Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.554 Acer truncatum HOM05D006286 ORTHO05D007741 9.8e-138 493.4 243 100.0
Ciclev10005723m.g Citrus clementina HOM05D006286 ORTHO05D007741 8.3e-113 410.6 245 81.6
RcHm_v2.0_Chr1g0376301 Rosa chinensis HOM05D006286 ORTHO05D007741 2.5e-109 399.1 244 79.9
Manes.14G030600 Manihot esculenta HOM05D006286 ORTHO05D007741 4.3e-109 398.3 244 80.3
FAN10G3629 Fragaria x ananassa HOM05D006286 ORTHO05D007741 5.6e-109 397.9 244 79.5
TWI39G0272 Tripterygium wilfordii HOM05D006286 ORTHO05D007741 1.6e-108 396.4 243 80.2
GSVIVG01018444001 Vitis vinifera HOM05D006286 ORTHO05D007741 3.6e-108 395.2 243 79.8
FAN06G1618 Fragaria x ananassa HOM05D006286 ORTHO05D007741 1.1e-107 393.7 244 78.3
FvH4_7g28750 Fragaria vesca HOM05D006286 ORTHO05D007741 1.4e-107 393.3 244 78.3
Thecc.03G167300 Theobroma cacao HOM05D006286 ORTHO05D007741 1.4e-107 393.3 244 79.5
Prupe.2G287700 Prunus persica HOM05D006286 ORTHO05D007741 2.4e-107 392.5 243 79.8
FAN01G0056 Fragaria x ananassa HOM05D006286 ORTHO05D007741 3.1e-107 392.1 244 78.7
Sabra15G0147300 Salix brachista HOM05D006286 ORTHO05D007741 3.1e-107 392.1 238 80.3
Haze_13788 Corylus avellana HOM05D006286 ORTHO05D007741 2.0e-106 389.4 239 79.9
FAN03G0223 Fragaria x ananassa HOM05D006286 ORTHO05D007741 7.6e-106 387.5 248 77.8
FAN03G0937 Fragaria x ananassa HOM05D006286 ORTHO05D007741 7.6e-106 387.5 248 77.8
FAN06G4550 Fragaria x ananassa HOM05D006286 ORTHO05D007741 1.3e-105 386.7 244 77.5
MD01G1193900 Malus domestica HOM05D006286 ORTHO05D007741 1.7e-105 386.3 245 79.2
CiPaw.03G100700 Carya illinoinensis HOM05D006286 ORTHO05D007741 2.2e-105 386.0 238 79.8
Cfa008258 Carpinus fangiana HOM05D006286 ORTHO05D007741 2.9e-105 385.6 239 79.1
QL09p015278 Quercus lobata HOM05D006286 ORTHO05D007741 2.9e-105 385.6 248 75.8
Lj5g0022226 Lotus japonicus HOM05D006286 ORTHO05D007741 1.1e-104 383.6 241 78.8
arahy.Tifrunner.gnm1.ann1.MQ4KH5 Arachis hypogaea HOM05D006286 ORTHO05D007741 1.9e-104 382.9 239 77.0
Potri.015G135300 Populus trichocarpa HOM05D006286 ORTHO05D007741 3.2e-104 382.1 237 77.6
Duzib084G1364 Durio zibethinus HOM05D006286 ORTHO05D007741 1.2e-103 380.2 244 77.5
Glyma.10G240400 Glycine max HOM05D006286 ORTHO05D007741 3.5e-103 378.6 246 76.0
ClCG05G007720 Citrullus lanatus HOM05D006286 ORTHO05D007741 1.0e-102 377.1 244 76.2
Gorai.013G064300 Gossypium raimondii HOM05D006286 ORTHO05D007741 3.9e-102 375.2 247 76.1
TPR.G17410 Trifolium pratense HOM05D006286 ORTHO05D007741 5.1e-102 374.8 246 74.8
Gohir.D13G056900 Gossypium hirsutum HOM05D006286 ORTHO05D007741 6.6e-102 374.4 247 76.1
Rhsim03G0175100 Rhododendron simsii HOM05D006286 ORTHO05D007741 8.7e-102 374.0 236 77.1
Cpa.g.sc4.205 Carica papaya HOM05D006286 ORTHO05D007741 1.5e-101 373.2 236 78.8
MELO3C006861.2 Cucumis melo HOM05D006286 ORTHO05D007741 1.5e-101 373.2 245 75.1
CSS0046699 Camellia sinensis var. sinensis HOM05D006286 ORTHO05D007741 3.3e-101 372.1 237 76.8
CANSAT25G1059 Cannabis sativa HOM05D006286 ORTHO05D007741 7.3e-101 370.9 242 74.4
Gohir.A09G179500 Gossypium hirsutum HOM05D006286 ORTHO05D007741 1.2e-100 370.2 234 76.5
CsaV3_3G016660 Cucumis sativus L. HOM05D006286 ORTHO05D007741 2.8e-100 369.0 245 74.7
Phvul.007G065700 Phaseolus vulgaris HOM05D006286 ORTHO05D007741 2.8e-100 369.0 240 75.8
Ca_10810_v3 Cicer arietinum L. HOM05D006286 ORTHO05D007741 8.1e-100 367.5 246 73.6
Gohir.A13G064700 Gossypium hirsutum HOM05D006286 ORTHO05D007741 8.1e-100 367.5 247 74.9
Gorai.006G196900 Gossypium raimondii HOM05D006286 ORTHO05D007741 8.1e-100 367.5 235 76.2
Eucgr.A02845 Eucalyptus grandis HOM05D006286 ORTHO05D007741 5.3e-99 364.8 242 74.0
Psat6g201680 Pisum sativum HOM05D006286 ORTHO05D007741 1.5e-98 363.2 236 75.0
Lsat_1_v5_gn_2_130220 Lactuca sativa HOM05D006286 ORTHO05D007741 2.0e-98 362.8 243 72.8
Cc02_g03560 Coffea canephora HOM05D006286 ORTHO05D007741 2.6e-98 362.5 236 72.5
Sed0023063 Sechium edule HOM05D006286 ORTHO05D007741 2.6e-98 362.5 243 74.5
Lalb_Chr06g0160901 Lupinus albus HOM05D006286 ORTHO05D007741 5.8e-98 361.3 236 75.0
Nn1g01303 Nelumbo nucifera HOM05D006286 ORTHO05D007741 1.3e-97 360.1 218 78.4
Actinidia25052 Actinidia chinensis HOM05D006286 ORTHO05D007741 1.4e-96 356.7 233 75.5
HanXRQChr14g0461801 Helianthus annuus HOM05D006286 ORTHO05D007741 1.4e-96 356.7 239 72.4
TAR629G0337 Trochodendron aralioides HOM05D006286 ORTHO05D007741 3.2e-96 355.5 218 77.1
Peaxi162Scf00192g00519 Petunia axillaris HOM05D006286 ORTHO05D007741 4.2e-96 355.1 237 73.0
Sopen03g002810 Solanum pennellii HOM05D006286 ORTHO05D007741 5.4e-96 354.8 237 73.0
Solyc03g006820.3 Solanum lycopersicum HOM05D006286 ORTHO05D007741 1.2e-95 353.6 237 72.6
VMungo0720G2540 Vigna mungo HOM05D006286 ORTHO05D007741 1.2e-95 353.6 234 73.5
CAN.G1097.8 Capsicum annuum HOM05D006286 ORTHO05D007741 2.7e-95 352.4 240 72.5
DCAR_018141 Daucus carota HOM05D006286 ORTHO05D007741 1.0e-94 350.5 237 72.6
PSO782G2014 Papaver somniferum HOM05D006286 ORTHO05D007741 1.0e-94 350.5 244 70.9
Rhsim09G0195200 Rhododendron simsii HOM05D006286 ORTHO05D007741 1.7e-94 349.7 234 72.6
Oeu047963.2 Olea europaea HOM05D006286 ORTHO05D007741 3.9e-94 348.6 241 72.2
Nitab4.5_0004911g0020 Nicotiana tabacum HOM05D006286 ORTHO05D007741 8.7e-94 347.4 230 72.6
PSO478G4977 Papaver somniferum HOM05D006286 ORTHO05D007741 1.9e-93 346.3 238 71.0
vmacro09869 Vaccinium macrocarpon HOM05D006286 ORTHO05D007741 5.6e-93 344.7 233 71.7
PGSC0003DMG400024248 Solanum tuberosum HOM05D006286 ORTHO05D007741 7.3e-93 344.4 237 70.9
Dinv28504 Davidia involucrata HOM05D006286 ORTHO05D007741 1.3e-92 343.6 305 60.0
PSO782G5477 Papaver somniferum HOM05D006286 ORTHO05D007741 1.3e-92 343.6 238 70.6
SGA_v2.0_scaffold113G31783 Striga asiatica HOM05D006286 ORTHO05D007741 2.1e-92 342.8 237 72.2
Ah.13g067810 Amaranthus hybridus HOM05D006286 ORTHO05D007741 3.6e-92 342.0 218 77.5
Aa31sc908G10 Aethionema arabicum HOM05D006286 ORTHO05D007741 6.2e-92 341.3 239 71.5
EL10Ac3g05740 Beta vulgaris HOM05D006286 ORTHO05D007741 5.3e-91 338.2 218 76.1
AUR62021266 Chenopodium quinoa HOM05D006286 ORTHO05D007741 5.3e-91 338.2 233 72.5
Thhalv10014484m.g Eutrema salsugineum HOM05D006286 ORTHO05D007741 9.0e-91 337.4 240 70.8
THA.LOC104825086 Tarenaya hassleriana HOM05D006286 ORTHO05D007741 1.5e-90 336.7 241 70.5
Migut.F00396 Erythranthe guttata HOM05D006286 ORTHO05D007741 3.4e-90 335.5 240 70.0
Carub.0008s1192 Capsella rubella HOM05D006286 ORTHO05D007741 7.6e-90 334.3 220 75.9
Actinidia14215 Actinidia chinensis HOM05D006286 ORTHO05D007741 1.3e-89 333.6 247 68.4
Sc13g0008250 Simmondsia chinensis HOM05D006286 ORTHO05D007741 2.2e-89 332.8 234 70.1
ECA238G1566 Erigeron canadensis HOM05D006286 ORTHO05D007741 2.9e-89 332.4 236 69.1
Sp6g14140 Schrenkiella parvula HOM05D006286 ORTHO05D007741 2.9e-89 332.4 223 74.4
C09p41380 Brassica napus HOM05D006286 ORTHO05D007741 6.4e-89 331.3 238 71.4
BolC9t57014H Brassica oleracea HOM05D006286 ORTHO05D007741 6.4e-89 331.3 238 71.4
BcaC04g20627 Brassica carinata HOM05D006286 ORTHO05D007741 1.9e-88 329.7 237 71.3
MSTRG.8433 Avicennia marina HOM05D006286 ORTHO05D007741 4.2e-88 328.6 289 60.9
A10p09720 Brassica napus HOM05D006286 ORTHO05D007741 5.4e-88 328.2 240 70.0
BraA10t43052Z Brassica rapa HOM05D006286 ORTHO05D007741 5.4e-88 328.2 240 70.0
Lj8A31T63 Lonicera japonica HOM05D006286 ORTHO05D007741 5.4e-88 328.2 199 79.4
AT5G51880 Arabidopsis thaliana HOM05D006286 ORTHO05D007741 7.1e-88 327.8 239 70.7
Aqoxy7G00487 Aquilegia oxysepala HOM05D006286 ORTHO05D007741 1.2e-87 327.0 241 68.0
AL8G26180 Arabidopsis lyrata HOM05D006286 ORTHO05D007741 1.2e-87 327.0 225 73.3
arahy.Tifrunner.gnm1.ann1.TWGE9F Arachis hypogaea HOM05D006286 ORTHO05D007741 2.1e-87 326.2 209 74.6
BcaB08g35541 Brassica carinata HOM05D006286 ORTHO05D007741 1.8e-86 323.2 239 68.2
Nitab4.5_0000832g0010 Nicotiana tabacum HOM05D006286 ORTHO05D007741 2.3e-86 322.8 195 79.0
AUR62016058 Chenopodium quinoa HOM05D006286 ORTHO05D007741 3.3e-85 318.9 195 78.5
Hund04686 Selenicereus undatus HOM05D006286 ORTHO05D007741 1.3e-84 317.0 229 70.3
PGR042G3452 Punica granatum HOM05D006286 ORTHO05D007741 8.1e-84 314.3 207 74.9
ATR0757G128 Amborella trichopoda HOM05D006286 ORTHO05D007741 1.1e-83 313.9 231 63.6
vmacro06741 Vaccinium macrocarpon HOM05D006286 ORTHO05D007741 6.4e-81 304.7 206 71.8
unitig_37.g11947 Utricularia gibba HOM05D006286 ORTHO05D007741 9.3e-80 300.8 220 65.5
Os03g0119000 Oryza sativa ssp. japonica HOM05D006286 ORTHO05D007741 1.0e-78 297.4 218 66.5
COL.COLO4_14231 Corchorus olitorius HOM05D006286 ORTHO05D007741 4.3e-77 292.0 180 76.7
HPP92_003528 Vanilla planifolia HOM05D006286 ORTHO05D007741 5.6e-77 291.6 241 60.6
Glyma.20G154300 Glycine max HOM05D006286 ORTHO05D007741 1.3e-76 290.4 204 72.5
CARHR264790 Cardamine hirsuta HOM05D006286 ORTHO05D007741 1.6e-76 290.0 199 72.4
SalBow2G2245 Salvia bowleyana HOM05D006286 ORTHO05D007741 2.1e-76 289.7 238 62.2
CDE12G0688 Ceratophyllum demersum HOM05D006286 ORTHO05D007741 3.2e-72 275.8 222 60.8
CiPaw.15G075500 Carya illinoinensis HOM05D006286 ORTHO05D007741 1.8e-70 270.0 211 65.4
Potri.012G133100 Populus trichocarpa HOM05D006286 ORTHO05D007741 3.0e-70 269.2 267 58.4
MBI12_g36686_MAGBIO Magnolia biondii HOM05D006286 ORTHO05D007741 9.7e-69 264.2 197 66.0
Mapoly0028s0137 Marchantia polymorpha HOM05D006286 ORTHO05D007741 3.2e-64 249.2 238 53.4
SMO139G0115 Selaginella moellendorffii HOM05D006286 ORTHO05D007741 9.4e-64 247.7 220 55.0
Gohir.D09G174800 Gossypium hirsutum HOM05D006286 ORTHO05D007741 1.2e-63 247.3 144 80.6
AagrBONN_evm.TU.Sc2ySwM_368.2699 Anthoceros agrestis HOM05D006286 ORTHO05D007741 4.5e-58 228.8 226 52.7
Medtr1g101840 Medicago truncatula HOM05D006286 ORTHO05D007741 5.9e-58 228.4 141 78.0
Pp3c22_4190 Physcomitrium patens HOM05D006286 ORTHO05D007741 7.7e-58 228.0 243 51.0
SEGI_34239 Sequoiadendron giganteum HOM05D006286 ORTHO05D007741 6.1e-55 218.4 176 60.8
Zm00001eb001360 Zea mays HOM05D006286 ORTHO05D007741 2.3e-54 216.5 193 57.0
Actinidia03097 Actinidia chinensis HOM05D006286 ORTHO05D007741 6.3e-52 208.4 128 75.0
SHI13825 Sapria himalayana HOM05D000350 ORTHO05D000228 5.5e-32 142.1 184 42.4
Actinidia13543 Actinidia chinensis HOM05D006286 ORTHO05D007741 6.8e-30 135.2 91 71.4
MCO04G355 Micromonas commoda HOM05D006286 ORTHO05D007741 1.3e-25 120.9 208 36.5
Cfa025685 Carpinus fangiana HOM05D006286 ORTHO05D007741 2.9e-25 119.8 275 32.7
Cre14.g619900 Chlamydomonas reinhardtii HOM05D006286 ORTHO05D007741 5.7e-21 105.5 202 33.7
PRCOL_00006636 Prasinoderma coloniale HOM05D006286 ORTHO05D007741 2.4e-19 100.1 184 35.9
RcHm_v2.0_Chr1g0376261 Rosa chinensis HOM05D006286 ORTHO05D007741 1.2e-15 87.8 49 77.6
FvH4_2g14060 Fragaria vesca HOM05D006286 ORTHO05D007741 3.1e-14 83.2 61 60.7
Ah.14g078790 Amaranthus hybridus HOM05D006286 ORTHO05D007741 4.4e-13 79.3 49 77.6
SEGI_15131 Sequoiadendron giganteum HOM05D006286 ORTHO05D007741 9.5e-08 61.6 34 76.5


User provided reference genes

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