HOM05D007061 ORTHO05D009017 2.5e-148 529.3 360 72.8
PSO675G3863 Papaver somniferum HOM05D007061 ORTHO05D009017 2.1e-147 526.2 342 75.1
CSS0041382 Camellia sinensis var. sinensis HOM05D007061 ORTHO05D009017 2.7e-147 525.8 328 77.7
AL1G64530 Arabidopsis lyrata HOM05D007061 ORTHO05D009017 1.4e-146 523.5 361 69.8
Dinv42463 Davidia involucrata HOM05D007061 ORTHO05D009017 1.8e-146 523.1 344 75.6
CARHR045980 Cardamine hirsuta HOM05D007061 ORTHO05D009017 2.3e-146 522.7 361 69.8
Cc05_g16540 Coffea canephora HOM05D007061 ORTHO05D009017 7.4e-145 517.7 354 72.9
PSO675G0660 Papaver somniferum HOM05D007061 ORTHO05D009017 7.4e-145 517.7 349 72.8
Lsat_1_v5_gn_7_70001 Lactuca sativa HOM05D007061 ORTHO05D009017 1.3e-144 516.9 355 72.7
Aa31LG10G30 Aethionema arabicum HOM05D007061 ORTHO05D009017 3.1e-143 512.3 362 67.7
ECA240G0752 Erigeron canadensis HOM05D007061 ORTHO05D009017 6.9e-143 511.1 346 73.7
GSVIVG01036723001 Vitis vinifera HOM05D007061 ORTHO05D009017 9.1e-143 510.8 308 79.9
Thhalv10011478m.g Eutrema salsugineum HOM05D007061 ORTHO05D009017 7.7e-142 507.7 365 67.7
Phvul.011G179100 Phaseolus vulgaris HOM05D007061 ORTHO05D009017 5.0e-141 505.0 308 77.6
HanXRQChr03g0080291 Helianthus annuus HOM05D007061 ORTHO05D009017 2.5e-140 502.7 355 69.9
Sp1g41850 Schrenkiella parvula HOM05D007061 ORTHO05D009017 3.2e-140 502.3 365 67.7
Nitab4.5_0000029g0190 Nicotiana tabacum HOM05D007061 ORTHO05D009017 1.2e-139 500.4 355 70.4
Lj2A10G39 Lonicera japonica HOM05D007061 ORTHO05D009017 6.1e-139 498.0 351 71.5
Peaxi162Scf00452g00232 Petunia axillaris HOM05D007061 ORTHO05D009017 6.7e-138 494.6 352 68.5
vmacro11681 Vaccinium macrocarpon HOM05D007061 ORTHO05D009017 2.0e-137 493.0 320 75.3
A05p26620 Brassica napus HOM05D007061 ORTHO05D009017 2.6e-137 492.7 335 71.0
BraA05t21537Z Brassica rapa HOM05D007061 ORTHO05D009017 2.6e-137 492.7 335 71.0
SGA_v2.0_scaffold186G40180 Striga asiatica HOM05D007061 ORTHO05D009017 3.3e-137 492.3 346 70.5
SalBow8G1458 Salvia bowleyana HOM05D007061 ORTHO05D009017 5.7e-137 491.5 349 69.6
C05p41210 Brassica napus HOM05D007061 ORTHO05D009017 1.8e-135 486.5 339 69.9
BcaB02g10820 Brassica carinata HOM05D007061 ORTHO05D009017 5.3e-135 485.0 367 65.7
SalBow8G1251 Salvia bowleyana HOM05D007061 ORTHO05D009017 7.0e-135 484.6 349 68.8
unitig_37.g12195 Utricularia gibba HOM05D007061 ORTHO05D009017 9.1e-135 484.2 343 67.3
Gohir.A07G044000 Gossypium hirsutum HOM05D007061 ORTHO05D009017 2.0e-134 483.0 372 67.7
ATR0763G190 Amborella trichopoda HOM05D007061 ORTHO05D009017 4.5e-134 481.9 369 66.1
DCAR_009658 Daucus carota HOM05D007061 ORTHO05D009017 1.0e-133 480.7 308 73.7
AUR62037650 Chenopodium quinoa HOM05D007061 ORTHO05D009017 5.0e-133 478.4 320 72.8
Zm00001eb233280 Zea mays HOM05D007061 ORTHO05D009017 2.5e-132 476.1 340 67.4
Thecc.07G189200 Theobroma cacao HOM05D007061 ORTHO05D009017 1.2e-131 473.8 316 74.1
Carub.0001s4486 Capsella rubella HOM05D007061 ORTHO05D009017 4.7e-131 471.9 309 69.6
TWI59G0237 Tripterygium wilfordii HOM05D007061 ORTHO05D009017 4.7e-131 471.9 346 69.7
CAN.G943.59 Capsicum annuum HOM05D007061 ORTHO05D009017 3.0e-130 469.2 358 67.6
arahy.Tifrunner.gnm1.ann1.RLLR5G Arachis hypogaea HOM05D007061 ORTHO05D009017 1.8e-127 459.9 569 46.9
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 3.8e-125 452.2 361 64.8
VMungo1127G1118 Vigna mungo HOM05D007061 ORTHO05D009017 1.9e-124 449.9 289 76.8
Sed0001021 Sechium edule HOM05D007061 ORTHO05D009017 2.1e-123 446.4 290 76.6
Cpa.g.sc32.92 Carica papaya HOM05D007061 ORTHO05D009017 5.4e-119 431.8 267 76.8
COL.COLO4_24973 Corchorus olitorius HOM05D007061 ORTHO05D009017 1.0e-117 427.6 363 63.6
Nitab4.5_0002862g0050 Nicotiana tabacum HOM05D007061 ORTHO05D009017 8.5e-117 424.5 397 58.2
Os02g0173700 Oryza sativa ssp. japonica HOM05D007061 ORTHO05D009017 2.5e-116 422.9 288 67.7
BcaC05g28094 Brassica carinata HOM05D007061 ORTHO05D009017 4.9e-112 408.7 349 61.3
Sc03g0005020 Simmondsia chinensis HOM05D007061 ORTHO05D009017 3.1e-111 406.0 288 69.4
Migut.M01505 Erythranthe guttata HOM05D007061 ORTHO05D009017 9.2e-111 404.4 364 59.1
Pp3c22_13410 Physcomitrium patens HOM05D007061 ORTHO05D009017 1.2e-107 394.0 344 54.7
AagrBONN_evm.TU.Sc2ySwM_228.3482 Anthoceros agrestis HOM05D007061 ORTHO05D009017 6.4e-104 381.7 329 55.0
Mapoly0013s0085 Marchantia polymorpha HOM05D007061 ORTHO05D009017 1.8e-103 380.2 349 55.3
SMO145G0248 Selaginella moellendorffii HOM05D007061 ORTHO05D009017 2.4e-103 379.8 343 54.8
Haze_07765 Corylus avellana HOM05D007061 ORTHO05D009017 1.9e-100 370.2 299 63.9
BolC5t32863H Brassica oleracea HOM05D007061 ORTHO05D009017 4.4e-97 359.0 251 70.1
AT1G54310 Arabidopsis thaliana HOM05D007061 ORTHO05D009017 2.8e-83 313.2 229 67.2
arahy.Tifrunner.gnm1.ann1.R5CYRF Arachis hypogaea HOM05D007061 ORTHO05D009017 3.6e-83 312.8 226 72.1
Rhsim06G0244100 Rhododendron simsii HOM05D007061 ORTHO05D009017 4.9e-72 275.8 227 60.8
Cre16.g649400 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 3.2e-71 273.1 368 41.0
PRCOL_00003223 Prasinoderma coloniale HOM05D007061 ORTHO05D009017 2.6e-65 253.4 355 39.2
SEGI_31810 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 9.3e-63 245.0 199 59.3
Actinidia26210 Actinidia chinensis HOM05D007061 ORTHO05D009017 7.9e-54 215.3 155 69.7
MCO09G574 Micromonas commoda HOM05D007061 ORTHO05D009017 1.1e-52 211.5 378 34.9
MD05G1238000 Malus domestica HOM05D007061 ORTHO05D009017 8.2e-51 205.3 133 75.2
Rhsim06G0244000 Rhododendron simsii HOM05D007061 ORTHO05D009017 5.3e-50 202.6 176 61.9
SEGI_33801 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 5.5e-47 192.6 140 64.3
Hma1.2p1_0151F.1_g067050 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 6.9e-42 175.6 101 82.2
Cre09.g407900 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 5.5e-39 166.0 338 33.4
SGA_v2.0_scaffold112G31643 Striga asiatica HOM05D007061 ORTHO05D009017 2.5e-36 157.1 101 81.2
SGA_v2.0_scaffold60G20904 Striga asiatica HOM05D007061 ORTHO05D009017 2.5e-36 157.1 101 81.2
HPP92_028076 Vanilla planifolia HOM05D007061 ORTHO05D009017 9.7e-36 155.2 112 72.3
RcHm_v2.0_Chr1g0324361 Rosa chinensis HOM05D007061 ORTHO05D009017 1.0e-29 135.2 76 85.5
AUR62041050 Chenopodium quinoa HOM05D007061 ORTHO05D009017 6.3e-19 99.4 61 72.1
Lsat_1_v5_gn_4_131100 Lactuca sativa HOM05D007061 ORTHO05D004266 1.2e-14 85.1 56 62.5
MCO14G211 Micromonas commoda HOM05D027329 ORTHO05D268215 1.7e-11 74.7 253 24.1
HPP92_028078 Vanilla planifolia HOM05D007061 ORTHO05D009017 1.3e-08 65.1 35 82.9
Lsat_1_v5_gn_3_11400 Lactuca sativa HOM05D003461 ORTHO05D004386 8.5e-08 62.4 79 45.6


User provided reference genes

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